The present study was carried out to identify single nucleotide variations in Pituitary specific Transcription factor – 1 (POU1F1) gene and evaluate their association with body weight at different stages of growth before the onset of puberty in meat-type Attappady Black goats. A total of 100 Attappady goats were screened for polymorphism using PCR-SSCP. Representative samples of each SSCP pattern were sequenced to ascertain the genotypes. Four fragments of POU1F1, 170 bp (exon 1), 234 bp (exon 3), 200 bp (exon 4) and 232 bp (exon 6) were analyzed. The 170 bp and 200 bp fragments were found to be monomorphic. The 234 bp fragment showed two diplotypes (GG and GA) with one synonymous single nucleotide polymorphism (g 0.42 C > T) in exon 3. The GA heterozygotes had significantly higher (p ≤ 0.05) body weight than GG homozygotes. at six months of age. The 232 bp fragment showed two diplotypes (CC and TC) with one novel synonymous single nucleotide polymorphism (g 0.180 C > T) in exon 6. The TC variants had significantly higher (p ≤ 0.05) body weight at six and nine months of age compared to the CC variants. The POU1F1 polymorphisms in the present study significantly contributed to variation in body weights at the onset of puberty at six and nine months of age indicating the role of POU1F1-mediated transcriptional regulation of genes coding for the various hormones of the neuro-endocrine system influencing growth and sexual maturity. The study suggests the possibility of using POU1F1 polymorphisms as markers for the selection of goats for higher pre-pubertal body weights in the genetic improvement programmes.
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