Potential Of Microorganisms Research Articles

Goethite introduction strengthens balck soil carbon sequestration under various water management conditions and its microbial mechanisms

Natural and anthropogenic disturbances lead to degradation of (soil organic carbon) SOC content black soil in northeast china. Goethite (α-FeO (OH)) as widely distributed mineral, has a sequestration effect on SOC. With the diversification of crop cultivation in northeast china, various water management are becoming important. However, SOC sequestration mechanism by goethite under varying water management conditions is still unclear. In our study, we set up 3 groups of experiments: 1) 60% water-holding capacity (60% WHC), 60% water-holding capacity with goethite (60% WHCG), 2), waterlogging (W), waterloggin with goethite (WG), 3) alternation of wetting and drying (AWD), alternation of wetting and drying with goethite (AWDG) to elucidate the sequestration mechanism of SOC by goethite under three water management conditions. Results shows introducing goethite can sequester SOC under three water management conditions, with WG SOC sequestration capacity more than AWDG and 60% WHCG. The main sequestration mechanism of SOC has two aspects, on the one hand, goethite introduction increased significantly SOC functional groups, Fe-bound OC, iron molar ratio and Fe-bound OC/SOC, made SOC was bound to goethite by adsorption and co-precipitation. On the other hand, goethite introduction increased the diversity and abundance of bacteria and fungi by affecting soil pH, iron morphology and valence, induced the enrichment of Bryobacter, Gemmatimonas, Conexibacter, Streptomyces, Gaiella, Rubrobacter and Talaromyces potential carbon sequestrating microorganisms, further contributing to SOC sequestration. This study offers a significant theoretical foundation for elucidating the SOC sequestration mechanism of northeastern black soil.

The mango bacterial black spot altered the endophyte community structure and diversity

Mango bacterial black spot is a major disease limiting mango production, which is now causing increasingly severe economic losses. In this study, we analyzed the differences in the composition and structure of bacterial and fungal communities in the pulp and leaves between the healthy mangoes of variety Kate and those affected by bacterial black spot, and attempted to explore potential biocontrol microorganisms for mangoes. The results showed there existed significant differences in microbial communities, the bacterial Stenotrophomonas, Curtobacterium, Massilia and fungous Penicillium, Alternaria, Aureobasidiu showed great abundance both in pulps and leaves. Some potential pathogenic bacteria, such as Pseudomonas, Xanthomonas, and Burkholderia, were also significantly enriched in the infected groups. In both the infected and healthy groups, the overall community structure of endophytic bacteria and fungi within the same organs was more similar, indicating that the composition of endophytes is organ-specific. After infection, the abundance of the potential probiotic bacterium class Paenibacillus was significantly increased both in leaves and pulp, suggesting that the pathogen invasion stimulated the defense systems of endophytes. Presumably, these Paenibacillus might be developed as defense bacteria for black spot as well as other plant diseases.

Microbial diversity across tea varieties and ecological niches: correlating tea polyphenol contents with stress resistance.

Microorganisms exhibit intricate interconnections with tea plants; however, despite the well-established role of microorganisms in crop growth and development, research on microbes within the tea plant remains insufficient, particularly regarding endophytic microorganisms. In this study, we collected samples of leaves and rhizosphere soils from 'Zhuyeqi', 'Baojing Huangjincha#1', 'Baiye#1', and 'Jinxuan' varieties planted. Our analyses revealed significant variations in tea polyphenol contents among tea varieties, particularly with the 'Zhuyeqi' variety exhibiting higher levels of tea polyphenols (>20% contents). Microbiome studies have revealed that endophytic microbial community in tea plants exhibited higher host specificity compared to rhizospheric microbial community. Analyses of across-ecological niches of the microbial community associated with tea plants revealed that soil bacteria serve as a significant reservoir for endophytic bacteria in tea plants, Bacillus may play a crucial role in shaping the bacterial community across-ecological niche within the tea plants with higher tea polyphenol levels. In the aforementioned analyses, the microbial community of 'Zhuyeqi' exhibited a higher degree of host specificity for leaf endophytic microorganisms, the topological structure of the co-occurrence network is also more intricate, harboring a greater number of potential core microorganisms within its nodes. A closer examination was conducted on the microbial community of 'Zhuyeqi', further analyses of its endophytic bacteria indicated that its endophytic microbial community harbored a greater abundance of biomarkers, particularly among bacteria, and the enriched Methylobacterium and Sphingomonas in 'Zhuyeqi' may play distinct roles in disease resistance and drought resilience in tea plants. In summary, this study has shed light on the intricate relationships of tea plant varieties with their associated microbial communities, unveiling the importance of microorganisms and tea varieties with higher tea polyphenols, and offering valuable insights to the study of microorganisms and tea plants.

Can Functional Micro-organisms Associated with Pumpkin Sizes Be Sought Out from the Soil?-A Comparison of Soil Microbial Community Structures in Rhizospheres between Giant- and Small-Sized Pumpkin Varieties.

To elucidate the biological mechanisms driving the growth of various pumpkin varieties to different sizes under identical management conditions while in the same field, the soil microbial community structures in the rhizospheres of giant-pumpkin (GP) and small-pumpkin (SP) varieties were analyzed. The results revealed that a significantly higher abundance of bacterial communities could be detected in the rhizospheres of the giant pumpkin varieties, such as Gemmatimonadota, norank__f__norank__o_Gaiellales, norank__f__Gemmatimonadaceae, Bryobacter, Sphingomonas, norank__f__JG30-KF-AS9, and norank__f__norank__o___Elsterales, than in those of the small-sized pumpkins. Additionally, norank_f__norank_o__Elsterale, Ellin6067, norank_f__67-14, and Chujaibacter were unique dominant soil bacteria genera in the rhizospheres of the giant pumpkins. By contrast, Arthrobacter, norank_f__Roseiflexaceae, unclassified_f__Rhizobiaceae, Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium, Nocardioides, Mycobacterium, norank_f__norank_o__Vicinamibacterales, and Burkholderia-Caballeronia-Paraburkholderia were the unique dominant soil bacterial genera in the rhizospheres of the small pumpkins. Moreover, at the fungal genus level, unclassified_c__Chytridiomycetes, Podosphaera, and Colletotrichum presented significant differences between the giant-pumpkin (GP) and small-pumpkin (SP) rhizospheres. In addition, unclassified__p__Rozellomycota, unclassified__c__Chytridiomycetes, Penicillium, and unclassified__f__Chaetomiaceae were unique dominant soil fungal genera in the rhizospheres of the giant pumpkins (GPs). By contrast, Podosphaera, Colletotrichum, unclassified__f__Plectosphaerellaceae, unclassified__o_Boletales, Scytalidium, unclassified__p__Rozellomycota, and unclassified__o_Agaricales were the unique dominant soil fungal genera in the rhizospheres of the small pumpkins (SPs). PICRUSt and FUNGuild functional prediction analyses revealed that the giant-pumpkin rhizosphere microbial community had significantly increased translation, ribosomal structure and biogenesis, nucleotide transport and metabolism, defense mechanisms, replication, recombination and repair, wood saprotroph, and undefined saprotroph levels. The above results suggest that the soil microbial compositions differed between the rhizospheres of the giant- (GP) and small-pumpkin (SP) varieties, even though the plants were grown in the same field under identical management conditions. Meanwhile, bacterial genera such as norank_f__norank_o__Elsterale, Ellin6067, norank_f__67-14, and Chujaibacter, in addition to fungal genera such as unclassified__p__Rozellomycota, unclassified__c__Chytridiomycetes, Penicillium, and unclassified__f__Chaetomiaceae, can be speculated as potential soil functional micro-organisms associated with improved pumpkin size.

The Probiotic Enterococcus Lactis SF68 as a Potential Food Fermentation Microorganism for Safe Food Production.

Due to the reports describing virulent and multidrug resistant enterococci, their use has become a topic of controversy despite most of them being safe and commonly used in traditionally fermented foods worldwide. We have characterized Enterococcus lactis SF68, a probiotic strain approved by the European Food Safety Authority (EFSA) for use in food and feed, and find that it has a remarkable potential in food fermentations. Genome analysis revealed the potential of SF68 to metabolize a multitude of carbohydrates, including lactose and sucrose, which was substantiated experimentally. Bacteriocin biosynthesis clusters were identified and SF68 was found to display a strong inhibitory effect against Listeria monocytogenes. Fermentation-wise, E. lactis SF68 was remarkably like Lactococcus lactis and displayed a clear mixed-acid shift on slowly fermented sugars. SF68 could produce the butter aroma compounds, acetoin and diacetyl, the production of which was enhanced under aerated conditions in a strain deficient in lactate dehydrogenase activity. Overall, E. lactis SF68 was found to be versatile, with a broad carbohydrate utilization capacity, a capacity for producing bacteriocins, and an ability to grow at elevated temperatures. This is key to eliminating pathogenic and spoilage microorganisms that are frequently associated with fermented foods.

Clubroot-Induced Changes in the Root and Rhizosphere Microbiome of Susceptible and Resistant Canola.

Clubroot is a soilborne disease of canola (Brassica napus) and other crucifers caused by the obligate parasite Plasmodiophora brassicae. In western Canada, clubroot is usually managed by planting-resistant cultivars, but the emergence of resistance-breaking pathotypes of P. brassicae represents a major threat to sustainable canola production. The rhizosphere and root contain beneficial microorganisms that can improve plant health. In this study, we evaluated the effect of two P. brassicae isolates (termed A and B) with different levels of virulence on the root and rhizosphere microbiomes of clubroot-resistant and clubroot-susceptible canola. Additionally, potential biocontrol microorganisms were identified based on taxa antagonistic to clubroot. Although both P. brassicae isolates were classified as pathotype 3A, isolate A caused a higher disease severity index in the resistant canola genotype compared with isolate B. Metabarcoding analysis indicated a shift in the bacterial and fungal communities in response to inoculation with either field isolate. Root endophytic bacterial and fungal communities responded to changes in inoculation, isolate type, sampling time, and canola genotype. In contrast, fungal communities associated with the rhizosphere exhibited significant differences between sampling times, while bacterial communities associated with the rhizosphere exhibited low variability.

Modeling and tracing of polycarbonate (PC) degradation in soil microcosm with a PC microplastics quantification method based on pyrolysis GC–MS

Understanding the migration and transformation of polycarbonate (PC) plastic wastes in the natural environment is crucial for assessing their environmental impact and bioremediation. In this study, PC plastic degradation was modeled and traced in soil microcosm by investigating physiochemical properties changes of PC, the formation of microplastics, and changes in soil microbial communities. Notably, PC microplastics quantification method was also successfully devised by pyrolysis gas chromatography mass spectrometry and also applied herein. Through gel permeation chromatography analysis, the molecular weight of the naturally aged PC film obviously reduced, whereas no change for unaged ones. After 12 months of soil burial, the surface corrosion and holes formation were emerged on the surfaces of both PC films in the non-sterilized soil harboring indigenous microorganisms by scanning electron microscope. The worsened thermal stability of both PC films in non-sterilized soil was demonstrated by thermogravimetric analysis. Meanwhile, the presence of increased hydroxyl group absorption and decreased carbonyl peak highlighted molecular chain breakage in both PC films by Fourier transform infrared spectroscopy. In particular, all the changes were more significant in aged PC than unaged ones. Furthermore, the increase of quantified PC microplastics on the surface of PC film in the non-sterilized soil accompanied the decreasing of microbial diversity and the enrichment of potential functional microorganisms. These findings revealed that the combination of natural aging and indigenous microbes exhibited a noticeable performance in PC plastics degradation in soil microcosm, providing new insights into the degradation mechanism of PC plastic wastes in the natural environment.

MOLECULAR APPROACH AND PRELIMINARY SCREENING OF CULTURABLE FREE-LIVING RHIZOBIUM AS PLANT GROWTH ENHANCER

The population increase and changes in consumption are the main challenges in agriculture production related to the increase in basic needs, especially food. The high demand for food leads to fertilizer application to effectively speed up and manage plant growth. The search for alternative biofertilizers from unique microorganisms is needed to tackle this issue. Rhizobium is known as a plant growth enhancer. In this study, they were isolated from Aek Natonang, famous as “the lake above the lake”, located on Samosir Island, North Sumatra, at more than 1400 m. These geographical conditions offer various potential unique microorganisms. The collected free-living Rhizobium from the sample was identified by morphological characteristics and molecular approach through 16S rDNA sequence. They were assessed for their abilities as plant growth promoters. Based on the morphological characterization, they showed a creamy yellow colony, excessive mucus production, Gram-staining negative, and catalase positive. Through the molecular approach, they have 98-100% similarity with Rhizobium sp.. A combination of morphological and molecular approaches strengthens the identification results. Six Rhizobium sp. produced IAA, siderophore, ACC Deaminase, and ammonia. They could also solubilize phosphate tolerated to high pH and salt concentrations. All the collected Rhizobium were qualitatively potential to enhance the plant growth. They performed diverse abilities in vitro, and Rhizobium radiobacter strain DT 14.16 displayed the best features. Hence, they can be a candidate for biofertilizer. However, none of the collected Rhizobium could suppress the growth of Ralstonia solanacearum. Using quality indigenous bacteria such as Rhizobium, is an environmentally friendly technology to increase agricultural productivity and hopefully provide better yield.

ISOLATION AND SCREENING OF MICROORGANISMS FOR CITRIC ACID PRODUCTION

Citric acid is a weak acid and naturally occurring antioxidant. Due to its wide application in the food industry, cosmetics and manufacturing cleaning products, Citric acid is artificially synthesized by exploiting microorganisms, especially fungi. With an aim of isolating and screening the potential microorganisms for citric acid production, the present study was carried out by collecting samples of decaying fruits and vegetables from the local market of Kalaburagi, Karnataka, India viz., Citrus limon, Citrus sinensis, Vitis vinifera, Malus pumila, Ananas comosus, Solanum tuberosum, Punica granatum, Citrullus lanatus, Musa paradisiaca, Solanum lycopersicum, Phaseolus vulgaris, Mangifera indica, Manilkara zapota, Beta vulgaris, Saccharum officinarum, Ipomoea batatas, Daucus carota, Psidium guajava, Solanum melongena and Abelmoschus esculentus. A total of 20 isolates have been isolated from the samples, out of 20 fungal isolates, 7 isolates viz., KLV03, KLV04, KLV07, KLV10, KLV11, KLV13 and KLV14 showed significant acid unitage values of 3.00, 1.88, 3.36, 1.31, 2.35, 1 and 1 respectively. Among these, KLV07 isolate showed the highest acid unitage value of 3.36.

Assessment of the presence of Vibrio cholera and detection of toxigenic Vibrio cholerae in river sources within the Vhembe District Municipality Limpopo province of South Africa

ABSTRACT Most rivers in South Africa, particularly in rural areas, are contaminated and serve as a breeding ground for potential disease-causing microorganisms such as Vibrio cholera. Contaminated river sources could endanger the health of those communities that rely on them for domestic, agricultural, and recreational purposes. The aim of the study was to examine the presence of V. cholera and toxigenic V. cholera water samples from river sources collected in the Vhembe Municipal District during a three-month period. Physicochemical parameters, culture dependent and molecular techniques were used to identify V. cholerae in the samples. Majority of the physiochemical parameters were within the acceptable limit with exception of electrical conductivity readings in the Mvudi, Livuvhu, Dzindi, Nzhelele, Mutale, Shingwedzi, Tshinane and Nwedi rivers which were above the acceptable standard limit of 0–70 μS/cm. Most of the river samples tested positive for the presence of V. cholera, particularly on the downstream samples. Toxigenic V. cholerae was detected in four of the 12 samples that originally tested positive for V. cholera. The study revealed poor water quality and significant health concerns to consumers, emphasizing the importance of implementing river basin management measures to ensure the long-term sustainability of these rivers.

Hydraulic conditions control the abundance of antibiotic resistance genes and their potential host microorganisms in a frequently regulated river–lake system

Antibiotic resistance genes (ARGs) are a growing problem that is widespread in river–lake ecosystems, where they pose a threat to the aquatic environment's health and public safety. These systems serve as critical nodes in water management, as they facilitate the equitable allocation of water resources through long-term and frequent water diversions. However, hydrological disturbances associated with water-regulation practices can influence the dynamics of their potential host microorganisms and associated resistance genes. Consequently, identifying the key ARGs and their resistance mechanisms in heavily regulated waters is vital for safeguarding human health and that of river–lake ecosystems. In this study, we examined the impact of water-regulation factors on ARGs and their hosts within a river–lake continuum using 16S rRNA and metagenomic sequencing. We found that a significant increase in ARG abundance during regulation periods (p < 0.05), especially in the aquatic environment. Key resistance genes were macB, tetA, evgS, novA, and msbA, with increased efflux pinpointed as their principal resistance mechanism. Network analysis identified Flavobacteriales, Acinetobacter, Pseudomonas, Burkholderiaceae, and Erythrobacter as key potential host microorganisms, which showed increased abundance within the water column during regulation periods (p < 0.05). Flow velocity and water depth both drove the host microorganisms and critical ARGs. Our findings underscore the importance of monitoring and mitigating the antibiotic resistance risk during water transfers in river–lake systems, thereby supporting informed management and conservation strategies.

Identification and characterization of microorganisms isolated from noncompliant or atypical dairy products in Canada

Despite good manufacturing practices and rigorous cleaning and sanitizing procedures established in dairy processing plants, microbiological contamination remains the main cause of products being non-compliant and/or atypical and hence not fit for human consumption. The objective of this study was to isolate, identify and characterize bacteria, yeasts and molds associated with substandard dairy products in Canada and to create a collection of reference isolates. In addition to conventional microbiological characterization, each isolate was tested for biofilm-forming ability and susceptibility to heat, antimicrobial agents, and common industrial disinfectants. Among the 105 microbial strains isolated from pasteurized milk, cream, and cheese samples, 24 bacterial isolates, belonging mainly to the genus Pseudomonas, were shown to be moderate or strong biofilm producers in 96-well plates and highly resistant to peracetic acid (100 ppm, 5 min contact time) and sodium hypochlorite (70 ppm, 5 min contact time). In addition, 56 bacterial isolates, including Acinetobacter baumannii, Enterobacter bugandensis, Klebsiella pneumoniae and Pseudomonas spp., were found resistant to ampicillin, fosfomycin and/or ceftriaxone, while 14 others, such as Bacillus spp. and Macrococcus spp., withstood a heat treatment equivalent to low-temperature long-time pasteurization (63°C for 30 min). This descriptive study provides new information on potential problematic microorganisms in dairies and will guide the development of novel control strategies intended to prevent and reduce microbiological contamination and the associated economic losses.

Exploring the mechanism of enterotoxicity mediated by the microbiome-butyrate-PPAR axis in podophyllotoxin through the toxicological evidence chain (TEC) concept

Podophyllotoxin (PPT) is a lignan derived from the roots and stems of the Podophyllum plant. However, its enterotoxicity restricts its clinical application. The underlying mechanisms by which PPT exerts its action remain largely elusive. This study aimed to evaluate the molecular mechanisms underlying PPT-induced enterotoxicity utilizing the concept of toxicological evidence chain. Changes in body weight, behavior, and histopathological and biochemical markers in rats were observed. Additionally, microbiome, metabolome, and transcriptome analyses were integrated to identify potential microorganisms, metabolic markers, and major pathways using a co-occurrence network. Our findings suggested that PPT induced pathological changes in rats, including weight loss, diarrhea, and inflammation accompanied by increased levels of IFN-γ, IL-5, IL-6, GRO/KC, and IL-12p70. The decrease in butyrate levels in the PPT group may be related to the enrichment of Firmicutes. The reduction of butyrate levels may impair the expression of PPARγ, subsequently promoting Escherichia-Shigella proliferation. Additionally, the suppression of PPARs pathway may result in the increased production of inflammatory factors, contributing to enterotoxicity. This study offers a novel understanding of the molecular mechanisms underlying PPT-induced enterotoxicity, making a significant contribution to developing strategies to mitigate PPT toxicity and prevent associated diseases.

Shelf-life extension of tomatoes (Solanumlycopersicum), okra (&lt;i&gt;Abelmoschus esculentus&lt;/i&gt;) and eggplant (&lt;i&gt;Solanum melongena&lt;/i&gt;) using edible coating

Post-harvest losses of fresh farm produce, especially fruits grown in Nigeria is high. This study was aimed at investigating the shelf-life extension of tomatoes, okra and eggplants stored at room temperature (29±2oC), using edible coating involving beeswax, lime and pectin. Five edible films were formulated, namely: Beeswax alone (W), pectin alone (P), beeswax and pectin (WP), beeswax and lime (WL), beeswax, lime and pectin (WLP). Uncoated fruits served as control. The proximate composition of the beeswax and the potential spoilage microorganisms of the selected fruits were determined using standard methods. The results of the proximate composition revealed the following values for carbohydrate (46.25%), lipid (38.50%), moisture (8.85%), protein (5.25%), fibre (1.02%) and ash (0.53%). The WP combination gave the best results, extending the shelf life of the tomatoes, okra and eggplants by more than 23, 21 and 11 days, respectively more than the uncoated fruits. The least effective edible coating was the WLP combination, extending the shelf life of the tomatoes, okra and eggplants by more than 7, 2 and 5 days, respectively compared with the uncoated fruits. The log10CFU/g microbial counts for bacterial and fungal isolates revealed the following ranges for tomato (3.50 to 5.89, 3.43 to 5.88), okra (3.47 to 5.86, 3.46 to 5.88) and eggplant (3.50 to 5.89, 3.49 to 5.90), respectively. The predominant bacteria and fungi were Escherichia coli (30.18%) and Aspergillus niger (23.76%), respectively. Overall, the formulations were all effective in reducing spoilage, thereby extending the shelf life of the fruits.

Chronic diarrhea secondary to intestinal spirochetosis, should we think about it?

Abstract Human intestinal spirochetosis (HIS) is defined as a colonization of the apical membrane of the colonic mucosa and the appendix by spirochetes. It is a very rare finding, being more common in some populations (individuals living in villages and peri-urban environments in developing countries, recent immigrants from developing countries, men who have sex with other men and HIV positive patients), but the spirochete rarely is investigated as human enteric potential microorganism. It is a slow-growing microorganism and has specialized growth requirements, which is why it is not detectable in human fecal samples using routine diagnostic methods. However, it has been histologically identified attached to the colon and rectum in patients with conditions such as chronic diarrhea, rectal bleeding, and/or nonspecific abdominal discomfort. In this article we present the case of a patient with chronic diarrhea secondary to intestinal spirochetosis, highlighting the importance of considering this etiology in the differential diagnosis.

Geospatial evaluation and bio-remediation of heavy metal-contaminated soils in arid zones

Introduction: Soil pollution directly impacts food quality and the lives of both humans and animals. The concentration of heavy metals in Egypt’s drain-side soils is rising, which is detrimental to the quality of the soil and crops. The key to reducing the detrimental effects on the ecosystem is having accurate maps of the spatial distribution of heavy metals and the subsequent use of environmentally sustainable remediation approaches. The objective of this work is to assess soil contamination utilizing spatial mapping of heavy metals, determine contamination levels using Principal Component Analysis (PCA), and calculate both the contamination severity and the potential for bioremediation in the soils surrounding the main drain of Bahr El-Baqar. Furthermore, evaluating the capacity of microorganisms (bacteria, fungi, and “Actinomycetes) to degrade heavy elements in the soil.Methodology: 146 soil sample locations were randomly selected near the Bahr El-Baqar drain to examine the degree of soil pollution Ordinary Kriging (OK), method was used to map and analyze the spatial distribution of soil contamination by seven heavy metals (Cr, Fe, Zn, Cd, Pb, As, and Ni). Modified contamination degree (mCd) and PCA were used to assess the research area’s soil pollution levels. The process involved isolating, identifying, and classifying the microorganisms present in the soil of the study area. The study findings showed that variography suggested the Stable model effectively matched pH, SOM, and Cd values. Furthermore, the exponential model proved suitable for predicting Fe, Pb and Ni, while the spherical model was appropriate for Ni, Cr, and Zn.Results: The study revealed three levels of contamination, with an extremely high degree (EHDC) affecting approximately 97.49% of the area. The EHDC exhibited average concentrations of heavy metals: 79.23 ± 17.81 for Cr, 20,014.08 ± 4545.91 for Fe, 201.31 ± 112.97 for Zn, 1.33 ± 1.37 for Cd, 40.96 ± 26.36 for Pb, 211.47 ± 13.96 for As, and 46.15 ± 9.72 for Ni. Isolation and identification of microorganisms showed a significant influence on the breakdown of both organic and inorganic pollutants in the environment. The study demonstrated exceptionally high removal efficiency for As and Cr, with a removal efficiency reached 100%, achieved by Rhizopus oryzae, Pseudomonas aeruginosa, and Bacillus thuringiensis.Conclusion: This study has designated management zones for soil contamination by mapping soil pollutants, geo-identified them, and found potential microorganisms that could significantly reduce soil pollution levels.

Continuous cropping system altered soil microbial communities and nutrient cycles.

Understanding the response of microbial communities and their potential functions is essential for sustainability of agroecosystems under long-term continuous cropping. However, limited research has focused on investigating the interaction between soil physicochemical factors and microbial community dynamics in agroecosystems under long-term continuous cropping. This study probed into the physicochemical properties, metabolites, and microbial diversity of tobacco rhizosphere soils cropped continuously for 0, 5, and 20 years. The relative abundance of bacterial genera associated with nutrient cycling (e.g., Sphingomonas) increased while potential plant pathogenic fungi and beneficial microorganisms showed synergistic increases with the duration of continuous cropping. Variations in soil pH, alkeline nitrogen (AN) content, and soil organic carbon (SOC) content drove the shifts in soil microbial composition. Metabolites such as palmitic acid, 3-hydroxypropionic acid, stearic acid, and hippuric acid may play a key role in soil acidification. Those results enhance our ability to predict shifts in soil microbial community structure associated with anthropogenic continuous cropping, which can have long-term implications for crop production.

Rhizospheric microbiota of suppressive soil protect plants against Fusarium solani infection.

Fusarium infection has caused huge economic losses in many crops. The study aimed to compare the microbial community of suppressive and conducive soils and relate to the reduction of Fusarium wilt. High-throughput sequencing and microbial network analysis were used to investigate the differences in the rhizosphere microbiota of the suppressive and conducive soils and to identify the beneficial keystone taxa. Plant pathogens were enriched in the conducive soil. Potential plant-beneficial microorganisms and antagonistic microorganisms were enriched in the suppressive soil. More positive interactions and keystone taxa existed in the suppressive soil network. Thirty-nine and 16 keystone taxa were identified in the suppressive and conducive soil networks, respectively. Sixteen fungal strains and 168 bacterial strains were isolated from suppressive soil, some of which exhibited plant growth-promotion traits. Thirty-nine bacterial strains and 10 fungal strains showed antagonistic activity against F. solani. Keystone taxa Bacillus and Trichoderma exhibited high antifungal activity. Lipopeptides produced by Bacillus sp. RB150 and chitinase from Trichoderma spp. inhibited the growth of F. solani. Microbial consortium I (Bacillus sp. RB150, Pseudomonas sp. RB70 and Trichoderma asperellum RF10) and II (Bacillus sp. RB196, Bacillus sp. RB150 and T. asperellum RF10) effectively controlled root rot disease, the spore number of F. solani was reduced by 94.2% and 83.3%. Rhizospheric microbiota of suppressive soil protects plants against F. solani infection. Antagonistic microorganisms in suppressive soil inhibit pathogen growth and infection. Microbial consortia consisted of keystone taxa well control root rot disease. These findings help control Fusarium wilt. © 2024 Society of Chemical Industry.

The comparative plastisphere microbial community profile at Kung Wiman beach unveils potential plastic-specific degrading microorganisms.

Plastic waste is a global environmental issue that impacts the well-being of humans, animals, plants, and microorganisms. Microplastic contamination has been previously reported at Kung Wiman Beach, located in Chanthaburi province along with the Eastern Gulf of Thailand. Our research aimed to study the microbial population of the sand and plastisphere and isolate microorganisms with potential plastic degradation activity. Plastic and sand samples were collected from Kung Wiman Beach for microbial isolation on agar plates. The plastic samples were identified by Fourier-transform infrared spectroscopy. Plastic degradation properties were evaluated by observing the halo zone on mineral salts medium (MSM) supplemented with emulsified plastics, including polystyrene (PS), polylactic acid (PLA), polyvinyl chloride (PVC), and bis (2-hydroxyethyl) terephthalate (BHET). Bacteria and fungi were identified by analyzing nucleotide sequence analysis of the 16S rRNA and internal transcribed spacer (ITS) regions, respectively. 16S and ITS microbiomes analysis was conducted on the total DNA extracted from each sample to assess the microbial communities. Of 16 plastic samples, five were identified as polypropylene (PP), four as polystyrene (PS), four as polyethylene terephthalate (PET), two as high-density polyethylene (HDPE), and one sample remained unidentified. Only 27 bacterial and 38 fungal isolates were found to have the ability to degrade PLA or BHET on MSM agar. However, none showed degradation capabilities for PS or PVC on MSM agar. Notably, Planococcus sp. PP5 showed the highest hydrolysis capacity of 1.64 ± 0.12. The 16S rRNA analysis revealed 13 bacterial genera, with seven showing plastic degradation abilities: Salipiger, Planococcus, Psychrobacter, Shewanella, Jonesia, Bacillus, and Kocuria. This study reports, for the first time of the BHET-degrading properties of the genera Planococcus and Jonesia. Additionally, The ITS analysis identified nine fungal genera, five of which demonstrated plastic degradation abilities: Aspergillus, Penicillium, Peacilomyces, Absidia, and Cochliobolus. Microbial community composition analysis and linear discriminant analysis effect size revealed certain dominant microbial groups in the plastic and sand samples that were absent under culture-dependent conditions. Furthermore, 16S and ITS amplicon microbiome analysis revealed microbial groups were significantly different in the plastic and sand samples collected. We reported on the microbial communities found on the plastisphere at Kung Wiman Beach and isolated and identified microbes with the capacity to degrade PLA and BHET.

Advances in microbial exoenzymes bioengineering for improvement of bioplastics degradation

Plastic pollution has become a major global concern, posing numerous challenges for the environment and wildlife. Most conventional ways of plastics degradation are inefficient and cause great damage to ecosystems. The development of biodegradable plastics offers a promising solution for waste management. These plastics are designed to break down under various conditions, opening up new possibilities to mitigate the negative impact of traditional plastics. Microbes, including bacteria and fungi, play a crucial role in the degradation of bioplastics by producing and secreting extracellular enzymes, such as cutinase, lipases, and proteases. However, these microbial enzymes are sensitive to extreme environmental conditions, such as temperature and acidity, affecting their functions and stability. To address these challenges, scientists have employed protein engineering and immobilization techniques to enhance enzyme stability and predict protein structures. Strategies such as improving enzyme and substrate interaction, increasing enzyme thermostability, reinforcing the bonding between the active site of the enzyme and substrate, and refining enzyme activity are being utilized to boost enzyme immobilization and functionality. Recently, bioengineering through gene cloning and expression in potential microorganisms, has revolutionized the biodegradation of bioplastics. This review aimed to discuss the most recent protein engineering strategies for modifying bioplastic-degrading enzymes in terms of stability and functionality, including enzyme thermostability enhancement, reinforcing the substrate binding to the enzyme active site, refining with other enzymes, and improvement of enzyme surface and substrate action. Additionally, discovered bioplastic-degrading exoenzymes by metagenomics techniques were emphasized.