Alcohol consumption produces a variety of undesirable behavioural and physiological effects in animals and humans and can eventually lead to addiction. Converging evidences suggest that its molecular mechanisms of action involve specific protein targets. Among these, pentameric ligand-gated ion channels (pLGICs) and especially GABA-A Receptor have been shown to be one of the main targets of ethanol in the central nervous system. Here we report the first atomic-resolution structure at 2.8 A of ethanol bound to a member of the pLGIC family, the pH-gated prokaryotic homolog GLIC variant F14'A. This GLIC variant is potentiated by concentrations of ethanol similar to the ones effective in the vertebrate Glycine and GABA-A receptors (R. Howard et al., 2012). Comparison the ethanol-bound and apo structures of GLIC F14'A gives a rational and simple explanation to the potentiating effect of ethanol on these receptors by stabilizing the open form. Multiple-sequence alignments and homology structure models suggest that the ethanol binding-pocket identified in GLIC is also present in human Glycine and GABA-A receptors.
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