Presence Of Individual Species Research Articles

The Erosion of Seasonality in Avian Communities

ABSTRACTAimSeasonality governs species composition at a given place and time. However, the effects of climate and land‐use change can vary by season, altering species composition. These changes can lead to a loss of distinct seasonal community composition, representing a novel form of biotic homogenisation. We ask if breeding and winter bird communities are becoming more similar over time. If so, is homogenisation occurring more rapidly in winter than in the breeding season, and has the presence of individual species changed between seasons?LocationNortheastern United States.Time Period1989–2019.Major Taxa StudiedTwo hundred thirty‐eight bird species.MethodsWe use data from The National Audubon Society's Christmas Bird Count and the North American Breeding Bird Survey to test if winter and breeding bird communities have become more similar (homogenised). We evaluate this change using the Sørensen dissimilarity index, and its components of turnover (species replacement) and nestedness (a subset of a more species rich community) and describe the mechanism in which the seasonal winter and breeding bird communities are changing.ResultsWe found that winter and breeding bird communities are homogenising, driven by significant decrease in turnover and a marginal decrease nestedness. When viewing breeding and wintering communities separately, we observe different trends. Breeding communities are becoming more unique with decreasing turnover and nestedness. Winter communities are becoming more similar to each other, with decreasing turnover and nestedness. More breeding species are declining and species that are typically found in the winter and year‐round residents are the main contributors to the homogenisation between seasons.Main ConclusionsWe show for the first time homogenisation between winter and breeding bird communities over time across the northeastern United States. This insight into how individual species are faring between seasons, and how they impact community structure, can be used when implementing conservation measures for maintaining ecological functioning and integrity.

Stability of influenza A virus in droplets and aerosols is heightened by the presence of commensal respiratory bacteria.

Aerosol transmission remains a major challenge for control of respiratory viruses, particularly those causing recurrent epidemics, like influenza A virus (IAV). These viruses are rarely expelled alone, but instead are embedded in a consortium of microorganisms that populate the respiratory tract. The impact of microbial communities and inter-pathogen interactions upon stability of transmitted viruses is well-characterized for enteric pathogens, but is under-studied in the respiratory niche. Here, we assessed whether the presence of five different species of commensal respiratory bacteria could influence the persistence of IAV within phosphate-buffered saline and artificial saliva droplets deposited on surfaces at typical indoor air humidity, and within airborne aerosol particles. In droplets, presence of individual species or a mixed bacterial community resulted in 10- to 100-fold more infectious IAV remaining after 1 h, due to bacterial-mediated flattening of drying droplets and early efflorescence. Even when no efflorescence occurred at high humidity or the bacteria-induced changes in droplet morphology were abolished by aerosolization instead of deposition on a well plate, the bacteria remained protective. Staphylococcus aureus and Streptococcus pneumoniae were the most stabilizing compared to other commensals at equivalent density, indicating the composition of an individual's respiratory microbiota is a previously unconsidered factor influencing expelled virus persistence.IMPORTANCEIt is known that respiratory infections such as coronavirus disease 2019 and influenza are transmitted by release of virus-containing aerosols and larger droplets by an infected host. The survival time of viruses expelled into the environment can vary depending on temperature, room air humidity, UV exposure, air composition, and suspending fluid. However, few studies consider the fact that respiratory viruses are not alone in the respiratory tract-we are constantly colonized by a plethora of bacteria in our noses, mouth, and lower respiratory system. In the gut, enteric viruses are known to be stabilized against inactivation and environmental decay by gut bacteria. Despite the presence of a similarly complex bacterial microbiota in the respiratory tract, few studies have investigated whether viral stabilization could occur in this niche. Here, we address this question by investigating influenza A virus stabilization by a range of commensal bacteria in systems representing respiratory aerosols and droplets.

Comparative Analysis of Methods for Somatic Cell Counting in Cow's Milk and Relationship between Somatic Cell Count and Occurrence of Intramammary Bacteria.

The aim of this study was to compare three on-farm commercial methods for the indirect detection of subclinical mastitis in dairy cows: the California mastitis test (CMT), the Porta side somatic cell count milk test (Porta SCC), and the DeLaval cell counter (DCC), with the Fossomatic cell count (FSCC), and to evaluate the relationship between the determined somatic cell count SCC and the occurrence of intramammary pathogens in the milk of dairy cows. A total of 284 sensory unchanged mixed milk samples, collected during the milking on a dairy farm, were analyzed in this study for somatic cell counts by the mentioned on-farm tests. Quarter milk samples (n = 583) from all the selected cows were cultured. The agreement, sensitivity, and specificity of the three indirect commercial diagnostic tests (the CMT, the Porta SCC, and the DeLaval cell counter) were calculated, and the FSCC was used as the gold standard. The results were analyzed statistically using the Pearson correlation test and the paired t-test. The CMT matched with the FSCC in 83.1% of the samples, with the Porta SCC in 80.6%, and with the DCC in 80.3% of the samples. The sensitivity and specificity reached 81.0% and 92.9% for the CMT, 79.4% and 90.7% for the Porta SCC, and 75.8% and 97.5% for the DCC, respectively. The correlation between the FSCC and the Porta SCC was 0.86 (p < 0.0001), and between the FSCC and the DCC, it was 0.92 (p < 0.0001). The differences between them were insignificant. Bacteria were detected in 130 (22.3%) quarter milk samples. The most prevalent bacteria were Enterococcus spp. (36.2%), followed by E. coli (20%), coagulase-negative staphylococci (13.1%), A. viridans (9.2%), Streptococcus spp. (9.2%), Proteus spp. (6.2%), and S. intermedius (3.9%). Contagious isolates (S. aureus) were detected in 3 quarter milk samples (2.3%). The agreement between the individual tests and the microbiological culture was as follows: 69.2% for the CMT; 73.7% for the Porta SCC; 71.6% for the DCC; and 76.5% for the FSCC. Higher SCCs were detected in the milk samples contaminated with bacteria than in the healthy milk (p < 0.001). No significance was found between the presence of individual species of intramammary pathogens and the different levels of SCCs. Based on the results, bacteria are the predominant cause of subclinical mastitis. The increased SCC of some milk samples with no presence of bacteria meant that the increase could have been caused by numerous other agents (viruses, fungi, or algae) or factors for mastitis in the dairy industry.

Residential bacteria and fungi identified by high-throughput sequencing and childhood respiratory health

The objective of this study was to examine and compare environmental microbiota from dust and children's respiratory health outcomes at ages seven and twelve. At age seven, in-home visits were conducted for children enrolled in the Cincinnati Childhood Allergy and Air Pollution Study (CCAAPS). Floor dust was collected and analyzed for bacterial (16S rRNA gene) and fungal (internal transcribed spacer region) microbiota. Respiratory outcomes, including physician-diagnosed asthma, wheeze, rhinitis, and aeroallergen sensitivity were assessed by physical examination and caregiver-report at ages seven and twelve. The associations between dust microbiota and respiratory outcomes were evaluated using Permanova, DESeq, and weighted quantile sum (WQS) regression models. Four types of WQS regression models were run to identify mixtures of fungi or bacteria that were associated with the absence or presence of health outcomes. For alpha or beta diversity of fungi and bacteria, no significant associations were found with respiratory health outcomes. DESeq identified specific bacterial and fungal indicator taxa that were higher or lower with the presence of different health outcomes. Most individual indicator fungal species were lower with asthma and wheeze and higher with aeroallergen positivity and rhinitis, whereas bacterial data was less consistent. WQS regression models demonstrated that a combination of species might influence health outcomes. Several heavily weighted species had a strong influence on the models, and therefore, created a microbial community that was associated with the absence or presence of asthma, wheeze, rhinitis, and aeroallergen+. Weights for specific species within WQS regression models supported indicator taxa findings. Health outcomes might be more influenced by the composition of a complex mixture of bacterial and fungal species in the indoor environment than by the absence or presence of individual species. This study demonstrates that WQS is a useful tool in evaluating mixtures in relation to potential health effects.

Size does matter: Passive sampling in urban parks of a regional bat assemblage

We studied the occurrence of bats in urban parks in the city of Madrid (Spain), and the resulting patterns were compared with bat occurrence in the surrounding region. In this way, we addressed if the presence of individual species in the study parks was positively related to their regional occurrence and the way some geographical and environmental traits affected bat richness and composition in urban parks. We analysed urban parks varying in area, structure and distance to the edge of the town. During two years, bats occurring in parks were sampled using ultrasound detectors. A similar sampling method was carried out for four years in the countryside around the city to detect the regional pool of species. The results show that the occurrence of individual species in urban parks was a reduced sample of the regional pool of species and that there was a positive relationship between the occurrence of species in urban parks and the surrounding countryside. This pattern suggests that the more distributed bats at a regional scale were the most frequent ones in parks within the urban matrix. Park area was the main determinant of bat richness. In addition, bat richness distribution reported a nested pattern of species loss as park area decreased. This suggests that bat occurrence in the study parks can be interpreted as the results of a passive sampling of individual species occurring at the regional scale, and that park size was the main determinant of the species occurrence. We conclude that more proactive approaches to bat conservation could be carried out in order to improve the presence of some rare species in urban parks.

Patterns of bird species richness at two sampling scales in the Karoo biome of South Africa

Species richness has become the common currency of studies of biodiversity. Here we consider measures of species richness for the birds of the arid Karoo region of South Africa. We measured species richness at two scales: at the broad-scale using pentads (5 × 5′); and at the fine scale, using point counts to determine important landscape features. Point counts within randomly selected pentads were conducted throughout the two biomes that comprise the Karoo (Succulent and Nama). Features at points were used to model covariates of species richness at the fine scale, while the total number of unique species from counts was used as the dependent variable at the broad scale. We considered determinants of total species richness; and the subset of ten bird species endemic to the Karoo. Finally, we modelled covariates of presence for 100 of the most common bird species. We found increasing vegetation height and decreasing sand-cover best explain total species richness, while lower Prosopis sp cover and increasing altitude explained endemic species richness at the broad scale. At the finer scale, presence of water and farmsteads were associated with highest general species richness, but with lower numbers of endemics. The presence of water, a ‘green’ score, sand cover and topography were identified as the most important variables explaining presence of individual species, but often with contrasting effects between species. We conclude that patterns of endemic bird species richness were explained by different variables compared to total species richness. We expect this information will inform landholders, wildlife managers and conservation practitioners in this unique arid zone environment.

Environmental drivers of mollusc assemblage diversity in a system of lowland lentic habitats

Freshwater mollusc diversity has repeatedly been found to peak in lowland stagnant waters, which are highly exposed to human-made degradation and the spread of non-native species. Despite the increasing loss of these habitats, little is known about the main predictors of their mollusc diversity patterns. Therefore, we aimed to determine the environmental drivers of mollusc assemblage variation between and within sites by sampling 62 water bodies in the Dyje River floodplain (south-eastern Czechia). We measured 14 environmental variables, categorized as site-specific or plot-specific. Species richness and abundances were analysed by GLM and GEE; species compositional variance was assessed by NMDS and db-RDA ordinations. Mollusc species richness, ranging between 0 and 15 species per site, and abundance sharply decreased towards high trophy sites, with the chlorophyll-a concentration and water pH highly correlated with species counts. Species compositional variation was driven mainly by water trophy and the quality of organic detritus. Site heterogeneity turned out to significantly control local assemblages of molluscs, while the presence of individual species seemed to be filtered by site trophy and the shoreline length. Thus, to maintain high regional diversity of aquatic molluscs in lowland agricultural landscapes, the presence of low trophy sites seems to be essential.

Opportunities for biodiversity conservation outside of Gorongosa National Park, Mozambique: A multispecies approach

Habitat loss and fragmentation threaten wildlife and ecosystems across the globe, especially in multi-use landscapes outside of protected areas, which are ubiquitous. Amid rapid land-use changes in Africa especially, managers need tools to prioritize conservation efforts outside of protected areas. We studied how human activities affect the distribution and composition of a medium-to-large sized mammalian community with various habitat requirements in a sustainable-use forestry concession in central Mozambique. We deployed 75 motion-detecting cameras from June to October 2017, and photographed 30 mammalian species. We used hierarchical, multi-species occupancy models to estimate species richness at each station and compared the relative effects of natural and anthropogenic features on the presence of individual species and groups of species when categorized into taxonomic/functional groups and body size groups. Predicted richness at each station varied from 3 to 17 species, and both human and natural parameters varied in their importance for the occupancy likelihood for different animals. When species were grouped by taxonomies and diets, settlement proximity negatively affected the occupancies of carnivores, insectivores, and other foragers. Similarly, settlement proximity negatively affected the occupancies of species in all body size groups. However, active roads and human activity rates did not have a statistically significant relationship with any species' occupancies or detection rates, respectively. Overall, mammalian richness was highest far from human settlements in the concession and close to rivers. Building on scant knowledge of wildlife communities across mosaics of different land uses, our results shed light on understudied species assemblages to guide conservation efforts in Mozambique.

Fish community response to habitat variables in two restored side channels of the lower Platte River, Nebraska

AbstractAnthropogenic alterations to large rivers ranging from impoundments to channelization and levees have caused many rivers to no longer access the floodplain in a meaningful capacity. Floodplain habitats are important to many riverine fishes to complete their life‐history strategies. The fish community and species of fish that inhabit floodplain habitats are often dictated by the type of habitat and the conditions within that habitat (e.g., temperature, water velocity, depth, and discharge). As mitigation and restoration projects are undertaken, it is imperative that managers understand how various habitat components will affect the fish community in floodplain habitats. We collected fish and habitat data from two restored side channels with different structural designs on the lower Platte River, Nebraska, to determine how habitat variables predicted species diversity and individual species presence. We found a decrease in discharge in the main‐stem river resulted in increased diversity in one of the side channels, with the greatest diversity values occurring during summer. No habitat variables performed well for predicting fish species diversity for an adjacent side channel with more uniform depth and velocity and no groundwater inputs. However, several native riverine fish species in this side channel were shown to be associated with high temperature, dissolved oxygen, main‐stem discharge, and discharge variability. These results highlight the importance of considering the physical design of restored floodplain habitats when attempting to enhance fish communities.

Utilizing statistical significance in fuzzy interval-valued evidence sets for assessing artificial reef structure impact

Artificial reefs are often formed by reef balls, oil rigs, either toppled or partially removed, and sunken vessels. Data gathered from observations made in the Gulf of Mexico off the Texas coast were statistically analyzed to investigate the impact of type of structure on fish presence, abundance and species observed. Environmental variables were controlled, and crosstabulations between various structure material-type categories were conducted for the most frequently observed species. Based on Chi-square tests of significance, a fuzzy interval-valued evidence model was developed such that different types of artificial reef structures were compared to determine to what extent each structure was likely to impact fish presence and abundance of species. Results indicate that all materials have been at least somewhat impactful, but the most impact on the presence of individual species has been the oil and gas jackets. A fuzzy goal-driven extension found that potential costs associated with each material may affect reef material selection decision making.

Legionella contamination in warm water systems: A species-level survey.

Legionellae constitute a frequent contamination of warm water systems and can lead to serious infections. Therefore, in many countries it is mandatory to monitor warm water systems for their presence. The method of examination in Germany is regulated by guideline ISO 11731 and DIN EN ISO 11731-2, and the results are reported as concentration of Legionella spp. Only limited information is available on the presence of individual species of Legionellae in the examined systems, since most investigations and research focus solely on Legionella pneumophila as the most important human pathogen. In this study 76,220 samples obtained from 13,397 warm water systems originating from 24 different zip code districts covering an area of more than 71,000km2 in southern Germany were examined. This resulted in the identification of 47,924 Legionella isolates to the species level using a MALDI-TOF mass spectrometry-based method. Legionella species distribution was analyzed with respect to warm water system type, geographic region (defined as zip code district) and temperature during sample taking. Overall, 20.7% of the samples were found positive for Legionella species and 14 different species of Legionella were recovered. These were not equally present throughout the geographic area investigated, but instead an individual regional diversity of Legionella species was observed for the examined zip code districts. Although Legionella pneumophila represented 84% of all contaminations found, depending on the geographical region its proportion varied substantially between 57.5% and 91.2%. The occurrence of other species was also of importance since they accounted for up to 42% of contaminations regionally, with Legionella londiniensis being most prominent representing up to 38.8% of recovered colonies. In addition, the influence of temperature on the individual species was disparate, but the temperature range between 50°C and 59°C was identified as the optimal condition for facilitating emergence of the majority of recovered Legionella species. The identification of Legionella to the species level by MALDI-TOF allowed for a more concise depiction of the regional distribution and the ecology of this genus, and may be of additional value when counter measures need to be initiated.

Increased Nasopharyngeal Density and Concurrent Carriage of Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis Are Associated with Pneumonia in Febrile Children.

BackgroundWe assessed nasopharyngeal (NP) carriage of five pathogens in febrile children with and without acute respiratory infection (ARI) of the upper (URTI) or lower tract, attending health facilities in Tanzania.MethodsNP swabs collected from children (N = 960) aged 2 months to 10 years, and with a temperature ≥38°C, were utilized to quantify bacterial density of S. pneumoniae (Sp), H. influenzae (Hi), M. catarrhalis (Mc), S. aureus (Sa), and N. meningitidis (Nm). We determined associations between presence of individual species, densities, or concurrent carriage of all species combination with respiratory diseases including clinical pneumonia, pneumonia with normal chest radiography (CXR) and endpoint pneumonia.ResultsIndividual carriage, and NP density, of Sp, Hi, or Mc, but not Sa, or Nm, was significantly associated with febrile ARI and clinical pneumonia when compared to febrile non-ARI episodes. Density was also significantly increased in severe pneumonia when compared to mild URTI (Sp, p<0.002; Hi p<0.001; Mc, p = 0.014). Accordingly, concurrent carriage of Sp+, Hi+, and Mc+, in the absence of Sa- and Nm-, was significantly more prevalent in children with ARI (p = 0.03), or clinical pneumonia (p<0.001) than non-ARI, and in children with clinical pneumonia (p = 0.0007) than URTI. Furthermore, Sp+, Hi+, and Mc+ differentiated children with pneumonia with normal CXR, or endpoint pneumonia, from those with URTI, and non-ARI cases.ConclusionsConcurrent NP carriage of Sp, Hi, and Mc was a predictor of clinical pneumonia and identified children with pneumonia with normal CXR and endpoint pneumonia from those with febrile URTI, or non-ARI episodes.

Techniques useful in two-dimensional correlation and codistribution spectroscopy (2DCOS and 2DCDS) analyses

Certain techniques useful in enhancing the features of two-dimensional correlation and codistribution spectra (2DCOS and 2DCDS) are reviewed. 2DCOS sorts out the coordinated or sequential variations of spectral intensities induced by an external perturbation applied to a sample system. 2DCDS is designed to determine the order of the presence of individual species. Pareto scaling of data helps to regulate overwhelmingly strong signal contributions, which may obscure the fine features of 2DCOS and 2DCDS spectra. Pearson unit-variance scaling has some limitations by itself but is useful in some applications. Modified forms of asynchronous 2D spectrum combine the features of both synchronous and asynchronous spectra and can be used as a stand-alone 2D map for the streamlined determination of the sequential order of spectral intensity variations. Null-space projection simplifies congested 2D spectra by eliminating select features, such as contribution from a specific component. Node attenuation is a band narrowing technique suitable for 2D analysis, because it does not produce opposite-sign side lobes. Performance of each technique in enhancing the features of 2D spectra is demonstrated with a model set of experimental spectra.

Factors Affecting the Presence and the Diversity of Bryophytes in the Petrifying Sources Habitat (7220) in Wallonia and the Brussels-Capital Region, Belgium

Bryological composition, water chemistry, and environmental factors were characterized on 67 Belgian travertines. We explore the relationship between these environmental factors and the community composition, species richness, or presence of individual species using Redundancy Analysis with Hellinger’s transformation (tb-RDA) or Generalized Linear Models (GLMs). The best variables explaining the community composition are slope, NO3, NH4, and PO4. The species richness is negatively related to canopy cover and PO4.Palustriella commutatatends to be more frequent when the slope is steeper and to a lesser degree when the canopy cover is lower.Eucladium verticillatumtends to be slightly more frequent when canopy cover and NH4concentrations are lower.Cratoneuron filicinumis more frequent at higher Mg concentrations andPellia endiviifoliais more frequent at lower PO4concentrations and higher NO3concentrations.Brachythecium rivulareshowed wide ecological amplitude and almost none of the tested environmental factors seem to be related to its presence. The study identifies eutrophication as the main factor responsible for habitat deterioration. Practical indications on the best ways to maintain or to enhance the quality of these petrifying sources are given.

Changes in Plant Species Composition and Structure in Two Peri-urban Nature Preserves over 10 Years

Peri-urban natural areas, at the boundaries of cities and adjacent agricultural/ rural land, are subject to ecological threats endemic to both land use types. We used permanent plots to document changes in habitat quality by monitoring herbaceous-layer plant species presence and cover over a decade (1996/97 and 2007) in two peri-urban nature preserves in central Indiana, U.S.A. The preserves are comprised of different forest community types: wet-mesic depressional forest and mesic upland forest. Habitat characteristics, based on Floristic Quality Assessment parameters, showed only a single change for either preserve between survey years: wetness values were lower in the wet-mesic depressional site in 2007 than in 1996, indicating more plants with affinity for wet soil. No changes in community structure (total species richness, evenness, and diversity) were found. The number of nonnative species increased between survey years, especially in the wet-mesic depressional forest, where numbers went from zero to six, five of which are classified as invasive. There was considerable turnover in individual species presence, with perennial forb species the most likely species to be found in only 1 y or the other. Species did not rearrange themselves within plots, but completely appeared or disappeared from all plots within a preserve between the sample years, suggesting that species composition of the flora is dynamic. Management recommendations, including those related to evidence of heavy deer browse, are presented based on our findings. Repeat monitoring of our plots in future decades will allow quantification of any extinction debt that may now be in place due to the increased presence of nonnative species, especially invasive shrubs escaped from landscaping.

Bumble Bee Fauna of Palouse Prairie: Survey of Native Bee Pollinators in a Fragmented Ecosystem

Bumble bees, Bombus Latreille (Hymenoptera: Apidae:), are dominant pollinators in the northern hemisphere, providing important pollination services for commercial crops and innumerable wild plants. Nationwide declines in several bumble bee species and habitat losses in multiple ecosystems have raised concerns about conservation of this important group. In many regions, such as the Palouse Prairie, relatively little is known about bumble bee communities, despite their critical ecosystem functions. Pitfall trap surveys for ground beetles in Palouse prairie remnants conducted in 2002–2003 contained considerable by-catch of bumble bees. The effects of landscape context, remnant features, year, and season on bumble bee community composition were examined. Additionally, bees captured in 2002–2003 were compared with historic records for the region to assess changes in the presence of individual species. Ten species of bumble bee were captured, representing the majority of the species historically known from the region. Few detectable differences in bumble bee abundances were found among remnants. Community composition differed appreciably, however, based on season, landscape context, and elevation, resulting in different bee assemblages between western, low-lying remnants and eastern, higherelevation remnants. The results suggest that conservation of the still species-rich bumble bee fauna should take into account variability among prairie remnants, and further work is required to adequately explain bumble bee habitat associations on the Palouse.

Direct measurement of roots in soil for single and mixed species using a quantitative DNA-based method

Molecular techniques present a new opportunity to study roots and their interactions in soil. Extraction and quantification of species-specific DNA directly from soil allows direct identification of roots in mixed swards reducing the need for labour-intensive methods to recover and identify individual roots. DNA was extracted directly from up to 0.5 kg of soil and the presence of individual species quantified using species-specific probes with quantitative real-time PCR. A range of plant and soil factors influenced the DNA content measured in roots and it was necessary to account for these influences when converting DNA amount to root mass. The utility of the method for quantitative root studies was demonstrated in an experiment to investigate the effect of lime on root growth of acid-soil resistant and sensitive perennial grasses grown together in an aluminium-toxic soil. The root mass of an acid-soil resistant species was unaffected by lime application, whereas that of an acid-soil sensitive species was restricted by soil acidity. Molecular techniques present a promising tool for quantification of root mass directly in soil and have applications for field studies involving mixed species of plants.

Once-yearly sampling for the detection of trends in biodiversity: The case of Willow Slough, California

The butterfly fauna at Willow Slough, Yolo County, California has been censused for 32 years as part of a participatory citizen-science project, the Fourth of July Butterfly Count. While the utility of a once-a-year census as a monitoring tool is potentially compromised by lack of standardization in counting protocols and variation in observer skill, at Willow Slough these issues have been minimized. We examined the Willow Slough count data for trends in both faunal diversity and the probability of presence of individual species. During the study, the number of species observed at a visit declined by 39%. Regressions of per-visit species counts against time did not detect a statistically significant decline until year 24. In contrast, Fisher’s α, a statistic designed to reduce sample-size bias, detected the decline as early as year 13. Twelve of the 24 species analyzed showed significant declines in probability of occurrence; a further nine exhibited negative but non-significant trends. Butterflies that overwinter as eggs or larvae were more likely to decline than those that overwinter as pupae or adults. Many species in decline at Willow Slough have also been observed less frequently at nearby sites which are monitored year-round, supporting the value of once-a-year monitoring. Although correlations with climatic data have been identified, they are too weak to account for the observed faunal decline. We suspect broader patterns of land use and habitat continuity are implicated in butterfly declines across the region. We conclude that once-a-year sampling, if properly and rigorously done, is in fact useful as a monitoring tool for butterfly faunas, and that Fisher’s α is well suited to early detection of trends in repeated diversity sampling.

Subtle perturbations of genital microflora alter mucosal immunity among low-risk pregnant women

Alteration in the vaginal flora has been associated with adverse pregnancy outcomes. The objective of this study was to examine the impact of changes in individual microflora on genital immunity among low-risk pregnant women in early pregnancy. Cross-sectional study. Large, tertiary care, academic hospital clinic. Low-risk women were enrolled prior to 14 weeks' gestation. Women were included if they had no medical or previous obstetrical complications, were non-smokers, had no sexually transmitted infections and no intercourse in the last 48 hours. Consenting women underwent speculum examination for collection of vaginal culture and Dacron swabs for cytokine analysis. Semi-quantitative vaginal cultures were performed in a reference laboratory. Concentrations of immune mediators were compared in the presence of various organisms. Concentrations were converted to multiples of the median to standardize the values of each mediator. Regression analyses were performed to control for race. We enrolled 47 women. The frequencies of genital microorganisms were: H(2)O(2) -producing lactobacilli (70%), Ureaplasma urealyticum (66%), Gardnerella vaginalis (45%), anaerobic non-pigmented Gram-negative rods (ANPGNR, 40%), anaerobic pigmented Gram-negative rods (APGNR, 17%). After adjusting for race and body mass index, interleukin-1β, interferon-γ, tumor necrosis factor-α and granulocyte macrophage-colony stimulating factor were increased in the presence of G. vaginalis, ANPGNR, and APGNR. There was no consistent impact on the other markers of immune activation. The presence of individual species impacts genital immunity among low-risk pregnant women. Perturbations in genital immunity could partially explain heterogeneity in adverse pregnancy outcomes.

Conserving butterflies in fragmented plantation forests: are edge and interior habitats equally important?

Edge effects are increasing in forest-dominated landscapes worldwide, due to increased fragmentation by other land uses. Understanding how species respond to edges is therefore critical to define adequate conservation measures. We compared the relative importance of interior and edge habitats for butterflies in a landscape composed of even-aged pine plantations interspersed with semi-natural habitats. Butterfly assemblages were surveyed simultaneously at the edge and the interior of 68 patches belonging to four main habitat types: herbaceous firebreaks, clearcuts and young pine stands, older pine stands, and deciduous woodlands. Butterfly species richness was higher at edges than in interior habitats, especially for pine stands. Assemblage composition differed significantly between edge and interior habitats, except for firebreaks. Of the 23 most abundant butterfly species, seven were significantly more abundant in one or all edge habitat types, five in interior habitats, and 11 species showed no edge-interior preference. Modelling the presence of individual species in edge habitats revealed the importance of habitat variables such as the abundance of nectar and host-plants, but also of the abundance of the same species in the adjacent interior habitat. Moreover, our results suggest that most species use several, different habitat types to find supplementary or complementary resources, including micro-climatic refuges to escape hot temperatures during summer. The use of adjacent edge and interior habitats by butterflies is probably a key process in such mosaic landscapes and underlines the importance of landscape heterogeneity for butterfly conservation.