Gradients Of Primary Productivity Research Articles

Effect of an herbivorous subterranean rodent on vegetation in relation to primary productivity

AbstractSubterranean rodents modify the surrounding environment being classified, in some cases, as keystone species and/or ecosystem engineers. This role could be context‐dependent if the changes produced shift throughout the species distribution range and are stronger under certain environmental conditions. Our objective was to analyse whether the effect of Ctenomys mendocinus on vegetation cover is context‐dependent. Given that primary productivity may increase plants' ability to tolerate or compensate following herbivory, we hypothesize that the effect of C. mendocinus on vegetation cover will be context‐dependent along a primary productivity gradient, with smaller effects in highly productive environments and larger effects in less productive ones. We compared the effect of C. mendocinus on plant cover among four contrasting environments and found that it depended on primary productivity in a predictable manner. In low productivity environments, the rodent significantly reduces vegetation cover, while it has no discernible effect in highly productive ones. These findings suggest that the effect of C. mendocinus on plant cover depends on primary productivity level and highlights the importance of accounting for the underlying environmental factors that influence the intensity of C. mendocinus–plant interaction.

Top-down versus bottom-up: Grazing and upwelling regime alter patterns of primary productivity in a warm-temperate system.

Community structure is driven by the interaction of physical processes and biological interactions that can vary across environmental gradients and the strength of top-down control is expected to vary along gradients of primary productivity. In coastal marine systems, upwelling drives regional resource availability through the bottom-up effect of nutrient subsidies. This alters rates of primary production and is expected to alter algae-herbivore interactions in rocky intertidal habitats. Despite the potential for upwelling to alter these interactions, the interaction of upwelling and grazing pressure is poorly understood, particularly for warm-temperate systems. Using in situ herbivore exclusion experiments replicated across multiple upwelling regimes, we investigated the effects of both grazing pressure, upwelling, and their interactions on the sessile invertebrate community and biomass of macroalgal communities in a warm-temperate system. The sessile invertebrate cover showed indirect effects of grazing, being consistently low where algal biomass was high at upwelling sites and at nonupwelling sites when grazers were excluded. The macroalgal cover was greater at upwelling sites when grazers were excluded and there was a strong effect of succession throughout the experimental period. Grazing effects were greater at upwelling sites, particularly during winter months. There was a nonsignificant trend toward greater grazing pressure on early than later successional stages. Our results show that the positive bottom-up effects of nutrient supply on algal production do not overwhelm top-down control in this warm-temperate system but do have knock-on consequences for invertebrates that compete with macroalgae for space. We speculate that global increases in air and sea surface temperatures in warm-temperate systems will promote top-down effects in upwelling regions by increasing herbivore metabolic and growth rates.

Rapid microbial uptake and mineralization of 14C-labelled cysteine and methionine along a grassland productivity gradient

Cysteine (Cys) and methionine (Met) are central to terrestrial S cycling because they are sources of carbon (C), nitrogen (N), and sulphur (S) for plant nutrition and microbial growth. However, soil microorganisms are expected to compete for the C, N and S in these S-amino acids. We hypothesized that microbial competition would be greater in soils with low plant productivity due to lower C inputs from plants. Here we added 14C-labelled Cys and Met to 5 soils collected from an altitude-driven primary grassland productivity gradient, we then measured microbial uptake with a centrifugal drainage procedure over 60 min, and the subsequent mineralization with NaOH traps over 48 h. Our results revealed that both Cys and Met were rapidly assimilated by soil microbes, with half-lives ranging from 0.34 to 2.14 min, which is an order of magnitude (or more) faster than when determined from measurement of 14CO2 evolution. This considerable delay between microbial 14C removal from soil solution and subsequent 14CO2 evolution indicates that the degradation of Cys and Met in grassland soils occurred mainly through biological processes. Soil microbial uptake of Cys and Met was dominated by a high-affinity transport system (0.01–0.1 mM), while a lower affinity transport system became more important at higher substrate concentrations (1–100 mM). In addition, microbial uptake and mineralization rates of Cys and Met declined in less productive, higher elevation sites, suggesting that the turnover of organic N and S, and subsequent availability for plant uptake is likely to be controlled by soil fertility. We conclude that although Cys and Met may represent a minor component of DON and DOS pools in soil, their importance for soil microbes and plant nutrition may have been underestimated due to their fast turnover and replenishment rates in grassland soils.

Life Histories Vary with Primary Productivity in the Northern Gulf of Mexico

Human activities have increased nutrient delivery to aquatic ecosystems around the world, spurring primary productivity, and leading to the establishment and expansion of oxygen-limited “dead zones.” How will marine animals respond to these changing conditions? To address that question, we take a space-for-time approach and compare the traits of different marine invertebrates along a primary productivity gradient in the northern Gulf of Mexico. Previous studies have found that life history traits can be sensitive to prevailing environmental conditions. Using Holocene death assemblages collected from -20 meters offshore Alabama and Florida, we test the hypothesis that bivalve egg size, and bryozoan reproductive mode, vary with primary productivity. Based on previous studies, we expect populations in areas with an abundance of food to exhibit the following characteristics: 1) cupuladriid bryozoans will exhibit greater frequencies of clonal to aclonal reproduction; and 2) bivalves will produce smaller eggs due to greater juvenile survivorship and fecundity selection. We found that Discoporella depressa colonies show low frequencies of clonal reproduction overall, but that percent clonality was greater in coastal Alabama than Florida. Cupuladria colonies showed higher proportions of clonal reproduction, whereas Reussirella doma colonies exhibited exclusively aclonal reproduction. Egg size is positively correlated with the earliest stage of larval shell growth (PI size) in marine bivalves. Nucula proxima larval shell size varied inversely with primary productivity; larval shells were larger in Florida than Alabama. Preliminary live-dead results in both regions show limited evidence of change over time, in contrast with previous analyses of other bivalve species in the region. These space-for-time case studies highlight ways in which benthic marine invertebrates may respond to future anthropogenic driven changes in primary production in the coastal ocean.

The spatial distribution of surface ocean primary productivity in the wake of Marinoan global glaciation

Termination of the Marinoan global glaciation (~650–635 Ma) was followed by the diversification of eukaryotes (e.g., early animals) and oxygenation of deep oceans in the early Ediacaran Period. Previous studies indicate the recovery of marine primary productivity immediately before the cap carbonate precipitation but after melting of the Marinoan global glaciation. Pyrite concretions from the topmost Nantuo Formation in the Yangtze Block, South China, decrease in abundance from shelf to basin facies, while their high positive sulfur (S) isotope values argue the development of oceanic euxinia, which require ample supply of organic matter, presumably reflecting the recovery of marine productivity. However, pyrite contents and pyrite S isotopes alone cannot uniquely constrain the extent and spatial distribution of surface ocean organic matter production. In this study, we conducted in situ analyses of pyrite iron (Fe) (δ56Fepy) and S isotopes (δ34Spy) of pyrite concretions collected from four sections of the Nantuo Formation, spanning from shelf to basin environments. Pyrite from different facies has distinct δ34Spy and δ56Fepy values. In general, δ34Spy values display an increasing trend from shelf to basin, whereas δ56Fepy values demonstrate an opposite trend with the lowest value in the basin sections. The opposite δ34Spy and δ56Fepy shelf-basin gradients strongly argue against the hydrothermal origin, yet verify the diagenetic precipitation of Nantuo pyrite in sediment porewater. Numerical models were developed to quantify the microbial sulfate reduction (MSR), microbial iron reduction (MIR) and pyrite precipitation processes. The modeling results provide an explanation for the shelf-basin decrease of δ56Fepy values, indicating that both the fraction of MIR (fMIR) and the fraction of Fe2+ consumed by pyrite precipitation (fpy) increase from shelf to basin sections. In addition, high δ34Spy values and pyrite contents in the basin sections also imply more intense MSR and higher supplies of H2S from sulfidic seawater. Both MSR and MIR were fueled by organic matter, thus suggesting that the surface ocean primary productivity displayed an unusual increasing trend toward the open ocean, which was different from the higher productivity in modern near-shore regions. We speculate that the reversed shelf-basin gradient of surface ocean primary productivity might be attributed to high P concentration in the post-glacial ocean. Terrestrial riverine P supply, on the contrary, might have diluted seawater P concentration in the near-shore regions. Therefore, our result indicates that the recovery of marine productivity in the aftermath of the Marinoan global glaciation may be not controlled by the availability of nutrients, instead, the immediate recovery of productivity might have been prohibited by, e.g., low seawater pH at a high atmospheric pCO2 level in the initial melting of the Marinoan global glaciation. The marine primary productivity did not recover until a substantive rise of seawater pH, during which deglacial intense continental weathering delivered abundant P into the ocean and accordingly elevated the seawater P concentration.

Geographic context is a key driver of spatial variation of bird species richness during migration

AbstractAimDetermine whether primary productivity or location (distance to the coast) is more important to migrating bird habitat selection.LocationYucatan Peninsula, Mexico.Time periodAugust–December and February–May 2009–2016.TaxaMigratory birds.MethodsUsing eBird data, we modelled spatial variation in species richness as a function of primary productivity and distance to the coast and how the relationships vary with time during spring and autumn migration. We compared the standardized regression coefficients of linear models with a Poisson error distribution.ResultsWe found that three primary productivity indices [normalized difference vegetation index (NDVI), enhanced vegetation index (EVI), heterogeneity] performed similarly in predicting species richness. However, species richness was more strongly associated with distance to the coast. In autumn, richness was higher closer to the coast through most of the season and then shifted inland late in autumn. Richness was also higher in more productive habitats. In spring, richness was higher inland early in the season but then increased closer to the coast. Species richness was relatively similar across the primary productivity gradient, even declining slightly with increasing NDVI.Main conclusionsWe did not find convincing evidence for a strong relationship between species richness and primary productivity. Instead, migration constrains birds such that they concentrate in coastal environments. In autumn, migrants may favour habitats that are both coastal and productive, such as those that occur along the Caribbean coast. In spring, migrants may also use the less productive Gulf of Mexico coast, possibly due to high arthropod production occurring during an otherwise dry time of year.

Top-down effects have primacy over bottom-up effects on the population dynamics of a flightless desert bird

In desert ecosystems, some argue that primary productivity controls vertebrate populations while others contend that predators' top-down effects are under-appreciated. While seldom used to explain population dynamics in desert environments, the exploitation ecosystems hypothesis (EEH) unites bottom-up and top-down processes by conceptualizing how the biomass of plants and consumers vary along spatial productivity gradients in the presence and absence of predators. Here, we test predictions from the EEH along temporal primary productivity gradients, by comparing abundances of an apex predator (dingo) and a large omnivorous flightless bird (emu) on either side of Australia's dingo-proof fence over a nine year period. Where dingo populations were not suppressed by humans, their abundance increased with rainfall in the previous 12 months but did not respond to rainfall where their populations were suppressed. Conversely, emu abundance increased in response to antecedent rainfall where dingoes were rare but showed a negligible response to rainfall where dingoes were common. Our results accord with the EEH by suggesting that dingoes' top-down effects can decouple the linkage between emu populations and primary productivity. More generally, our findings show that top-down effects can have primacy over bottom-up effects for both an apex predator and an omnivorous prey species.

Winter and summer biogeography of macrozooplankton community structure in the northern Antarctic Peninsula ecosystem

Climate forcing is impacting polar marine ecosystems through increased variability of winter sea-ice dynamics, which likely influences the distribution, abundance and structure of zooplankton assemblages, and thereby trophodynamics of marine food webs. Due to the challenges of working in polar marine ecosystems, most knowledge on polar zooplankton community structure is derived from summer surveys. Here we examine the spatial distribution, abundance and community structure of macrozooplankton in relation to sea-ice and ocean-climate dynamics within the Antarctic Peninsula marine ecosystem over five consecutive winters. We compare the patterns revealed during winter with historical data collected in the same region during austral summer. Hydrographic and macrozooplankton data were collected from >100 standard stations off the northern Antarctic Peninsula during summer (2003–2011) and winter (2012–2016). Using multivariate methods, the environmental drivers and geographic structuring of the macrozooplankton community during winter and summer were investigated.Eight taxa made up 90% of total macrozooplankton abundance in winter including Metridia species, post-larval and larval Euphausia superba, post-larval Thysanoessa macrura, Limacina helicina, Chaetognatha, Ostracoda and Radiozoa. Eight slightly different taxa including Calanoides acutus, Salpa thompsoni, T. macrura (post-larvae and larvae), Metridia spp., E. superba larvae, Chaetognatha, and Rhincalanus spp. made up 87% of the total abundance in summer. Macrozooplankton clustered into five groups in winter and seven groups in summer. Winter macrozooplankton structure was more spatially consistent among years compared to summer regardless of sea-ice conditions. Salinity, chlorophyll a biomass, upper mixed layer depth and time of day were most strongly correlated with the multivariate ordination in winter whereas salinity, phaeopigment biomass and year had the highest correlations for summer, indicating the importance of similar physical features in both seasons. However, the importance of time scales differed among seasons.Although environmental determinants of summer and winter macrozooplankton community structure indicate that community structure and occurrence were strongly tied to regional variability of salinity and primary productivity gradients, macrozooplankton community structure is likely much more complex than only a few hydrographic variables can explain. Cluster boundaries are likely driven by dynamic locations of currents, fronts and localized eddies in any given season or year.

Using biological traits to get insights into the bentho-demersal community sensitivity to trawling in the Celtic Sea

Abstract Coastal marine ecosystems are under many pressures, including bottom trawling, which is the most widespread human activity that directly affects seabed habitats. Therefore, it is of great importance to characterize the impacts of bottom trawling on bentho-demersal communities, which can be done through the study of indicators sensitive to trawling pressure. Using a functional indicator applied to 54 underwater video transects, we mapped the sensitivity to trawling of epibenthic invertebrates and fish communities in the Celtic Sea. We determined the relative influence of environmental and fishing variables on sensitivity and traits distribution. Our results suggest that community sensitivity to trawling is mainly driven by a spatial gradient of depth and primary productivity that separates the area into two main regions: a shallow, productive area, with low sensitivity and a higher abundance of swimming and crawling organisms, and a deeper, less productive area, with higher sensitivity due to a higher abundance of fixed, filter-feeding organisms. Fishing intensity also drives the sensitivity of communities confirming that they have already been shaped by a long history of mixed fisheries. The methodology used here provides a valuable monitoring tool and could be used to predict communities’ response to changes in fishing intensity and climate change.

Strontium isotopes trace biological activity in the Critical Zone along a climate and vegetation gradient

Weathering and ecosystem nutrition are intimately linked through the supply of fresh mineral nutrients from regolith and bedrock (the “geogenic nutrient pathway”). However, the prominence of this link is dependent on the efficiency of nutrient recycling from plant litter (the “organic nutrient cycle”). Isotope ratios of strontium (Sr), an element that behaves similarly to Ca in ecosystems, confer two types of information: radiogenic Sr isotopes inform as to the sources of Sr and the degree of weathering, while stable Sr isotopes constrain partitioning between compartments of the Critical Zone (bedrock, water, secondary solids, and plants). To date, however, neither the reactions nor the mass balance between compartments that fractionate Sr isotopes, nor the fractionation factors involved, are well understood. Here, we present geochemical budgets of Sr (using radiogenic and stable Sr isotopes, and Ca/Sr ratios) at four sites along a substantial climate and primary production gradient in the coastal mountains of Chile. We found that Sr release through weathering is isotopically congruent, and released Sr is not strongly isotopically fractionated either during secondary mineral formation or transfer into the exchangeable pool. Despite this, the 88Sr/86Sr ratio of bio-available Sr, which should reflect the ratio of dissolved Sr, is higher than that of rock and regolith. We propose that this offset is caused by plants: while 88Sr/86Sr in plant organs at the four study sites systematically increased from roots towards their leaves, whole-plant Sr isotope compositions indicate preferential uptake of light Sr into plants (with a fractionation of up to −0.3‰ relative to the bio-available pool). Despite this strong biological fractionation, 88Sr/86Sr ratios in bio-available Sr do not covary with biomass production across our study sites, because with greater plant growth Sr is recycled more times after release by weathering – an isotope-neutral process. Rather, the loss of Sr from the ecosystem in solid organic material sets the isotope ratio of dissolved or bio-available Sr. Organic solids thus appear to constitute a significant export path of elements released during weathering, with the removal of solid plant debris reducing the recycling factor of Sr, and possibly that of other mineral nutrients too.

Growth Rates for Quahogs (Mercenaria mercenaria) in a Reduced Nitrogen Environment in Narragansett Bay, RI

Nitrogen is essential in sustaining estuarine ecosystems, particularly lower trophic levels and filter-feeding organisms. However, excess nitrogen is an often-cited cause of coastal ecosystem decline. One of the largest sources of nitrogen in Narragansett Bay, RI, is effluent from wastewater treatment facilities discharging into the head of the Bay. Beginning in 2005, nitrogen reductions at wastewater treatment facilities were implemented to minimize eutrophication and improve water quality. These reductions in nitrogen have led to speculation as to how the Narragansett Bay ecosystem will respond. The filter-feeding clam Mercenaria mercenaria (Quahog) is a prominent component of the Narragansett Bay ecosystem and an economically important resource in Rhode Island. In the northeastern United States, studies of several estuaries have linked nitrogen increases with increased phytoplankton concentrations and faster growth of Quahogs. We evaluated Quahog growth rates to assess how this species has responded to nutrient reductions in the bay. In 2016 and 2017, we collected and aged Quahogs from 6 sites in Narragansett Bay along a gradient of historical nitrogen loading and primary production. We found that Quahog growth rates still vary through space, as previously documented, but despite the recent 50% reduction in nitrogen loading to Narragansett Bay, rates were not significantly different from rates reported for Quahogs collected from 1984 and 2005. Our findings suggest that the reduced nitrogen has not had adverse impacts to Quahog growth, and this information can be used to inform the population's dynamics. However, ecosystem responses to the nutrient reductions are ongoing and the ecology of Quahogs should continue to be monitored to ensure the sustainability of this highly valued commercial and recreational fishery in Narragansett Bay.

Correction

Previous article FreeCorrectionLauri OksanenLauri OksanenDepartment of Arctic and Marine Biology, UiT–The Arctic University of Norway, Campus Alta, 9510 Alta, Norway; and Department of Biology, Section of Ecology, University of Turku, 20014 Turku, Finland Search for more articles by this author Original articleExploitation Ecosystems in Gradients of Primary ProductivityFull TextPDF Add to favoritesDownload CitationTrack CitationsPermissionsReprints Share onFacebookTwitterLinked InRedditEmailQR Code SectionsMoreIn the 1981 article by Oksanen et al. titled “Exploitation Ecosystems in Gradients of Primary Productivity” (American Naturalist 118:240–261), figure 2 has a potentially confusing technical flaw that should have been fixed decades ago. Figure 2 was intended to consist of three panels, laid side by side, as in the corrected figure 2. However, doing the artwork by hand was so challenging that I had to draw each panel on a separate A4 sheet. In response, the technical editors decided to publish the panels as if they were separate figures, which did improve the visual clarity of figure 2. Unfortunately, however, the legend explaining the entire figure 2 now landed under figure 2a. Moreover, the word “systems” was edited to the singular, which made it hard for the reader to guess that the first sentence refers to the entire figure 2. Here, figure 2 is laid out as initially intended.Figure 2. Carnivore (C), herbivore (H), and plant (P) systems at different points of the productivity (G) axis. Unstable equilibrium is a solid dot; stable equilibrium is a dot with a star. a, An unproductive system where the plant isocline (the rightward-sloping surface) remains well below the carnivore isocline. The herbivore isocline (the surface bending backward from the plane of the page) crosses the plant isocline on the right side of its hump and in the C=0 plane, creating a stable herbivore-plant equilibrium. b, A system where the potential primary productivity has twice the value it had in figure 2a. The herbivore-plant equilibrium is unstable, so that sustained cyclic changes in plant and herbivore density are to be expected. c, Here the potential productivity is 1.25 times that of the system in figure 2b. A locally stable carnivore-herbivore-plant equilibrium has been established.View Large ImageDownload PowerPointMoreover, the article contains two confusing typos on page 255, in the first line of the last paragraph. The numbers of the figures referred to are incorrect. The line ought to be as follows: “A comparison between figure 3 and figure 5 suggests further observations.” Previous article DetailsFiguresReferencesCited by The American Naturalist Volume 195, Number 6June 2020 Published for The American Society of Naturalists Article DOIhttps://doi.org/10.1086/708807 Views: 180 HistorySubmitted February 11, 2020Published online April 06, 2020 © 2020 by The University of Chicago. All rights reserved. Crossref reports no articles citing this article.Related articlesExploitation Ecosystems in Gradients of Primary Productivity15 Oct 2015The American Naturalist

Alpha and beta diversity patterns of polychaete assemblages across the nodule province of the eastern Clarion-Clipperton Fracture Zone (equatorial Pacific)

Abstract. In the abyssal equatorial Pacific Ocean, most of the seafloor of the Clarion-Clipperton Fracture Zone (CCFZ), a 6 million km2 polymetallic nodule province, has been preempted for future mining. In light of the large environmental footprint that mining would leave and given the diversity and the vulnerability of the abyssal fauna, the International Seabed Authority has implemented a regional management plan that includes the creation of nine Areas of Particular Environmental Interest (APEIs) located at the periphery of the CCFZ. The scientific principles for the design of the APEIs were based on the best – albeit very limited – knowledge of the area. The fauna and habitats in the APEIs are unknown, as are species' ranges and the extent of biodiversity across the CCFZ. As part of the Joint Programming Initiative Healthy and Productive Seas and Oceans (JPI Oceans) pilot action “Ecological aspects of deep-sea mining”, the SO239 cruise provided data to improve species inventories, determine species ranges, identify the drivers of beta diversity patterns and assess the representativeness of an APEI. Four exploration contract areas and an APEI (APEI no. 3) were sampled along a gradient of sea surface primary productivity that spanned a distance of 1440 km in the eastern CCFZ. Between three and eight quantitative box cores (0.25 m2; 0–10 cm) were sampled in each study area, resulting in a large collection of polychaetes that were morphologically and molecularly (cytochrome c oxidase subunit I and 16S genes) analyzed. A total of 275 polychaete morphospecies were identified. Only one morphospecies was shared among all five study areas and 49 % were singletons. The patterns in community structure and composition were mainly attributed to variations in organic carbon fluxes to the seafloor at the regional scale and nodule density at the local scale, thus supporting the main assumptions underlying the design of the APEIs. However, the APEI no. 3, which is located in an oligotrophic province and separated from the CCFZ by the Clarion Fracture Zone, showed the lowest densities, lowest diversity, and a very low and distant independent similarity in community composition compared to the contract areas, thus questioning the representativeness and the appropriateness of APEI no. 3 to meet its purpose of diversity preservation. Among the four exploration contracts, which belong to a mesotrophic province, the distance decay of similarity provided a species turnover of 0.04 species km−1, an average species range of 25 km and an extrapolated richness of up to 240 000 polychaete species in the CCFZ. By contrast, nonparametric estimators of diversity predict a regional richness of up to 498 species. Both estimates are biased by the high frequency of singletons in the dataset, which likely result from under-sampling and merely reflect our level of uncertainty. The assessment of potential risks and scales of biodiversity loss due to nodule mining thus requires an appropriate inventory of species richness in the CCFZ.

Use of untargeted metabolomics for assessing soil quality and microbial function

Soils support a wide range of ecosystem services that underpin Earth system functioning. It is therefore essential that we have robust approaches to evaluate how anthropogenic perturbation affects soil quality and the delivery of these services. Metabolomics, the large-scale study of low molecular weight organic compounds in soil, offers one potential approach to characterise soils and evaluate the metabolic status of the soil biological community. The aims of the present study were to 1) characterise the soil metabolome across a contrasting range of soil types, 2) understand the relationships between common chemical and physical soil quality indicators and its metabolome, and 3) evaluate the discriminatory power of soil metabolomics and its potential use as a soil quality indicator. Nine different topsoils with 5 replications were collected along an altitudinal primary productivity gradient encompassing a wide range of soil types and land uses. Metabolites were extracted from soil using 3:3:2 (v/v/v) acetonitrile:isopropanol:water and individual compounds identified using a gas chromatography-mass spectrometry (GC-MS) platform. Overall, 405 individual compounds were detected, of which 146 were positively identified, including sugars, amino acids, organic acids, nucleobases, sugar alcohols, lipids and a range of secondary metabolites. The concentration and profile of metabolites was found to vary greatly between the soil types. Further, the soils’ metabolomic fingerprints correlated to a number of environmental factors, including pH, land-use, moisture and salinity. We also tentatively attributed soil-specific metabolites to potential functional pathways, although complementary proteomic, genomic and transcriptomic approaches would be needed to provide definitive supporting evidence. In conclusion, soil metabolomics offers the potential to reveal the complex molecular networks and metabolic pathways operating in the soil microbial community and a means of evaluating soil function. Further work is now required to benchmark soil metabolomes under a wide range of management regimes so that they can be used for the quantitative assessment of soil quality.

Foraging consistency of coral reef fishes across environmental gradients in the central Pacific.

We take advantage of a natural gradient of human exploitation and oceanic primary production across five central Pacific coral reefs to examine foraging patterns in common coral reef fishes. Using stomach content and stable isotope (δ15N and δ13C) analyses, we examined consistency across islands in estimated foraging patterns. Surprisingly, species within the piscivore-invertivore group exhibited the clearest pattern of foraging consistency across all five islands despite there being a considerable difference in mean body mass (14g-1.4kg) and prey size (0.03-3.8g). In contrast, the diets and isotopic values of the grazer-detritivores varied considerably and exhibited no consistent patterns across islands. When examining foraging patterns across environmental contexts, we found that δ15N values of species of piscivore-invertivore and planktivore closely tracked gradients in oceanic primary production; again, no comparable patterns existed for the grazer-detritivores. The inter-island consistency in foraging patterns within the species of piscivore-invertivore and planktivore and the lack of consistency among species of grazer-detritivores suggests a linkage to different sources of primary production among reef fish functional groups. Our findings suggest that piscivore-invertivores and planktivores are likely linked to well-mixed and isotopically constrained allochthonous oceanic primary production, while grazer-detritivores are likely linked to sources of benthic primary production and autochthonous recycling. Further, our findings suggest that species of piscivore-invertivore, independent of body size, converge toward consuming low trophic level prey, with a hypothesized result of reducing the number of steps between trophic levels and increasing the trophic efficiency at a community level.

Niche width expansion of coral reef fishes along a primary production gradient in the remote central Pacific

Niche width expansion of coral reef fishes along a primary production gradient in the remote central Pacific

Phytoplankton communities in the crater lakes of western Uganda, and their indicator species in relation to lake trophic status

Abstract The freshwater crater lakes of western Uganda represent an important natural resource for the region’s rural communities, but their capacity to provide drinking-quality water and other ecosystem services is being threatened by rapidly intensifying human activity within their catchments. This study investigated the relationship between the composition of pelagic phytoplankton communities in these lakes and their trophic status, to assess how phytoplankton surveys with recognition of indicator species can assist in the assessment of water-resource vulnerability to human impact. For this purpose we analyzed 70 phytoplankton samples with linked environmental data from 26 crater lakes spanning the entire regional gradients of primary productivity and land-use intensity, with each lake sampled two to four times and during both dry and rainy seasons. At this equatorial location, nutrient concentrations and phytoplankton biomass (measured as the concentration of chlorophyll-a) showed no consistent seasonal pattern. In total we recorded 118 phytoplankton taxa from 72 genera, and from 20 to 54 taxa per lake. The phytoplankton community of most lakes and in most seasons was dominated by cyanobacteria (on average 78% of total cell counts) followed by green algae (17%) and diatoms (4%); euglenophytes, dinoflagellates, chrysophytes and cryptophytes together contributed less than 1% on average. Many species were found to have a wide distribution along the productivity gradient, which complicated characterization of phytoplankton communities typical of different trophic states. Cluster analysis revealed four groups of samples, of which two broadly represented the least and most highly productive lakes. The two other groups comprised a mixture of lakes with intermediate productivity, suggesting that phytoplankton composition in these lakes is structured by other factors in addition to nutrient availability. In total 25 taxa displayed a significant association with one of these groups, but only 12 of them can be considered robust indicators of a particular trophic level; among these, the cyanobacteria Planktolyngbya limnetica and Microcystis aeruginosa qualify as strong indicator species for lakes with low and high productivity, respectively. Based on the distributional turnover between indicator species, we propose that the fresh Ugandan crater lakes comprise four trophic levels, of which the boundaries are situated higher up the chlorophyll-a gradient than those between the four classic trophic levels defined for temperate-region lakes. For practical use, Ugandan crater lakes with a chlorophyll-a concentration up to 6 µg/L can be defined as oligotrophic; similarly, we situate the mesotrophic/eutrophic boundary at ca 20 µg/L, and the eutrophic/hypertrophic boundary at ca 60 µg/L.

Organic matter supply and bacterial community composition predict methanogenesis rates in temperate lake sediments

AbstractThe objective of our study was to identify environmental conditions that structure lake sediment microbial communities and determine whether community composition explained inter‐lake variation in potential methanogenesis rates. We performed a comparative analysis of microbial communities and methanogenesis rates in 14 lake sediments along gradients of pH and primary productivity. Variation in methanogen community composition and non‐methanogen microbial community composition was best explained by pH and sediment organic matter content. However, these regulators of methanogen community structure were not associated with differences in methanogenesis rates. Instead, variation in lake methanogenesis rates was best explained by proxies for organic matter supplied to sediments (lake chlorophyll a concentration and sediment pore‐water total phosphorus) and the composition of the non‐methanogen microbial community. Our results suggest a role for sediment bacterial community in influencing methanogenesis via the supply of growth substrates.

Seasonal modulation of mesoscale processes alters nutrient availability and plankton communities in the Red Sea

Hydrographic and atmospheric forcing set fundamental constraints on the biogeochemistry of aquatic ecosystems and manifest in the patterns of nutrient availability and recycling, species composition of communities, trophic dynamics, and ecosystem metabolism. In the Red Sea, latitudinal gradients in environmental conditions and primary production have been ascribed to fluctuations in Gulf of Aden Water inflow, upwelling/mixing, and regenerated nutrient utilization i.e. rapidly recycled nitrogen in upper layers. However, our understanding of upper layer dynamics and related changes in plankton communities, metabolism and carbon and nitrogen export is limited. We surmised that stratification and mesoscale eddies modulate the nutrient availability and taxonomic identity of plankton communities in the Red Sea. Based on remote-sensing data of sea level anomalies and high resolution in situ measurements (ScanFish) we selected stations for hydrographic CTD profiles, water sampling (nutrients, seawater oxygen stable isotopes [δ18OSW]), phytoplankton and zooplankton collections. In fall 2014, strong stratification subjected the plankton community to an overall nitrogen and phosphorus shortage. The nutrient deficiency increased numbers of heterotrophic dinoflagellates, microzooplankton, and diazotrophs (Trichodesmium, diatom-diazotroph associations [DDAs]), albeit largely decreased phytoplankton and mesozooplankton abundances. In spring 2015, mesoscale eddies increased the nutrient availability, and the thermohaline characteristics and low δ18OSW point to the interaction of eddies with Gulf of Aden Surface Water (GASW). Cyclonic eddies and, most likely, the availability of nutrients associated with the GASW, increased the abundances of autotrophs (diatoms, Prasinophytes) and supported larger numbers of zooplankton and their larvae. We demonstrate that the interplay of stratification, advection of Gulf of Aden water and mesoscale eddies are key elements to better understand changes in plankton community composition, ecosystem metabolism, and macronutrient export in the Red Sea in space and time.

Pervasive iron limitation at subsurface chlorophyll maxima of the California Current

Subsurface chlorophyll maximum layers (SCMLs) are nearly ubiquitous in stratified water columns and exist at horizontal scales ranging from the submesoscale to the extent of oligotrophic gyres. These layers of heightened chlorophyll and/or phytoplankton concentrations are generally thought to be a consequence of a balance between light energy from above and a limiting nutrient flux from below, typically nitrate (NO3). Here we present multiple lines of evidence demonstrating that iron (Fe) limits or with light colimits phytoplankton communities in SCMLs along a primary productivity gradient from coastal to oligotrophic offshore waters in the southern California Current ecosystem. SCML phytoplankton responded markedly to added Fe or Fe/light in experimental incubations and transcripts of diatom and picoeukaryote Fe stress genes were strikingly abundant in SCML metatranscriptomes. Using a biogeochemical proxy with data from a 40-y time series, we find that diatoms growing in California Current SCMLs are persistently Fe deficient during the spring and summer growing season. We also find that the spatial extent of Fe deficiency within California Current SCMLs has significantly increased over the last 25 y in line with a regional climate index. Finally, we show that diatom Fe deficiency may be common in the subsurface of major upwelling zones worldwide. Our results have important implications for our understanding of the biogeochemical consequences of marine SCML formation and maintenance.