Preferential Association Research Articles

PON1 and PON3 in Alzheimer's Disease: Similar Functions but Different Roles.

Paraoxonase 1 (PON1) and Paraoxonase 3 (PON3) are enzymes located on the surface of high-density lipoprotein (HDL) and share similar antioxidant properties, possibly modulated by other proteins such as Myeloperoxidase (MPO), which drives the shift from functional to dysfunctional HDL. PON1 has been extensively studied in relation to Alzheimer's Disease (AD), but the role of PON3 remains unknown. To fill this knowledge gap, the study analyzed PON3 protein levels and PON1-arylesterase activity in 99 AD patients, 100 patients with mild cognitive impairment (MCI), and 79 cognitively normal controls. The results showed that serum PON3 levels remained unchanged across all groups. In contrast, serum arylesterase activity was significantly reduced in both AD and MCI patients compared to controls (p < 0.001 for both comparisons). Surprisingly, there was no correlation between arylesterase activity and MPO protein concentration or activity. However, PON3 was found to have a significant positive correlation with both MPO concentration (r = 0.507, p < 0.0001) and MPO activity (r = 0.264, p < 0.01). In conclusion, we demonstrated for the first time that PON1 and PON3 have distinct relationships with AD, with only PON1 showing a decrease in activity in this disease, while PON3 levels remained unchanged. Another noteworthy finding was the selective correlation between PON3 and MPO, which may suggest a preferential physical association of PON3 with dysfunctional HDL.

Long-term co-occurrence and gregariousness in the migratory common stingray using network analysis

Aggregations and social interactions play an important role in the movement ecology of many animals, including elasmobranchs. Several of these species have shown the capability of carrying out complex social behaviours, and the importance of sociality in this taxon is being realized. Although it is a growing field of study in the case of these organisms, these processes still need to be better understood, especially to support management and conservation policies. In this study, a long-term acoustic telemetry data set collected on Dasyatis pastinaca in a coastal marine protected area was analysed. A co-occurrence network analysis was done to investigate preferential associations among individuals, revealing non-random associations among them. The analysis revealed a few strong and consistent associations that were maintained across inter-migratory periods, as this species performs seasonal migrations to a nearby estuary, suggesting temporal stability of the observed associations. Moreover, individuals had similar average positions and a generally high overlap of space use in both periods, indicating some level of site fidelity to the fully protected area. Groups of up to 64% of tagged individuals were co-detected at a same receiver, particularly in the western side of the array. Despite our limited sample size, likely underestimating associations, these results show that in addition to their large-scale movement pattern, D. pastinaca is likely to also present active partner preference and spatial structure at a finer spatial scale. The nature of such results is relevant to support the protection of these species.

The effect of preferential associations on the reproductive performance of group-housed sows

The investigation of social bonds as a measure to improve reproduction in farmed species is an underrepresented research area. This study investigated the effects of preferential associations between group housed sows (average herd size, n = 59) on stillborn and crushed piglet numbers. Preferential associations were described as resting within < 1 m of a conspecific in which the proximity was tolerated > 60 s. The study occurred over 63 consecutive days, broken down into three 21-day periods referred to as cycles. The 21-day cycles represent the time between reintegrating events. Seven days per cycle were selected for observations providing 63 h of footage covering the functional areas of the barn. Production data were taken from one farrowing that occurred after a sow had been transferred from the barn to the farrowing house during the study period. For group-level analysis, the sows were categorised as socially prominent or non-socially prominent. Social prominence is defined as an individual that engages in significantly higher levels of interactions than their sub-group conspecifics. The subgroups were determined by our previous work that identified assortment by social connectivity within the same study herd. Each subgroup was defined as a k-core, in which the k-value represents the level of connectivity of those in the group (i.e., subgroup K1 means sows are connecting with at least one other conspecific). For individual-level analysis, sows were categorised as a sow with stillborn (at least one stillborn piglet) or a sow without stillborn (no stillborn piglets) and as a crushing sow (at least one crushed piglet) or a non-crushing sow (no crushed piglets). Degree centrality was applied to determine the number of interactions that individuals initiated and received. Results showed no overall effects of social prominence on live-born piglets (p = 0.436). Socially prominent sows demonstrated a lower mean rate of stillborn than non-socially prominent sows. Sows with stillborn had significantly lower degree centrality than sows without stillborn (p < 0.05). The numbers of crushed piglets between socially prominent and non-socially prominent sows were variable with crushing sows demonstrating significantly higher degree centrality than non-crushing sows (p < 0.05). Overall, the evidence does not provide a clear relationship between social prominence during gestation and the reproductive outputs of sows. Therefore, further work is required to validate the effects of social position in affiliative networks on the production indices of farmed pigs.

Single umbilical artery and associated birth defects in perinatal autopsies: prenatal diagnosis and management.

The umbilical cord forms the connection between the fetus and the placenta at the feto-maternal interface and normally comprises two umbilical arteries and one umbilical vein. In some cases, only a single umbilical artery (SUA) is present. This study was conducted to evaluate associations between SUA and other congenital malformations discovered in perinatal autopsies and to ascertain the existence of preferential associations between SUA and certain anomalies. We evaluated records of all fetuses sent for autopsy to the Department of Pathology during the 10-year period from 2013 through 2022 (n = 1,277). The data were obtained from the hospital's pathology laboratory records. The congenital anomalies were grouped by organ or system for analysis and included cardiovascular, urinary tract, nervous system, gastrointestinal tract, musculoskeletal, and lung anomalies. A SUA was present in 8.61% of the autopsies. The gestational age of the affected fetuses ranged between 13 to 40 weeks. An SUA presented as an isolated single anomaly in 44 cases (3.4%). Of the 110 SUA cases, 60% had other congenital anomalies. There was a significant association between birth defects and SUAs (p < .001). Strong associations between SUA and urinary tract, lung, and musculoskeletal anomalies were observed. A SUA is usually seen in association with other congenital malformations rather than as an isolated defect. Therefore, examination for associated anomalies when an SUA is detected either antenatally or postnatally is imperative. The findings of this study should be helpful in counseling expectant mothers and their families in cases of SUA.

Targeting pericentric non-consecutive motifs for heterochromatin initiation.

Pericentric heterochromatin is a critical component of chromosomes marked by histone H3 K9 (H3K9) methylation1-3. However, what recruits H3K9-specific histone methyltransferases to pericentric regions in vertebrates remains unclear4, as does why pericentric regions in different species share the same H3K9 methylation mark despite lacking highly conserved DNA sequences2,5. Here we show that zinc-finger proteins ZNF512 and ZNF512B specifically localize at pericentric regions through direct DNA binding. Notably, both ZNF512 and ZNF512B are sufficient to initiate de novo heterochromatin formation at ectopically targeted repetitive regions and pericentric regions, as they directly recruit SUV39H1 and SUV39H2 (SUV39H) to catalyse H3K9 methylation. SUV39H2 makes a greater contribution to H3K9 trimethylation, whereas SUV39H1 seems to contribute more to silencing, probably owing to its preferential association with HP1 proteins. ZNF512 and ZNF512B from different species can specifically target pericentric regions of other vertebrates, because the atypical long linker residues between the zinc-fingers of ZNF512 and ZNF512B offer flexibility in recognition of non-consecutively organized three-nucleotide triplets targeted by each zinc-finger. This study addresses two long-standing questions: how constitutive heterochromatin is initiated and how seemingly variable pericentric sequences are targeted by the same set of conserved machinery in vertebrates.

Slipping through the cracks: Challenges and prospects for investigating fungal plant disease complexes

Plant pathogens frequently do not operate alone when causing diseases. Since the infection process is affected by the interaction between members of the parasite community, this question asks about the efficiency of disease control strategies which are usually tailored to manage only one microbial pathogen at a time. Fungi and oomycetes are among plant disease's most prevalent and damaging causal agents. With the increasing ability to distinguish individual species, thanks to new high-throughput molecular tools, numerous diseases once attributed to a single species are now recognized as being caused by complexes of fungal phytopathogens. How should we approach the study of these complexes? What tools and methodologies are needed to characterize them and decipher their functional interactions? How can we understand and master the drivers of these coinfections and their dynamics under field conditions? Here, we review the current literature on fungal disease complexes to define their commonalities and address some of the current challenges regarding the identification of preferential associations among fungal species indicative of a disease complex and its community dynamics and regulation. This review highlights that fungal species complexes are highly dynamic at geographic and temporal scales and that human actions contributed to the dissemination of new members of species complexes worldwide and to disequilibrium within species complexes, often resulting in more damaging diseases. This review also points to the generally insufficient (or lacking) knowledge of the diversity, dynamics, and functioning of fungal disease complexes, and the risks linked with inappropriate management strategies focusing on only one dominant member of the complex.

Aggression and disagreement in public communication

Abstract The persuasive effectiveness of implicit strategies, associated with reduced epistemic vigilance, may lead to their exploitation in conveying doubtful information in advertisement and propaganda. In political communication, presuppositions tend to specialize for the conveyance of questionable opinions and self-praise, while implicatures reveal a preferential association with face-threatening contents in general, where implicitness can allow speakers to count less evidently as offenders, at the same time being able to convey contents that can discredit the opponent. In public debates, speakers do not necessarily aim at convincing the opponent, but at shaping the beliefs of the public at home. In Italian broadcast political debates, implicatures and presuppositions are used exactly with this function. Confirming this pattern, participants in public debates often “intercept” the opponent’s implicatures and make them explicit in order to reduce the persuasiveness effected by their being implicit. Sometimes this also offers the opportunity to provide explicitations that are different from the original implicature, caricaturizing the position of the opponent with a strawman effect.

Heart failure subtype after acute kidney injury

IntroductionAcute kidney injury (AKI) is associated with increased risk of heart failure (HF). Determining the type of HF experienced by AKI survivors (heart failure with preserved or reduced ejection fraction, HFpEF or HFrEF) could suggest potential mechanisms underlying the association and opportunities for improving post-AKI care.MethodsIn this retrospective study of adults within the Vanderbilt University health system with a diagnosis of HF, we tested whether AKI events in the two years preceding incident HF associated more with HFpEF or HFrEF while controlling for known predictors. HF outcomes were defined by administrative codes and classified as HFpEF or HFrEF by echocardiogram data. We used multivariable logistic regression models to estimate the effects of AKI on the odds of incident HFpEF versus HFrEF.ResultsAKI (all stages) trended towards a preferential association with HFpEF in adjusted analyses (adjusted OR 0.80, 95% CI 0.63 – 1.01). Stage 1 AKI was associated with higher odds of HFpEF that was statistically significant (adjusted OR 0.62, 95% CI 0.43 – 0.88), whereas stages 2–3 AKI showed a trend toward HFrEF that did not reach statistical significance (adjusted OR 1.11, 95% CI 0.76 – 1.63).ConclusionsAKI as a binary outcome trended towards a preferential association with HFpEF. Stage 1 AKI was associated with higher odds of HFpEF, whereas stage 2–3 trended towards an association with HFrEF that did not meet statistical significance. Different mechanisms may predominate in incident HF following mild versus more severe AKI. Close follow-up with particular attention to volume status and cardiac function after discharge is warranted after even mild AKI.

Defining the role of Sabellaria alveolata reefs as nursery areas for juvenile fish: first evidence from drone-based imagery and underwater visual census data

The biogenic reefs built by the honeycomb worm Sabellaria alveolata constitute priority habitats along Atlanto-Mediterranean coastal areas. Despite their wide extent and important ecological role, the nursery value of S. alveolata reefs remains unclear, and more information is needed to define how such structured habitats affect juvenile fish assemblages. In this study, habitat use by juveniles of 7 fish species was investigated by underwater visual census (UVC) at 3 study sites representing a gradient of complexity of Sabellaria reef habitats, spanning from a large and uniform reef to patchy and isolated small reef formations. Sabellaria reef metrics derived by drone-based cartography and GIS analysis were used to quantitatively monitor the seasonal structural changes occurring due to the natural dynamics of the reefs. We also tested the potential effect of Sabellaria habitats on the growth and relative condition factor (Kn) of white seabream Diplodus sargus juveniles. Five of the 7 surveyed species, especially sparid fishes, showed a clear preferential association with Sabellaria formations. Generalized additive modelling revealed a significant effect of the compactness ratio on estimated fish densities at high and low index values. The juvenile fish sampled on Sabellaria reefs exhibited higher values of Kn than those sampled on rocky habitats, supporting the hypothesis that structural complexity positively affected their condition. We provide evidence on habitat use by juveniles, suggesting that the presence of the Sabellaria reef may act as a nursery and affect local fish density in Mediterranean coastal waters.

Preferential association of PBDEs and PAHs with mineral particles vs. dissolved organic carbon: Implications for groundwater contamination at e-waste sites

Polybrominated biphenyl ethers (PBDEs) and polycyclic aromatic hydrocarbons (PAHs) are commonly detected contaminants at e-waste recycling sites. Against the conventional wisdom that PBDEs and PAHs are highly immobile and persist primarily in shallow surface soils, increasing evidence shows that these compounds can leach into the groundwater. Herein, we compare the leachabilities of PBDEs vs. PAHs from contaminated soils collected at an e-waste recycling site in Tianjin, China. Considerable amounts of BDE-209 (0.3–2 ng/L) and phenanthrene (42–106 ng/L), the most abundant PBDE and PAH at the site, are detected in the effluents of columns packed with contaminated soils, with the specific concentrations varying with hydrodynamic and solution chemistry conditions. Interestingly, the leaching potential of BDE-209 appears to be closely related to the release of colloidal mineral particles, whereas the leachability of phenanthrene correlates well with the concentration of dissolved organic carbon in the effluent, but showing essentially no correlation with the concentration of mineral particles. The surprisingly different trends of the leachability observed between BDE-209 and phenanthrene is counterintuitive, as PBDEs and PAHs often co-exist at e-waste recycling sites (particularly at the sites wherein incineration is being practiced) and share many similarities in terms of physicochemical properties. One possible explanation is that due to its extremely low solubility, BDE-209 predominantly exists in free-phase (i.e., as solid (nano)particles), whereas the more soluble phenanthrene is mainly sorbed to soil organic matter. Findings in this study underscore the need to better understand the mobility of highly hydrophobic organic contaminants at contaminated sites for improved risk management.

Evidence for individual vocal recognition in a pair-bonding poison frog, Ranitomeya imitator.

Individually distinctive vocalizations are widespread in nature, although the ability of receivers to discriminate these signals has only been explored through limited taxonomic and social lenses. Here, we asked whether anuran advertisement calls, typically studied for their role in territory defense and mate attraction, facilitate recognition and preferential association with partners in a pair-bonding poison frog (Ranitomeya imitator). Combining no- and two-stimulus choice playback experiments, we evaluated behavioral responses of females to male acoustic stimuli. Virgin females oriented to and approached speakers broadcasting male calls independent of caller identity, implying that females are generally attracted to male acoustic stimuli outside the context of a pair bond. When pair-bonded females were presented with calls of a mate and a stranger, they showed significant preference for calls of their mate. Moreover, behavioral responses varied with breeding status: females with eggs were faster to approach stimuli than females that were pair bonded but did not currently have eggs. Our study suggests a potential role for individual vocal recognition in the formation and maintenance of pair bonds in a poison frog and raises new questions about how acoustic signals are perceived in the context of monogamy and biparental care.

The UBP5 histone H2A deubiquitinase counteracts PRCs-mediated repression to regulate Arabidopsis development

Polycomb Repressive Complexes (PRCs) control gene expression through the incorporation of H2Aub and H3K27me3. In recent years, there is increasing evidence of the complexity of PRCs’ interaction networks and the interplay of these interactors with PRCs in epigenome reshaping, which is fundamental to understand gene regulatory mechanisms. Here, we identified UBIQUITIN SPECIFIC PROTEASE 5 (UBP5) as a chromatin player able to counteract the deposition of the two PRCs’ epigenetic hallmarks in Arabidopsis thaliana. We demonstrated that UBP5 is a plant developmental regulator based on functional analyses of ubp5-CRISPR Cas9 mutant plants. UBP5 promotes H2A monoubiquitination erasure, leading to transcriptional de-repression. Furthermore, preferential association of UBP5 at PRC2 recruiting motifs and local H3K27me3 gaining in ubp5 mutant plants suggest the existence of functional interplays between UBP5 and PRC2 in regulating epigenome dynamics. In summary, acting as an antagonist of the pivotal epigenetic repressive marks H2Aub and H3K27me3, UBP5 provides novel insights to disentangle the complex regulation of PRCs’ activities.

Self-assembled and perfusable microvasculature-on-chip for modeling leukocyte trafficking.

Leukocyte recruitment from blood to tissue is a process that occurs at the level of capillary vessels during both physiological and pathological conditions. This process is also relevant for evaluating novel adoptive cell therapies, in which the trafficking of therapeutic cells such as chimeric antigen receptor (CAR)-T cells throughout the capillaries of solid tumors is important. Local variations in blood flow, mural cell concentration, and tissue stiffness contribute to the regulation of capillary vascular permeability and leukocyte trafficking throughout the capillary microvasculature. We developed a platform to mimic a biologically functional human arteriole-venule microcirculation system consisting of pericytes (PCs) and arterial and venous primary endothelial cells (ECs) embedded within a hydrogel, which self-assembles into a perfusable, heterogeneous microvasculature. Our device shows a preferential association of PCs with arterial ECs that drives the flow-dependent formation of microvasculature networks. We show that PCs stimulate basement membrane matrix synthesis, which affects both vessel diameter and permeability in a manner correlating with the ratio of ECs to PCs. Moreover, we demonstrate that hydrogel concentration can affect capillary morphology but has no observed effect on vascular permeability. The biological function of our capillary network was demonstrated using an inflammation model, where significantly higher expression of cytokines, chemokines, and adhesion molecules was observed after tumor necrosis factor-alpha (TNF-α) treatment. Accordingly, T cell adherence and transendothelial migration were significantly increased in the immune-activated state. Taken together, our platform allows the generation of a perfusable microvasculature that recapitulates the structure and function of an in vivo capillary bed that can be used as a model for developing potential immunotherapies.

Antimicrobial resistance level and conjugation permissiveness shape plasmid distribution in clinical enterobacteria.

Conjugative plasmids play a key role in the dissemination of antimicrobial resistance (AMR) genes across bacterial pathogens. AMR plasmids are widespread in clinical settings, but their distribution is not random, and certain associations between plasmids and bacterial clones are particularly successful. For example, the globally spread carbapenem resistance plasmid pOXA-48 can use a wide range of enterobacterial species as hosts, but it is usually associated with a small number of specific Klebsiella pneumoniae clones. These successful associations represent an important threat for hospitalized patients. However, knowledge remains limited about the factors determining AMR plasmid distribution in clinically relevant bacteria. Here, we combined in vitro and in vivo experimental approaches to analyze pOXA-48-associated AMR levels and conjugation dynamics in a collection of wild-type enterobacterial strains isolated from hospitalized patients. Our results revealed significant variability in these traits across different bacterial hosts, with Klebsiella spp. strains showing higher pOXA-48-mediated AMR and conjugation frequencies than Escherichia coli strains. Using experimentally determined parameters, we developed a simple mathematical model to interrogate the contribution of AMR levels and conjugation permissiveness to plasmid distribution in bacterial communities. The simulations revealed that a small subset of clones, combining high AMR levels and conjugation permissiveness, play a critical role in stabilizing the plasmid in different polyclonal microbial communities. These results help to explain the preferential association of plasmid pOXA-48 with K. pneumoniae clones in clinical settings. More generally, our study reveals that species- and strain-specific variability in plasmid-associated phenotypes shape AMR evolution in clinically relevant bacterial communities.

Gut Bacteriomes and Ecological Niche Divergence: An Example of Two Cryptic Gastropod Species.

Symbiotic microorganisms may provide their hosts with abilities critical to their occupation of microhabitats. Gut (intestinal) bacterial communities aid animals to digest substrates that are either innutritious or toxic, as well as support their development and physiology. The role of microbial communities associated with sibling species in the hosts' adaptation remains largely unexplored. In this study, we examined the composition and plasticity of the bacteriomes in two sibling intertidal gastropod species, Littorina fabalis and L. obtusata, which are sympatric but differ in microhabitats. We applied 16S rRNA gene metabarcoding and shotgun sequencing to describe associated microbial communities and their spatial and temporal variation. A significant drop in the intestinal bacteriome diversity was revealed during the cold season, which may reflect temperature-related metabolic shifts and changes in snail behavior. Importantly, there were significant interspecies differences in the gut bacteriome composition in summer but not in autumn. The genera Vibrio, Aliivibrio, Moritella and Planktotalea were found to be predominantly associated with L. fabalis, while Granulosicoccus, Octadecabacter, Colwellia, Pseudomonas, Pseudoalteromonas and Maribacter were found to be mostly associated with L. obtusata. Based on these preferential associations, we analyzed the metabolic pathways' enrichment. We hypothesized that the L. obtusata gut bacteriome contributes to decomposing algae and detoxifying polyphenols produced by fucoids. Thus, differences in the sets of associated bacteria may equip their closely phylogenetically related hosts with a unique ability to occupy specific micro-niches.

How is polyadenylation restricted to 3'-untranslated regions?

Polyadenylation occurs at numerous sites within 3'-untranslated regions (3'-UTRs) but rarely within coding regions. How does Pol II travel through long coding regions without generating poly(A) sites, yet then permits promiscuous polyadenylation once it reaches the 3'-UTR? The cleavage/polyadenylation (CpA) machinery preferentially associates with 3'-UTRs, but it is unknown how its recruitment is restricted to 3'-UTRs during Pol II elongation. Unlike coding regions, 3'-UTRs have long AT-rich stretches of DNA that may be important for restricting polyadenylation to 3'-UTRs. Recognition of the 3'-UTR could occur at the DNA (AT-rich), RNA (AU-rich), or RNA:DNA hybrid (rU:dA- and/or rA:dT-rich) level. Based on the nucleic acid critical for 3'-UTR recognition, there are three classes of models, not mutually exclusive, for how the CpA machinery is selectively recruited to 3'-UTRs, thereby restricting where polyadenylation occurs: (1) RNA-based models suggest that the CpA complex directly (or indirectly through one or more intermediary proteins) binds long AU-rich stretches that are exposed after Pol II passes through these regions. (2) DNA-based models suggest that the AT-rich sequence affects nucleosome depletion or the elongating Pol II machinery, resulting in dissociation of some elongation factors and subsequent recruitment of the CpA machinery. (3) RNA:DNA hybrid models suggest that preferential destabilization of the Pol II elongation complex at rU:dA- and/or rA:dT-rich duplexes bridging the nucleotide addition and RNA exit sites permits preferential association of the CpA machinery with 3'-UTRs. Experiments to provide evidence for one or more of these models are suggested.

Unique CSF lipid signature in asymptomatic subjects with a parental history of Alzheimer’s disease and its association with key apolipoprotein species

AbstractBackgroundCSF apolipoproteins exhibit lipid‐specific relationships (signatures) with Alzheimer’s disease (AD) pathological markers and APOE‐ε4 in asymptomatic individuals.MethodMass spectrometry‐based CSF lipid analysis was performed as described before (Sampaio et al. 2011). Lipids were extracted using a one‐step chloroform/methanol procedure. After extraction, resulting samples were analyzed by direct infusion on a QExactive mass spectrometer equipped with a TriVersa NanoMate ion source. Both MS and MSMS data were combined to monitor CE, DAG and TAG ions as ammonium adducts; PC, PC O‐, as acetate adducts; and CL, PA, PE, PE O‐, PG and PI as deprotonated anions. CSF levels of amyloid beta (Aβ42), and total Tau (t‐Tau) were measured by enzyme‐linked immunosorbent assay (Fujirebio, Sweden) whereas apolipoproteins (AI, AII, B, CI, CII, CIII, D, E and J) concentrations were assessed using the Luminex/Biorad assays kit (10‐plex magneto‐fluorescent immunoassays, BioRad, USA).ResultsTo characterize human CSF lipid signatures and their relationship to several apolipoproteins in pre‐symptomatic AD, we profiled and analyzed 21 classes of lipid species (for a total of 796 sub‐species) and 10 apolipoproteins in 120 cognitively unaffected subjects exhibiting various levels of total tau, p(181)tau and Aβ42. Figure 1 illustrates the signature profile (after FDR correction) following stratification by APOE‐ε4 genotype at the time of recruitment, when no cognitive deficit was detected. Please note the preferential associations between phosphatidylethanolamine acetate species and apoB levels in the CSF in non‐ε4 carrier. The apoD‐lipid signature profile was found to be very different in ε4 versus non‐ε4 carriers. Figure 2 illustrates the different associations between lipid species and the different apolipoproteins found in the CSF as a function of AD severity (stratified using the CSF T‐Tau/Aβ42 ratio). As ratio increases (top tertile) and pathology unfolds, the lipid signatures become markedly altered, with strong effects observed with apoB, apoD and apoJ interactions.ConclusionOur results suggest that early amyloid and tau pathologies modulate the release of specific lipid species in the CSF which alters their relationship with apolipoproteins in an APOE‐ε4‐dependent manner.

Schnurri-3 drives tumor growth and invasion in cancer cells expressing interleukin-13 receptor alpha 2

Interleukin 13 receptor alpha 2 (IL13Rα2) is a relevant therapeutic target in glioblastoma (GBM) and other tumors associated with tumor growth and invasion. In a previous study, we demonstrated that protein tyrosine phosphatase 1B (PTP1B) is a key mediator of the IL-13/IL13Rα2 signaling pathway. PTP1B regulates cancer cell invasion through Src activation. However, PTP1B/Src downstream signaling mechanisms that modulate the invasion process remain unclear. In the present research, we have characterized the PTP1B interactome and the PTP1B-associated phosphoproteome after IL-13 treatment, in different cellular contexts, using proteomic strategies. PTP1B was associated with proteins involved in signal transduction, vesicle transport, and with multiple proteins from the NF-κB signaling pathway, including Tenascin-C (TNC). PTP1B participated with NF-κB in TNC-mediated proliferation and invasion. Analysis of the phosphorylation patterns obtained after PTP1B activation with IL-13 showed increased phosphorylation of the transcription factor Schnurri-3 (SHN3), a reported competitor of NF-κB. SHN3 silencing caused a potent inhibition in cell invasion and proliferation, associated with a down-regulation of the Wnt/β-catenin pathway, an extensive decline of MMP9 expression and the subsequent inhibition of tumor growth and metastasis in mouse models. Regarding clinical value, high expression of SHN3 was associated with poor survival in GBM, showing a significant correlation with the classical and mesenchymal subtypes. In CRC, SHN3 expression showed a preferential association with the mesenchymal subtypes CMS4 and CRIS-B. Moreover, SHN3 expression strongly correlated with IL13Rα2 and MMP9-associated poor prognosis in different cancers. In conclusion, we have uncovered the participation of SNH3 in the IL-13/IL13Rα2/PTP1B pathway to promote tumor growth and invasion. These findings support a potential therapeutic value for SHN3.

Fluorescence based studies on the interaction and characterization of surface-active ionic liquids with polarity sensitive intramolecular charge transfer probe

Surface-active ionic liquids (SAILs) are of tremendous interest in recent times due to their improved application in the field of food, detergent, and health. The modulated fluorescence behavior of an intramolecular charge transfer (ICT) probe, trans‐ethyl‐p‐(dimethylamino) cinnamate (EDAC), in presence of five different SAILs with varying head groups (viz. imidazolium, pyridinium, and morpholinium) and different alkyl chain length (decyl, dodecyl, and tetradecyl) was monitored by steady state and time-resolved fluorescence spectroscopy. Extreme sensitivity of EDAC fluorescence was used to characterize different physicochemical properties of the SAILs, including critical micelle concentration, static polarity, and empirical solvent polarity scale, ET(30) of the microenvironment. The estimated parameters are in good agreement with the literature reports and measured independently from other complimentary experiments discussed here. Time‐resolved fluorescence experiments show a significant retardation in different nonradiative decay channels of EDAC, when compared to that in aqueous phase, indicating a preferential association of the probe in presence of SAILs. The results indicate that the physicochemical properties of SAILs can be tuned by controlling the nature of both the cations and as well as the chain length of the alkyl group. These properties also show significant modulation in solutions with varying SAIL concentration, particularly in the pre- and post-micellar region. The results, particularly the surface-active properties and the self-assembly behavior presented in this study, are expected to provide new knowledge towards the design and development of novel SAILs with specific industrial and biological applications.

BAG3 regulates the specificity of the recognition of specific MAPT species by NBR1 and SQSTM1

ABSTRACT Macroautophagy/autophagy receptors are essential for the recognition and clearance of specific cargos by selective autophagy, which is essential for maintaining MAPT proteostasis. Previous studies have implicated different autophagy receptors in directing distinct species of MAPT to autophagy, but the underlying mechanisms have not been fully investigated. Here we examine how the autophagy receptors NBR1 and SQSTM1 differentially associate with specific forms of MAPT. In primary neurons depletion of NBR1, unlike depletion of SQSTM1, significantly increased phosphorylated MAPT levels. The specificity of the interactions was confirmed using in vitro binding assays with purified proteins. We provide direct evidence that the co-chaperone BAG3 promotes the preferential association of NBR1 with monomeric MAPT and SQSTM1 with oligomeric MAPT. Using an in vitro affinity-isolation assay, we show that SQSTM1 only binds to monomeric MAPT when BAG3 is absent and fails to bind when BAG3 is present. The opposite is true of NBR1; its association with monomeric MAPT was dependent on the presence of BAG3. Interestingly, in Alzheimer disease brain the association of NBR1 with BAG3 was significantly decreased. In a mouse model, ablation of BAG3 in neural cells disrupted the association of NBR1 with phosphorylated MAPT and led to increased levels of phosphorylated and oligomeric MAPT. Overall, our results uncover a novel role for BAG3 in regulating the specificity of selective autophagy receptors in targeting different species of MAPT and provide compelling evidence that BAG3 plays a key role in maintaining MAPT proteostasis. Abbreviations: AD: Alzheimer disease; BAG3: BCL2-associated athanogene 3; BSA: bovine serum albumin; CERAD: Consortium to Establish a Registry for Alzheimer’s Disease; ESCRT: endosomal sorting complexes required for transport; GST: glutathione S-transferases; MAPT: microtubule-associated protein tau; NBR1: NBR1, autophagy cargo receptor; NFT: neurofibrillary tangles; PMI: postmortem interval; SQSTM1: sequestosome 1.