Prokaryotic Microorganisms Research Articles

The Main Groups of Photosynthetic Bacteria and Photosynthetic Pigments

Photosynthesis is one of the most important process on today’s Earth, which provides most of the energy source of the Earth’s biosphere, changed and shaped the atmosphere and oceans in early days of the Earth. Photosynthetic bacteria are a kind of prokaryotic microorganism that can assimilate or dissimilate by using light energy as an energy source and organic or inorganic matter as the electron donor for assimilation or heterocytosis, which can be divided into Cyanobacteria, Purple bacteria (PB), Green bacteria (GB), Aerobic anoxygenic photosynthesis bacteria (AAPB) and others. In this paper, the literature on photosynthetic bacteria in recent years is reviewed and combined with the latest astrobiology research, revealing the photosynthetic pigment composition of different photosynthetic bacteria. Cyanobacteria contain Chlorophyll (Chl) for the absorption and transfer of light energy including Chl a, CHl b, Chl d, carotenoids and phycobilins, of which chlorophyll b and chlorophyll d are not contained in all types of cyanobacteria, PB contain BChl a or BChl b, GSB contains photopigments BChl a, Chl a, and BChl c, d, or e, GNSB contains photopigments BChl a and/or BChl c, and AAPB mainly contain BChl a. Understanding how Photosynthesis evolves, what kinds of photosynthetic pigments and how do it function could provide a new insight into the origins of life and are beneficial to detection of extraterrestrial life and potential habitable planets.

Специфика фототрофных наземных микробных комплексов в посевах пшеницы

The article presents the results of determining the species and quantitative composition of algae and cyanobacteria in terrestrial growths under wheat crops. The wheat seeds were inoculated with various microorganisms in mono-, binary and triple combinations before sowing. Algocyanoflora of the “blooming” soil was represented by 24 species: Cyanobacteria – 7; Chlorophyta + Streptophyta – 12; Bacillariophyta – 5. The inoculants were representatives of prokaryotic and eukaryotic microorganisms – antagonists of Fischerella muscicola, Trichoderma sp. and the phytopathogen Fusarium culmorum. In one of the experimental variants, pre-sowing treatment with the fungicide “Maksim”® was used. It has been shown that during the formation of soil “blooming” the dominant microbiomes are green algae (Chlorococcum infusionum, Klebsormidium flaccidum) and cyanobacteria (species of the genera Leptolyngbya, Phormidium). When determining the number of phototrophic populations, it was found that their density ranges from 1.8 to 8.1 million cells/cm2. At the same time, the maximum development of phototrophs was found in the control variant, and the minimum number was found in the variant with a chemical disinfectant. In variants with microbial inoculation, the peak development of microphototrophs is typical for treatment with a triple mixture and a binary mixture of Fischerella + Trichoderma. Determination of the structure of microbial populations showed that the strongest dominance of cyanobacteria (80,2%) was detected on an artificial infectious background caused by pre-sowing inoculation of wheat seeds with the phytopathogen F. culmorum. A relatively high content of cyanobacteria (up to 60%) is observed in 4 experimental variants (Fischerella, Fischerella + Trichoderma, Trichoderma + Fusarium, Fischerella +Fusarium) and in the remaining 4 variants there is some dominance of microscopic algae ranging from 52 to 58%. Therefore, according to the results obtained, microbial inoculation does not lead to radical changes in the state of terrestrial phototrophic microbial communities, while chemical fungicide significantly suppresses the development of algae and cyanobacteria.

Microbiological indicators of early Holocene near-terrace soil in the valley of the Mzymta River on the Black Sea coast of the Caucasus

By the example of studying the Early Holocene paleoalluvial soil (ancient man's site in Akhtsu Grotto, an overflow terrace of the middle reaches of the Mzymta River, Sochi Black Sea region), the efficiency of using a set of microbiological methods revealing the conditions of formation of the ancient paleoobject and the genesis of the geomorphology of the river valley was shown. The study of morphology and mesomorphology of the palaeo-soil allowed to assume its possible formation under the conditions significantly more hydromorphic in comparison with the modern ones. It is probable that earlier, at the beginning of the Holocene, this area was not a terrace, but a near-terrace, over-watered part of the river floodplain. Microbiological characteristics confirmed this assumption. The composition of the microbial community was identified from the isolated soil DNA of prokaryotic microorganisms (bacteria and archaea) by DNA metabarcoding. Groups and species of microorganisms-indicators reflecting the specificity of genesis of the studied soils were identified. Microbiological indicators of overwatered conditions were representatives of the phylum Planctomycetes of Phycisphaerae and Planctomycetia classes dominant in the microbiome (more than 1% of total DNA) and cyanobacteria of Chloroplast class of Streptophyta, Stramenopiles and Pseudanabaenale orders, as well as archaea (0.5% of total DNA) of Euryarchaeota phylum; Thermoplasmata class; Methanomassiliicoccaceae family, capable of methanogenesis. This species was not found in the microbial complex of the modern background soil. Indicator microorganisms identified as part of the prokaryotic community of palaeo-soils may potentially have useful applicable properties.

Evaluating the efficacy of microalgal-bacterial granular sludge system in lake water remediation.

The microalgal-bacterial granular sludge (MBGS) process is attracting attention as a green wastewater treatment technology. However, research on the application of MBGS in lake water remediation is limited. Thus, this experiment investigated the feasibility and the efficacy of the MBGS process for the treatment of natural lake water in a continuous-flow tubular reactor. The averageremoval efficiencies of COD, NH4+-N, NO3--N, NO2--N, TN, PO43--P, TP, and turbidity by MBGS system in the day/night cycles were 50.10/61.39%, 63.52/75.23%, 43.37/73.57%, 90.72/93.48%, 78.30/80.02%, 71.13/74.62%, 65.08/70.57%, 92.32/89.84%, respectively. As the experiment progressed, the total chlorophyll content in MBGS decreased as the granule size increased, while the extracellular polymeric substances content increased, suggesting that thelake water contributed to bacterial growth and favored the stability of MBGS. Moreover, the eukaryotic microorganisms were dominated by Chlorophyta and Rotifera, and prokaryotic microorganisms were dominated by Proteobacteria in MBGS. By promoting the decomposition of various organic compounds in the lake water and inhibiting sludge expansion, these microorganisms helpthe MBGS system tomaintain excellent granular characteristics and performance. Overall, the MBGS system proved to be a feasible option for the remediation of natural lake waters.

Promising non-model microbial cell factories obtained by genome reduction.

The development of sustainable processes is the most important basis to realize the shift from the fossil-fuel based industry to bio-based production. Non-model microbes represent a great resource due to their advantageous traits and unique repertoire of bioproducts. However, most of these microbes require modifications to improve their growth and production capacities as well as robustness in terms of genetic stability. For this, genome reduction is a valuable and powerful approach to meet industry requirements and to design highly efficient production strains. Here, we provide an overview of various genome reduction approaches in prokaryotic microorganisms, with a focus on non-model organisms, and highlight the example of a successful genome-reduced model organism chassis. Furthermore, we discuss the advances and challenges of promising non-model microbial chassis.

Temporal dynamics of microbial communities in the water of polyculture pond system for Chinese swimming crab Portunus trituberculatus

Microorganisms as the vital component of aquaculture ecosystems, were involved in nutrient cycling, water quality regulation, and the health of cultured species. In this study, aquatic water samples were collected monthly to reveal microbial community compositions, functions, and interactions in different habitats (pond and waterway) during the culture stages of the Chinese swimming crab Portunus trituberculatus in Shandong Province. Due to the semi-closed conditions with limited water exchange, the α diversities were lower in the polyculture pond. The relative abundances of the dominant phyla varied dramatically, and most biomarkers were identified in the polyculture pond. The β diversity of the microbial communities significantly differed among culture stages and habitats. Furthermore, the heterogeneity of prokaryotic microorganisms was greater than that of eukaryotic microorganisms. In the polyculture pond, the microbial community was sensitive to nutrient cycling, with abundant functions related to “photoautotrophy”, “nitrogen_respiration” and “nitrate_respiration”, corresponding to P. trituberculatus culture activities. The co-occurrence network of the microbial community in the polyculture pond tended to be looser than that in the waterway, with a lower number of taxa and correlations. In addition, these networks had nonrandom patterns and formed “small world” topological structures. The low-abundance genera with a higher level of betweenness centrality scores were the hubs or connectors in the networks and might play an essential role in microbial community composition. Furthermore, potential pathogens (Vibrio, Acholeplasma, Photobacterium, and Flavobacterium) deserve more attention during P. trituberculatus culture. This study will be useful for understanding microbial communities in polyculture pond systems and will provide a reference for the health aquaculture of P. trituberculatus.

Brown Algae as a Valuable Substrate for the Cost-Effective Production of Poly-γ-Glutamic Acid for Applications in Cream Formulations.

Poly-γ-glutamic acid (γ-PGA) is a carboxylic-acid-rich, bio-derived, water-soluble, edible, hydrating, non-immunogenic polymer produced naturally by several microorganisms. Here, we re-emphasise the ability of Bacillus subtilis natto to naturally produce γ-PGA on whole seaweed, as well as for the yields and chemical properties of the material to be affected by the presence of Mn(2+). Hyaluronic acid (HA) is an extracellular glycosaminoglycan which presents a high concentration of carboxylic acid and hydroxyl groups, being key in fulfilling numerous applications. Currently, there are strong environmental (solvent use), social (non-vegan extraction), and economic factors pushing for the biosynthesis of this material through prokaryotic microorganisms, which is not yet scalable or sustainable. Our study aimed to investigate an innovative raw material which can combine both superior hygroscopicity and UV protection to the cosmetic industry. Comparable hydration effect of commercially available γ-PGA to conventional moisturising agents (HA and glycerol) was observed; however, greater hydration capacity was observed from seaweed-derived γ-PGA. Herewith, successful incorporation of seaweed-derived γ-PGA (0.2-2 w/v%) was achieved for several model cream systems with absorbances reported at 300 and 400 nm. All γ-PGA-based creams displayed shear thinning behaviour as the viscosity decreased, following increasing shear rates. Although the use of commercial γ-PGA within creams did not suggest a significant effect in rheological behaviour, this was confirmed to be a result of the similar molecular weight. Seaweed-derived γ-PGA cream systems did not display any negative effect on model HaCaT keratinocytes by means of in vitro MTT analysis.

Spatiotemporal Variations in Co-Occurrence Patterns of Planktonic Prokaryotic Microorganisms along the Yangtze River.

Bacteria and archaea are foundational life forms on Earth and play crucial roles in the development of our planet's biological hierarchy. Their interactions influence various aspects of life, including eukaryotic cell biology, molecular biology, and ecological dynamics. However, the coexistence network patterns of these microorganisms within natural river ecosystems, vital for nutrient cycling and environmental health, are not well understood. To address this knowledge gap, we systematically explored the non-random coexistence patterns of planktonic bacteria and archaea in the 6000-km stretch of the Yangtze River by using high-throughput sequencing technology. By analyzing the O/R ratio, representing the divergence between observed (O%) and random (R%) co-existence incidences, and the module composition, we found a preference of both bacteria and archaea for intradomain associations over interdomain associations. Seasons notably influenced the co-existence of bacteria and archaea, and archaea played a more crucial role in spring as evidenced by their predominant presence of interphyla co-existence and more species as keystone ones. The autumn network was characterized by a higher node or edge number, greater graph density, node degree, degree centralization, and nearest neighbor degree, indicating a more complex and interconnected structure. Landforms markedly affected microbial associations, with more complex networks and more core species found in plain and non-source areas. Distance-decay analysis suggested the importance of geographical distance in shaping bacteria and archaea co-existence patterns (more pronounced in spring). Natural, nutrient, and metal factors, including water temperature, NH4+-N, Fe, Al, and Ni were identified as crucial determinants shaping the co-occurrence patterns. Overall, these findings revealed the dynamics of prokaryotic taxa coexistence patterns in response to varying environmental conditions and further contributed to a broader understanding of microbial ecology in freshwater biogeochemical cycling.

The impact of space, host dissimilitude, and environment on prokaryotic communities of golf ball sponges

AbstractGolf ball sponges are small, sometimes inconspicuous, sponges. They can be found across a range of habitats varying from perturbed and pristine coral reefs to harbours and marine lakes and from the deep sea to shallow waters. They can be difficult to distinguish in the field and have presented some problems with taxonomists lumping and splitting species due to the difficulty in defining clear species boundaries. In the present study, we sampled golf ball sponges from Indo‐Pacific and Caribbean locations and used 16S gene amplicon sequencing to study their prokaryotic communities. We show that golf ball sponges harbour a wide variety of prokaryotic communities. Among the most prevalent operational taxonomic units (OTUs), several belonged to a range of taxa, including the bacterial AqS1 and EC94 groups, which have been associated with genes known to facilitate interactions between hosts and microbes. Certain host taxa were enriched with OTUs classified to the SAR202 clade of Chloroflexi. Our findings show that prokaryotic dissimilarity varied as a function of space (geographical distance) and host dissimilitude. The importance of space and host dissimilitude, however, varied depending on the data transformation with host dissimilitude a more important predictor of untransformed data whereas space was a more important predictor of log‐transformed data. Given that log‐transformation downscales the influence of abundant taxa, we interpret these results by the tendency of closely related host organisms to host similar sets of abundant symbiotic microorganisms; distantly sampled specimens, in contrast, tend to harbour less abundant prokaryotic microorganisms found in the surrounding environment (e.g., seawater or sediment).

Untangling Structural and Functional Diversity of Prokaryotic Microbial Assemblage on Mangrove Pneumatophores

Untangling Structural and Functional Diversity of Prokaryotic Microbial Assemblage on Mangrove Pneumatophores

Effects of Water Level Fluctuations and Vegetation Restoration on Soil Prokaryotic Microbial Community Structure in the Riparian Zone of the Three Gorges Reservoir

Riparian zones are typical fragile and sensitive ecological areas. Fluctuations in water level are the main factor affecting the soil environment in these zones, and vegetation restoration is considered an important means of soil conservation there. However, the interactive effects of water level fluctuations and vegetation restoration on the soil microbial community structure in the reservoir riparian zone remain unclear. Therefore, we selected abandoned grassland and artificial forestland at different water level elevations as research objects in the riparian zone of the Three Gorges Reservoir. We used 16S rRNA high-throughput sequencing technology to explore the composition and diversity of soil prokaryotic microbial communities and investigated the main environmental factors driving the soil microbial community structure. The results showed that the α diversity of soil prokaryotes was the highest at the low water level of the riparian zone. The Pielou_e index, Shannon index, and Simpson index at the 163 m elevation were significantly higher than those at the 168 m elevation, and the Chao1 index and Shannon index were significantly higher than those at the 173 m elevation. However, no significant difference was found in the soil microbial community α diversity between abandoned grassland and artificial forestland. At the same time, water level fluctuations and vegetation restoration had significant effects on the community composition of soil prokaryotic microorganisms, and there were significant differences in biomarker categories in different study sites. Notably, the effects of vegetation restoration types on the soil prokaryotic microbial community structure were stronger than that of water level fluctuations. In addition, the results of hierarchical segmentation showed that soil pH was the main driving factor for the change in soil prokaryotic microbial community structure in the Three Gorges Reservoir. These results deepen our understanding of the variations in microbial community structure in the reservoir riparian zone and provide scientific reference for the restoration and reconstruction of the riparian zone ecosystem.

Microbial community structure and carbon transformation characteristics of different aggregates in black soil.

Previous research on whole-soil measurements has failed to explain the spatial distribution of soil carbon transformations, which is essential for a precise understanding of the microorganisms responsible for carbon transformations. The microorganisms involved in the transformation of soil carbon were investigated at the microscopic scale by combining 16S rDNA sequencing technology with particle-level soil classification. In this experiment,16S rDNA sequencing analysis was used to evaluate the variations in the microbial community structure of different aggregates in no-tillage black soil. The prokaryotic microorganisms involved in carbon transformation were measured before and after the freezing and thawing of various aggregates in no-tillage black soil. Each sample was divided into six categories based on aggregate grain size: >5, 2-5, 1-2, 0.5-1, 0.25-0.5, <0.25 mm, and bulk soil. The relative abundance of Actinobacteria phylum in <0.25 mm aggregates was significantly higher compared to that in other aggregates. The Chao1 index, Shannon index, and phylogenetic diversity (PD) whole tree index of <0.25 mm aggregates were significantly smaller than those of in bulk soil and >5 mm aggregates. Orthogonal partial least-squares discrimination analysis showed that the microbial community composition of black soil aggregates was significantly different between <1 and >1 mm. The redundancy analysis (RDA) showed that the organic carbon conversion rate of 0.25-0.5 mm agglomerates had a significantly greater effect on their bacterial community structure. Moreover, humic acid conversion rates on aggregates <0.5 mm had a greater impact on community structure. The linear discriminant analysis effect size (LEfSe) analysis and RDA analysis were combined. Bradyrhizobium, Actinoplane, Streptomyces, Dactylosporangium, Yonghaparkia, Fleivirga, and Xiangella in <0.25 mm aggregates were positively correlated with soil organic carbon conversion rates. Blastococcus and Pseudarthrobacter were positively correlated with soil organic carbon conversion rates in 0.25-0.5 mm aggregates. In aggregates smaller than 1 mm, the higher the abundance of functional bacteria that contributed to the soil's ability to fix carbon and nitrogen. There were large differences in prokaryotic microbial community composition between <1 and >1 mm aggregates. The <1 mm aggregates play an important role in soil carbon transformation and carbon fixation. The 0.25-0.5 mm aggregates had the fastest organic carbon conversion rate and increased significantly more than the other aggregates. Some genus or species of Actinobacteria and Proteobacteria play a positive role in the carbon transformation of <1 mm aggregates. Such analyses may help to identify microbial partners that play an important role in carbon transformation at the micro scale of no-till black soils.

Nitrogen-fixing cyanobacteria enhance microbial carbon utilization by modulating the microbial community composition in paddy soils of the Mollisols region

Nitrogen-fixing cyanobacteria (NFC) are photosynthetic prokaryotic microorganisms capable of nitrogen fixation. They can be used as biofertilizers in paddy fields, thereby improving the rice tillering capacity and yield. To reveal the microbiological mechanisms by which nitrogen-fixing cyanobacteria alter soil carbon storage, we conducted a field experiment using NFC as a partial substitute for nitrogen fertilizer in paddy fields in the Sanjiang Plain of Northeast China's Mollisols region. Using metagenomic sequencing technology and Biolog Ecoplate™ carbon matrix metabolism measurements, we explored the changes in the soil microbial community structure and carbon utilization in paddy fields. The results indicated that the replacement of nitrogen fertilizer with NFC predisposed the soil microbial community to host a great number of copiotrophic bacterial taxa, and Proteobacteria and Actinobacteria were closely associated with the metabolism of soil carbon sources. Moreover, through co-occurrence network analysis, we found that copiotrophic bacteria clustered in modules that were positively correlated with the metabolic level of carbon sources. The addition of NFC promoted the growth of copiotrophic bacteria, which increased the carbon utilization level of soil microorganisms, improved the diversity of the microbial communities, and had a potential impact on the soil carbon stock. The findings of this study are helpful for assessing the impact of NFC on the ecological function of soil microbial communities in paddy fields in the black soil area of Northeast China, which is highly important for promoting sustainable agricultural development and providing scientific reference for promoting the use of algal-derived nitrogen fertilizers.

Identification and Functional Analysis of Lysine 2-Hydroxyisobutyrylation in Cyanobacteria.

Cyanobacteria are the oldest prokaryotic photoautotrophic microorganisms and have evolved complicated post-translational modification (PTM) machinery to respond to environmental stress. Lysine 2-hydroxyisobutyrylation (Khib) is a newly identified PTM that is reported to play important roles in diverse biological processes, however, its distribution and function in cyanobacteria have not been reported. Here, we performed the first systematic studies of Khib in a model cyanobacterium Synechococcus sp. strain PCC 7002 (Syn7002) using peptide prefractionation, pan-Khib antibody enrichment, and high-accuracy mass spectrometry (MS) analysis. A total of 1875 high-confidence Khib sites on 618 proteins were identified, and a large proportion of Khib sites are present on proteins in the cellular metabolism, protein synthesis, and photosynthesis pathways. Using site-directed mutagenesis and functional studies, we showed that Khib of glutaredoxin (Grx) affects the efficiency of the PS II reaction center and H2O2 resistance in Syn7002. Together, this study provides novel insights into the functions of Khib in cyanobacteria and suggests that reversible Khib may influence the stress response and photosynthesis in both cyanobacteria and plants.

The Antimicrobial Effects of Myrosinase Hydrolysis Products Derived from Glucosinolates Isolated from Lepidium draba.

Lepidium draba (hoary cress) is a perennial plant belonging to the Brassicaceae family that produces two dominant glucosinolates (GLSs): glucoraphanin (GRN) and sinalbin (SBN). They represent the stored form, which is converted upon the myrosinase (Myr) hydrolysis activity to active compounds, mainly isothiocyanates (ITCs) such as sulforaphane (SFN) or p-hydroxybenzyl isothiocyanate (pHBITC). Research on ITCs that have proven anticancer, antimicrobial, and chemoprotective properties is usually conducted with pure commercially available compounds. However, these are chemically reactive, making it difficult to use them directly for preventive purposes in dietary supplements. Efforts are currently being made to prepare dietary supplements enriched with GLS and/or Myr. In this study, we report a simple but efficient chromatographic procedure for the isolation and purification of GLSs from MeOH extract from hoary cress based on a combination of ion exchange and gel permeation chromatography on DEAE-Sephadex A-25 and Sephadex LH-20. To obtain the Myr required for efficient hydrolysis of GLSs into antibacterial ITCs, we developed a rapid method for its extraction from the seeds of Lepidium sativum (garden cress). The yields of GLSs were 22.9 ± 1.2 mg GRN (purity 96%) and 10.4 ± 1.1 mg SBN (purity 92%) from 1 g of dry plant material. Both purified GLSs were used as substrates for the Myr. Analysis of the composition of hydrolysis products (HPs) revealed differences in their hydrolysis rates and in the degree of conversion from GLSs to individual ITCs catalyzed by Myr. When GRNs were cleaved, SFNs were formed in an equimolar ratio, but the formation of pHBITCs was only half that of cleaved SBNs. The decrease in pHBITC content is due to its instability compared to SFN. While SFN is stable in aqueous media during the measurement, pHBITC undergoes non-enzymatic hydrolysis to p-hydroxybenzyl alcohol and thiocyanate ions. Testing of the antimicrobial effects of the HPs formed from GRN by Myr under premix or in situ conditions showed inhibition of the growth of model prokaryotic and eukaryotic microorganisms. This observation could serve as the jumping-off point for the design of a two-component mixture, based on purified GLSs and Myr that is, usable in food or the pharmaceutical industry in the future.

Fermentation Technology and Functional Foods.

Food is an integral part of our civilization. It is a cultural phenomenon that, while having evolved, is associated with societal traditions and identity. This work analyzes studies conducted to highlight the health properties of the most common ethnic foods. Although these foods were originally created from the need to preserve perishable produce, presently, we know that the fermentation process makes them nutritionally more complete. The basis of these transformations lies in that vast range of prokaryotic and eukaryotic microorganisms that, similar to small biochemical factories, can transform the initial nutrients into metabolically more active biomolecules through fermentation. Although naturally occurring microbes work together for mutual benefit, environmental conditions enhance or inhibit their development. Starting from a selection of microorganisms naturally present on a substrate, we attempt to select the most suitable species to obtain a fermented food with the best nutritional qualities and the richest in nutraceuticals.

Exploring the Antimicrobial, Antioxidant, and Antiviral Potential of Eco-Friendly Synthesized Silver Nanoparticles Using Leaf Aqueous Extract of Portulaca oleracea L.

Herein, the prospective applications of green fabricated silver nanoparticles (Ag-NPs) within the biomedical field were investigated. The leaf aqueous extract of Portulaca oleracea L., a safe, cheap, and green method, was used to fabricate Ag-NPs. The maximum plasmon resonance of synthesized NPs has appeared at 420 nm. The various biomolecules present in the plant extract to assemble spherical Ag-NPs with sizes of 5-40 nm were analyzed using Fourier transform infrared and transmission electron microscopy. The Ag was the major content of the formed Ag-NPs with an atomic percent of 54.95% and weight percent of 65.86%, as indicated by EDX. The crystallographic structure of synthesized NPs was confirmed by the diffraction of the X-ray. The dynamic light scattering exhibits the homogeneity and mono-dispersity nature with a polydispersity index of 0.37 in the colloidal fluid and a zeta potential value of -36 mV. The synthesized Ag-NPs exhibited promising antimicrobial efficacy toward various prokaryotic and eukaryotic pathogenic microorganisms with low MIC values of 12.5 µg mL-1 and 6.25 µg mL-1, respectively. Additionally, the P. oleracea-formed Ag-NPs showed optimistic antioxidant activity assessed by DPPH and H2O2 assay methods with the highest scavenging percentages of 88.5 ± 2.3% and 76.5 ± 1.7%, respectively, at a concentration of 200 µg mL-1. Finally, the biosynthesized Ag-NPs showed high antiviral properties toward the hepatitis A virus and Cox-B4 with inhibition percentages of 79.16 ± 0.5% and 73.59 ± 0.8%, respectively. Overall, additional research is essential to explore the Ag-NP-based aqueous extract of P. oleracea for human health. In the current investigation the use of synthesized Ag-NPs as antimicrobial, antioxidant, and antiviral agents to protect against pathogenic microbes, degenerative diseases caused by various oxidative stresses, and deadly viruses is recommended.

The Decorated Garden Grotto of Condes de Basto Palace in Évora, Portugal: Microbial Community Characterization and Biocide Tests for Conservation

The Eugénio de Almeida Foundation’s Casa de Fresco is a historical monument of valuable historic–artistic significance, which currently reveals an assortment of biofilms due to the proliferation of microorganisms in the stone and rocaille elements. The biodeterioration in this area was studied as part of the Conservation and Restoration Project. We effectively characterized the local microbial community using modern high-throughput DNA analysis. Our results suggested the existence of a variety of lichens or lichenized fungi, including genera such as Variospora, Verrucaria, Circinaria, and Caloplaca. Furthermore, we detected several prokaryote microorganisms related to the identification of these lichens. To properly deal with this microbiological issue and avoid fungal recolonization, we evaluated available commercial antimicrobial treatments.

Competition between ammonia-oxidizing archaea and complete ammonia oxidizers from freshwater environments.

Nitrification is a key process in the global nitrogen cycle. Aerobic ammonia oxidizers play a central role in the nitrogen cycle by performing the first step of nitrification. Ammonia-oxidizing archaea (AOA) and complete ammonia oxidizers (comammox) are the dominant nitrifiers in environments with low ammonium availability. While AOA have been studied for almost 20 years, comammox were only discovered 8 years ago. Until now, there has been a gap in our understanding of whether AOA and comammox can co-exist or if one strain would be dominant under ammonium-limiting conditions. Here, we present the first study characterizing the competition between freshwater AOA and comammox under varying substrate concentrations. Our results will help in elucidating the niches of two key nitrifiers in freshwater lakes.

Nitrite self-degradation process in radish paocai under the synergistic regulation of prokaryotic microorganisms

Nitrite, as the main hazard in pickle production, can be completely self-degraded through microbial biological enzymatic degradation (BED) and chemical acid degradation (CAD), providing a valuable strategy for the in-situ control of nitrite in pickle production. However, the microbial mechanism of the self-degradation of nitrite in radish paocai, a popular pickle in Asia, remains unclear. Herein, this study aimed to reveal the microbial metabolic pathways and processes regulating the self-degradation of nitrite during the pickling of radish paocai. In the early stage of the pickling process, Enterobacter with nitrate reductase (NarG) might reduce nitrate to form a nitrite peak of 27.61 mg/kg through “truncated denitrification”, which is in excess of the Chinese national standard (20 mg/kg). As nir genes encoding nitrite reductase increased to peak values of 9.8 × 104 copies/μL, BED dominates the self-degradation of nitrite during this early stage, which is performed by prokaryotic microorganisms such as Chryseobacterium and Halobacterium with nitrite reductase (NirK) through “complete denitrification”. Meanwhile, Weissella without nitrite reductase may dominate the pH decrease from 6.7 to 4.3 through diverse organic acids generated by metabolizing dominant reducing sugars, such as glucose and fructose of radish, thereby initiating CAD. Subsequently, the acid-tolerant Limosilactobacillus continued to reduce pH by metabolizing glucose, causing CAD to replace BED to dominate the self-degradation of nitrite until the end of pickling. Thus, the nitrite self-degradation process in radish paocai is under the synergistic regulation of diverse prokaryotic microorganisms.