The multilayer thick film (∼40 μm) of polyvinylidene fluoride-Ba0.8Sr0.2TiO3 (PVDF-BST) have been synthesized by a tape-casting technique. The incorporated BST nanoparticles in the PVDF matrix are functionalized by −PO4−3and −OH−group, which are abbreviated as PBST-P and PBST-H multilayer films. The nature of the functional group attached with the BST nanoparticles is found to strongly influence the dielectric properties, breakdown strength and energy storage behavior of the multilayer films. The dielectric constant (at 1 kHz) of PBST-P multilayer film shows a significant increase (∼30) as compared to PBST-H film (∼22), whereas the tangent loss remains the same. The breakdown strength of PBST-P multilayer film is also high (∼381 MV/m) as compared to the PBST-H film (∼318 MV/m). PBST-P film also possesses high discharge energy density (∼7.97 J/cc at 1800 kV) and ultrahigh energy efficiency (∼98 %). Enhanced dielectric and energy storage properties of PBST-P film is attributed to the strong bridging interaction between the PVDF matrix and BST-P nanofiller, which creates additional dipoles and a strong local electric field at the interfaces. The study may lead towards the novel ways of developing polymer-ceramic nanocomposites for high-energy density capacitors, where the incorporation of functionalized nanoparticles in the polymer matrix is accompanied by the architectured structure.