Primary Isotope Effect Research Articles

Niobic acid as a support for microheterogeneous nanocatalysis of sodium borohydride hydrolysis under mild conditions.

This study explores the stabilization by niobic acid, of Pt, Ni, Pd, and Au nanoparticles (NPs) for the efficient microheterogeneous catalysis of NaBH4 hydrolysis for hydrogen production. Niobic acid is the most widely studied Nb2O5 polymorph, and it is employed here for the first time for this key reaction relevant to green energy. Structural insights from XRD, Raman, and FTIR spectroscopies, combined with hydrogen production data, reveal the role of niobic acid's Brønsted acidity in its catalytic activity. The supported NPs showed significantly higher efficiency than the non-supported counterparts regarding turnover frequency, average hydrogen production rate, and cost. Among the tested NPs, PtNPs and NiNPs demonstrate the most favorable results. The data imply mechanism changes during the reaction, and the kinetic isotope assay indicates a primary isotope effect. Reusability assays demonstrate consistent yields over five cycles for PtNPs, although catalytic efficiency decreases, likely due to the formation of reaction byproducts.

Kinetic isotope effect study of N-6 methyladenosine chemical demethylation in bicarbonate-activated peroxide system.

N-6 methyladenosine is the most abundant nucleic acid modification in eukaryotes and plays a crucial role in gene regulation. The AlkB family of alpha-ketoglutarate-dependent dioxygenases is responsible for nucleic acid demethylation. Recent studies have discovered that a chemical demethylation system using hydrogen peroxide and ammonium bicarbonate can effectively demethylate nucleic acids. The addition of ferrous ammonium sulfate boosts the oxidation rate by forming a Fenton reagent with hydrogen peroxide. However, the specific mechanism and key steps of this process remain unclear. In this study, we investigate the influence of ferrous ammonium sulfate concentration on the kinetic isotope effect (KIE) of the chemical demethylation system using LC-MS. As the concentration of ferrous ions increases, the observed KIE decreases from 1.377 ± 0.020 to 1.120 ± 0.016, indicating a combination of the primary isotope effect and inverse α-secondary isotope effect with the ion pairing effect. We propose that the initial hydrogen extraction is the rate-limiting step and observe a tight transition state structure in the formation of the hm6A process through the analysis of KIE trends. The concentration-dependent KIE provides a novel perspective on the mechanism of chemical demethylation and offers a chemical model for enzyme-catalyzed demethylation.

Silyl-Osmium(IV)-Trihydride Complexes Stabilized by a Pincer Ether-Diphosphine: Formation and Reactions with Alkynes.

Complex OsH4{κ3-P,O,P-[xant(PiPr2)2]} (1) activates the Si-H bond of triethylsilane, triphenylsilane, and 1,1,1,3,5,5,5-heptamethyltrisiloxane to give the silyl-osmium(IV)-trihydride derivatives OsH3(SiR3){κ3-P,O,P-[xant(PiPr2)2]} [SiR3 = SiEt3 (2), SiPh3 (3), SiMe(OSiMe3)2 (4)] and H2. The activation takes place via an unsaturated tetrahydride intermediate, resulting from the dissociation of the oxygen atom of the pincer ligand 9,9-dimethyl-4,5-bis(diisopropylphosphino)xanthene (xant(PiPr2)2). This intermediate, which has been trapped to form OsH4{κ2-P,P-[xant(PiPr2)2]}(PiPr3) (5), coordinates the Si-H bond of the silanes to subsequently undergo a homolytic cleavage. Kinetics of the reaction along with the observed primary isotope effect demonstrates that the Si-H rupture is the rate-determining step of the activation. Complex 2 reacts with 1,1-diphenyl-2-propyn-1-ol and 1-phenyl-1-propyne. The reaction with the former affords Os{C≡CC(OH)Ph2}2{=C=CHC(OH)Ph2}{κ3-P,O,P-[xant(PiPr2)2]} (6), which catalyzes the conversion of the propargylic alcohol into (E)-2-(5,5-diphenylfuran-2(5H)-ylidene)-1,1-diphenylethan-1-ol, via (Z)-enynediol. In methanol, the hydroxyvinylidene ligand of 6 dehydrates to allenylidene, generating Os{C≡CC(OH)Ph2}2{=C=C=CPh2}{κ3-P,O,P-[xant(PiPr2)2]} (7). The reaction of 2 with 1-phenyl-1-propyne leads to OsH{κ1-C,η2-[C6H4CH2CH=CH2]}{κ3-P,O,P-[xant(PiPr2)2]} (8) and PhCH2CH=CH(SiEt3).

Dicoordinate Au(I)-Ethylene Complexes as Hydroamination Catalysts.

A series of gold(I)–ethylene π-complexes containing a family of bulky phosphine ligands has been prepared. The use of these sterically congested ligands is crucial to stabilize the gold(I)–ethylene bond and prevent decomposition, boosting up their catalytic performance in the highly underexplored hydroamination of ethylene. The precatalysts bearing the most sterically demanding phosphines showed the best results reaching full conversion to the hydroaminated products under notably mild conditions (1 bar of ethylene pressure at 60 °C). Kinetic analysis together with density functional theory calculations revealed that the assistance of a second molecule of the nucleophile as a proton shuttle is preferred even when using an extremely congested cavity-shaped Au(I) complex. In addition, we have measured a strong primary kinetic isotopic effect that is consistent with the involvement of X–H bond-breaking events in the protodeauration turnover-limiting step.

Stable isotope fractionation associated with the synthesis of hexachlorocyclohexane isomers for characterizing sources

The stable isotope fingerprints of hexachlorocyclohexane (HCH) isomers have potential for identifying sources as they are related to the synthesis processes and isotopic compositions of raw materials. However, the isotopic fractionation associated with the synthesis processes has not been investigated. Therefore, photochemical synthesis experiments using benzene and chlorine gas were conducted to characterize the associated isotopic fractionation under different conditions. Different patterns of isotopic fractionation factors (αC, αCl, and αH) were observed in each experiment. The large variability of αH is related to the accumulating secondary hydrogen isotope effects or the rearrangement of C–H bonds at the cyclohexane ring. An increase of δ13C and δ37Cl values of HCH isomers was observed during synthesis, which is related to the C–Cl bond formation in the radical dichlorination forming HCH and the subsequent chlorine substitution forming heptachlorocyclohexanes. The large variability of δ2H values is related to the secondary and primary hydrogen isotope effects. Different δ13C, δ37Cl and δ2H values among HCH isomers were observed, indicating that conformational complexity of HCH caused by arrangement of C–Cl bonds in planar and axial positions also influence the isotope values. The understanding of isotopic fractionation during HCH synthesis can be indicative for source identification in the field.

Amide directed iridium C(sp3)–H borylation catalysis with high N-methyl selectivity

A bidentate monoanionic ligand system was developed to enable iridium catalyzed C(sp3)–H activation borylation of N-methyl amides. Borylated amides were obtained in moderate to good isolated yields, and exclusive mono-borylation allowed the amide to be the limiting reagent. Selectivity for C(sp3)–H activation was demonstrated in the presence of sterically available C(sp3)–H bonds. Competitive kinetic isotope studies revealed a large primary isotope effect, implicating C–H activation as the rate limiting step.

A Spectroscopic Overview of Intramolecular Hydrogen Bonds of NH…O,S,N Type.

Intramolecular NH…O,S,N interactions in non-tautomeric systems are reviewed in a broad range of compounds covering a variety of NH donors and hydrogen bond acceptors. 1H chemical shifts of NH donors are good tools to study intramolecular hydrogen bonding. However in some cases they have to be corrected for ring current effects. Deuterium isotope effects on 13C and 15N chemical shifts and primary isotope effects are usually used to judge the strength of hydrogen bonds. Primary isotope effects are investigated in a new range of magnitudes. Isotope ratios of NH stretching frequencies, νNH/ND, are revisited. Hydrogen bond energies are reviewed and two-bond deuterium isotope effects on 13C chemical shifts are investigated as a possible means of estimating hydrogen bond energies.

OXIDATION OF DIOLS BY MORPHOLINIUM FLUOROCHROMATE: A KINETIC AND MECHANISTIC STUDY

The kinetics of oxidation of diols by morpholinium fluorochromate (MFC) has been studied in dimethyl sulfoxide (DMSO). Corresponding hydroxy carbonyl compounds are the main product of oxidation. The reaction is first order in MFC and follows Michaelis-Menten type of kinetics with respect to diols. The reaction is catalyzed by H+ ions. The hydrogen ion dependence has the form: kobs =a+ b[H+]. Oxidation of deuterated ethylene glycol showed substantial primary kinetic isotopic effect (kH / kD = 5.750 at 298 K). Thermodynamic parameters like enthalpy, entropy and free energy of activation are discussed and validity of the isokinetic relationships also established. We have used nineteen different organic solvents for carrying out our analysis. Taft and Swain’s multiparametric equations have been used for the solvent effect analysis. In our experiments rate constants have showed excellent correlation with Taft's Σσ* values along with negative values for the reaction constant ρ*. A suitable mechanistic pathway for the chromate ester formation has also been suggested.

Kinetic UV-Vis Spectroscopic and DFT Mechanistic Study of the Redox Reaction of [OsVIIIO4(OH)n]n- (n = 1, 2) and Methanol in a Basic Aqueous Matrix.

This combined experimental and computational study builds on our previous studies to elucidate the reaction mechanism of methanol oxidation by OsVIII oxido/hydroxido species (in basic aqueous media) while accounting for the simultaneous formation of OsVII species via a comproportionation reaction between OsVIII and OsVI. UV-Vis spectroscopy kinetic analyses with either CH3OH or the deuterated analogue CD3OH as a reducing agent revealed that transfer of α-carbon-hydrogen of methanol is the partial rate-limiting step. The resulting relatively large KIE value of approximately 11.82 is a combination of primary and secondary isotope effects. The Eyring plots for the oxidation of these isotopologues of methanol under the same reaction conditions are parallel to each other and hence have the same activation enthalpy [Δ⧧H° = 14.4 ± 1.2 kcal mol-1 (CH3OH) and 14.5 ± 1.3 kcal mol-1 (CD3OH)] but lowered activation entropy (Δ⧧S°) from -12.5 ± 4.1 cal mol-1 K-1 (CH3OH) to -17.1 ± 4.4 cal mol-1 K-1 (CD3OH). DFT computational studies at the PBE-D3 level with QZ4P (Os) and pVQZ (O and H) basis sets provide clear evidence to support the data and interpretations derived from the experimental kinetic work. Comparative DFT mechanistic investigations in a simulated aqueous phase (COSMO) indicate that methanol and OsVIII first associate to form a noncovalent adduct bound together by intermolecular H-bonding interactions. This is followed by spin-forbidden α-carbon-hydrogen transfer (not O-H transfer) from methanol to OsVIII by means of HAT, which is found to be the partial rate-limiting step. Without the organic and inorganic fragments dissociating from each other during the entire stepwise redox reaction (in order to avoid formation of highly energetically unfavorable monomer species), the HAT step is followed by PT and then ET before the final product monomers formaldehyde and OsVI dissociate from each other. DFT-calculated Δ⧧H° is within 5 kcal mol-1 of the experimentally obtained value, while the DFT Δ⧧S° is three times larger than that found from the experiment.

The Cyclization of Allenyl‐Substituted Hydroxylamines to 1,2‐Oxazines: an Experimental and Computational Study

To gain a deeper understanding of the formation of the synthetically important 3,6‐dihydro‐2H‐1,2‐oxazines, the 6‐endo‐trig cyclization of allenyl‐substituted hydroxylamines was experimentally investigated in detail employing a model compound. The solvent effect was moderate with respect to the rate, but crucial to suppress side‐product formation. Surprisingly, acids or bases had no big influence on the cyclization rate. With O‐deuterated allenyl hydroxylamine a high primary isotope effect was found, indicating that the proton transfer is crucial in the rate‐determining step. DFT calculations evidence that the allenyl‐substituted hydroxylamine is converted into an energetically similar zwitterionic intermediate with an allyl cation subunit. It cyclizes to the 1,2‐oxazine as the most stable species. Alternative pathways starting from the zwitterion were computationally investigated. Interestingly, it can also undergo a fragmentation to give a pentadiene derivative and a nitroso compound. The hetero Diels–Alder reaction of these components may also deliver the 1,2‐oxazine. To evaluate an alternative mechanistic scenario, calculations of the protonated allenyl‐substituted hydroxylamine were also performed.

Isomerization of Epoxides into Allylic Alcohols Catalyzed by Supported Au Nanoparticles on TiO2: A Mechanistic Insight.

Based on primary and β-secondary isotope effects, it is established that the isomerization of epoxides into allylic alcohols catalyzed by supported Au nanoparticles proceeds via an unsymmetrical concerted transition state in which there is partial positive charge developing on the C-O carbon atom progressing C-H abstraction. A carbocationic intermediate can be formed only in cases of sufficient stabilization of the positive charge by appropriate substituents.

Mechanistic Interrogation of Alkyne Hydroarylations Catalyzed by Highly Reduced, Single-Component Cobalt Complexes.

Highly reactive catalysts for ortho-hydroarylations of alkynes have previously been reported to result from activation of CoBr2 by Grignard reagents, but the operative mechanism and identity of the active cobalt species have been undefined. A mechanistic analysis of a related system, involving hydroarylations of a (N-aryl)aryl ethanimine with diphenylacetylene, was performed using isolable reduced Co complexes. Studies of the stoichiometric reaction of Co(I) or Co(II) precursors with CyMgCl implicated catalyst initiation via a β-H elimination/deprotonation pathway. The resulting single-component Co(-I) complex is proposed as the direct pre-catalyst. Michaelis-Menten enzyme kinetic studies provide mechanistic details regarding the catalytic dependence on substrate. The (N-aryl)aryl ethanimine substrate exhibited saturation-like behavior, whereas alkyne demonstrated a complex dependency; rate inhibition and promotion depend on the relative concentration of alkyne to imine. Activation of the aryl C-H bond occurred only in the presence of coordinated alkyne, which suggests operation of a concerted metalation-deprotonation (CMD) mechanism. Small primary isotope effects are consistent with a rate-determining C-H cleavage. Off-cycle olefin isomerization catalyzed by the same Co(-I) active species appears to be responsible for the observed Z-selectivity.

Oxidative Transformations of Aliphatic Alcohols using Ce (IV)- Kinetic and Mechanistic Study

The kinetics of oxidation of aliphatic alcohols (like methanol and 1-propanol) by [CAN] in acetonitrile medium results in the formation of corresponding aldehyde. The reaction is first order with respect to [CAN], [acid], [alcohol]. The rate of reaction increases with a decrease in the polarity of solvent indicating an ion-dipole interaction in the slow slep.The reactions exhibit no primary kinetics isotope effect and positive polymerization test observed. The activation parameters has been calculated

Thermal rate coefficients and kinetic isotope effects of the reaction HO + H2O → H2O + OH

Hydrogen-transfer reactions take place in a wide range of chemically active environments. In this work, thermal rate coefficients of the prototypical hydrogen-transfer reaction HO + H2O → H2O + OH and its various isotopologues are computed using both tunneling-corrected transition state and quasi-classical trajectory methods on a recently developed global potential energy surface. On the one hand, the calculated rate coefficients and kinetic isotope effects agree well with available experimental results, indicating the high fidelity of the potential energy surface. On the other hand, the observed normal primary and inverse secondary kinetic isotope effects appear to be prevalent in hydrogen abstraction reactions, which are rationalized by the change of classical and adiabatic minimum energy paths. In addition, there exists strong non-Arrhenius behavior at low temperatures due to the significant quantum tunneling effect.

The isotope effect on impurities and bulk ion particle transport in the Large Helical Device

The isotope effect on impurities and bulk ion particle transport is investigated by using the deuterium, hydrogen, and isotope mixture plasma in the Large Helical Device (LHD). A clear isotope effect is observed in the impurity transport but not the bulk ion transport. The isotope effects on impurity transport and ion heat transport are observed as a primary and a secondary effect, respectively, in the plasma with an internal transport barrier (ITB). In the LHD, an ion ITB is always transient because the impurity hole triggered by the increase of ion temperature gradient causes the enhancement of ion heat transport and gradually terminates the ion ITB. The formation of an impurity hole becomes slower in the deuterium (D) plasma than the hydrogen (H) plasma. This primary isotope effect on impurity transport contributes the longer sustainment of the ion ITB state because the low ion thermal diffusivity can be sustained as long as the normalized carbon impurity gradient R/Ln,c, where , is above the critical value (∼−5). Therefore, the longer sustainment of the ITB state in the deuterium plasma is considered to be a secondary isotope effect due to the mitigation of the impurity hole. The radial profile of H and D ion density is measured using bulk charge exchange spectroscopy inside the isotope mixture plasma. The decay time of H ion density after the H-pellet injection and the decay time of D ion density after D-pellet injection are almost identical, which demonstrates that there is no significant isotope effect on ion particle transport.

Transition State Analysis of the Reaction Catalyzed by the Phosphotriesterase from Sphingobium sp. TCM1.

Organophosphorus flame retardants are stable toxic compounds used in nearly all durable plastic products and are considered major emerging pollutants. The phosphotriesterase from Sphingobium sp. TCM1 ( Sb-PTE) is one of the few enzymes known to be able to hydrolyze organophosphorus flame retardants such as triphenyl phosphate and tris(2-chloroethyl) phosphate. The effectiveness of Sb-PTE for the hydrolysis of these organophosphates appears to arise from its ability to hydrolyze unactivated alkyl and phenolic esters from the central phosphorus core. How Sb-PTE is able to catalyze the hydrolysis of the unactivated substituents is not known. To interrogate the catalytic hydrolysis mechanism of Sb-PTE, the pH dependence of the reaction and the effects of changing the solvent viscosity were determined. These experiments were complemented by measurement of the primary and secondary 18-oxygen isotope effects on substrate hydrolysis and a determination of the effects of changing the p Ka of the leaving group on the magnitude of the rate constants for hydrolysis. Collectively, the results indicated that a single group must be ionized for nucleophilic attack and that a separate general acid is not involved in protonation of the leaving group. The Brønsted analysis and the heavy atom kinetic isotope effects are consistent with an early associative transition state with subsequent proton transfers not being rate limiting. A novel binding mode of the substrate to the binuclear metal center and a catalytic mechanism are proposed to explain the unusual ability of Sb-PTE to hydrolyze unactivated esters from a wide range of organophosphate substrates.

Photochemistry of the Stilbenes in Methanol. Trapping the Common Phantom Singlet State.

A comparative study of the photochemistry of cis- and trans-stilbene in methanol shows that both isomers undergo methanol photoaddition giving similar yields of α-methoxybibenzyl in competition with cis-trans photoisomerization. Methanol addition occurs primarily following torsional relaxation of the lowest excited singlet states of each isomer, 1 c* and 1 t*, to a common twisted singlet excited state intermediate, 1 p*, initially called the phantom singlet state. The addition is consistent with the zwitterionic character of 1 p*. Ether forms by direct 1,2-addition of CH3OH to the central carbon atoms and by 1,1-addition following rearrangement to 1-benzyl-1-phenylcarbene. Use of CD3OD and GC/MS (gas chromatographic/mass spectroscopic) analysis of the ether products revealed that the ratio of carbene/direct addition pathways is higher starting from cis-stilbene. We conclude that 1 p* formed from 1 c* is hotter than 1 p* formed from 1 t*. Surprisingly, except for favoring the carbene pathway, the use of higher energy photons (254 vs 313 nm) does not affect the overall ether quantum yield starting from cis-stilbene but significantly enhances both pathways starting from trans-stilbene. It appears that carbene formation and direct methanol addition to higher trans-stilbene excited state(s) compete with relaxation to S1. Substitution of D for the vinyl Hs of stilbene enhances the direct addition pathway more than 2-fold and strongly suppresses the carbene insertion pathway, revealing a large, kpcd0/ kped2 = 6.3, primary deuterium isotope effect in the carbene rearrangement. The 2-fold increase in the ether quantum yield is due primarily to a 2.75-fold increase in the lifetime of 1 p* on deuterium substitution of the vinyl hydrogens.

Proposed Proton-Transfer Mechanism for the Initial Decomposition Steps of BTATz.

The first steps in the gas-phase decomposition mechanism of N3,N6-bis (1 H-tetrazol-5-yl)-1,2,4,5-tetrazine-3,6-diamine, BTATz, anions and the kinetic isotope effects in these processes were studied using combined multistage mass spectrometry (MS/MS) and computational techniques. Two major fragmentation processes, the exergonic loss of nitrogen molecules and the endergonic loss of hydrazoic acid, were identified. The observation of a primary isotope effect supported by calculations suggests that the loss of a nitrogen molecule from the tetrazole ring involves proton migration, either to or within the terazole ring, as a rate-determining step. The fragmentation of a hydrazoic acid occurs through an asymmetrical retro-pericyclic reaction. Calculations show the relevance of these mechanisms to neutral BTATz. Our findings may contribute to the understanding of decomposition routes in these nitrogen-rich energetic materials and allow tailoring their reactivity and decomposition pathways for better control of performance.

H Isotope Effects in 6,7LiX (X=H, D, T)+H2O Deliquescence Reactions: a Quantum Chemistry Study

We performed theoretical investigation on mechanisms of LiD/LiH/LiT+H2O reactions with second order perturbation theory (MP2). Calculations of enthalpy change and reaction rate constant are in agreement with experimental data and other theoretical values. Results show that two reaction channels exist for LiD + H2O reaction, and channel 1 is the main reaction channel. Kinetic Isotope Effect (KIE) is not so large although fracture of isotope bond takes place in the reaction, which is noticeably different from theoretical maximums of primary isotope effect. Individual contributions of KIE effect are listed as follows ηvib >ηrot >ηtun >ηpot >ηtrans, indicating that main contribution of isotope effect results from vibration factor.

Kinetic Isotope Effects Provide Experimental Evidence for Proton Tunneling in Methylammonium Lead Triiodide Perovskites.

The occurrence of proton tunneling in MAPbI3 hybrid organic inorganic perovskites is demonstrated through the effect of isotopic labeling of the methylammonium (MA) component on the dielectric permittivity response. Deuteration of the ammonium group results in the acceleration of proton migration (inverse primary isotope effect), whereas deuteration of the methyl group induces a normal secondary isotope effect. The activation energies for proton migration are calculated to be 50 and 27 meV for the tetragonal and orthorhombic phases, respectively, which decrease upon deuteration of the ammonium group. The low activation barrier and the deviation from unity of the ratio of the pre-exponential factors (AH/AD = 0.3-0.4) are consistent with a tunneling mechanism for proton migration. Deuteration of the PEDOT:PSS hole transport layer results in a behavior that is intermediate between that of the deuterated and undeuterated perovskite, due to extrinsic ion migration between the two materials.