This paper investigated the effect of ion chelator on water dependency of water transport and fixation in mortars with high volume of fly ash (FA) and blast furnace slag (BFS). Ion chelator (CA) as a new type of crystalline admixture could improve self-healing performance of cementitious materials by crack-healing and pore filling. The porosity of mortar was measured by vacuum saturation and pore size distribution of mortar was tested by low-field nuclear magnetic resonance (LF NMR). The water sorption of mortar was evaluated by water vapor adsorption desorption balance. The water transport of mortar with and without crack was tested by capillary water absorption. Based on the experimental results, the water distribution of capillary water absorption in mortar was calculated. Results showed that the pore structure of mortar was improved evidently by CA, and the pores (>1μm) and the total porosity in mortar containing 50 %BFS were significantly reduced. CA had no obvious effect on the water vapor diffusion coefficient of mortar, but has a significant impact on the liquid water diffusion coefficient, especially in pure cement and containing 50 % BFS mortar. The total capillary water absorption and capillary absorption coefficient of mortars were reduced by CA, especially in pure cement and containing 50 % BFS mortar. The addition of CA decreased the water penetration in mortar, the reduction rates of water penetration depth in experimental groups (with CA) at 360 min were 12.4 % (100 %OPC), 6.0 % (30 %FA), 21.3 % (50 %BFS) and 10.8 % (16 %FA 24 %BFS) compared to control group (no CA). After curing for 42d, the normalized water absorption coefficients S” of cracked M100CA and M50BFS50CA were 55.1 % and 72.0 %, respectively. Ion chelator significantly improved internal pore structure and crack healing ability of the mortar containing 50 %BFS, and then delayed the water diffusion.