Pocillopora Meandrina Research Articles

Symbiodiniaceae diversity varies by host and environment across thermally distinct reefs.

Endosymbiotic dinoflagellates (Symbiodiniaceae) influence coral thermal tolerance at both local and regional scales. In isolation, the effects of host genetics, environment, and thermal disturbances on symbiont communities are well understood, yet their combined effects remain poorly resolved. Here, we investigate Symbiodiniaceae across 1300 km in Australia's Coral Sea Marine Park to disentangle these interactive effects. We identified Symbiodiniaceae to species-level resolution for three coral species (Acropora cf humilis, Pocillopora verrucosa, and Pocillopora meandrina) by sequencing two genetic markers of the symbiont (ITS2 and psbAncr), paired with genotype-by-sequencing of the coral host (DArT-seq). Our samples predominantly returned sequences from the genus Cladocopium, where Acropora cf humilis affiliated with C3k, Pocillopora verrucosa with C. pacificum, and Pocillopora meandrina with C. latusorum. Multivariate analyses revealed that Acropora symbionts were driven strongly by local environment and thermal disturbances. In contrast, Pocillopora symbiont communities were both partitioned 2.5-fold more by host genetic structure than by environmental structure. Among the two Pocillopora species, the effects of environment and host genetics explained four times more variation in symbionts for P. meandrina than P. verrucosa. The concurrent bleaching event in 2020 had variable impacts on symbiont communities, consistent with patterns in P. verrucosa and A. cf humilis, but not P. meandrina. Our findings demonstrate how symbiont macroscale community structure responses to environmental gradients depend on host species and their respective population structure. Integrating host, symbiont, and environmental data will help forecast the adaptive potential of corals and their symbionts amidst a rapidly changing environment.

Insights into zooxanthellae densities in corals Porites lutea and Pocillopora meandrina in Lakshadweep atolls

Zooxanthellae densities in two coral species were assessed in Lakshadweep reefs to learn how depth, seasons and temperature fluctuations influence their densities. The species, Porites lutea and Pocillopora meandrina were sampled at two stations at the outer slope (5 and 10 m depths) in two atolls (Kavaratti and Kadmat) from 2018 to 2022. The results showed significant variance in zooxanthellae densities between both coral species across different islands, depths, and seasons, with higher densities for Porites lutea (mean 5.42 x 105 cells per cm2) than Pocillopora meandrina (mean 4.87 x 105 cells per cm2). In both the species studied, the densities were higher at 5 m depth than at 10 m, with a 14% difference in densities in Pocillopora meandrina and a more substantial 20.56% difference in Porites lutea. In both the depths, the highest densities were observed in the post-monsoon of all the sampling years, from 4.44 to 13.66 x 105 cells per cm2 and from 5.25 to 10.46 x 105 cells per cm2, respectively, for Porites lutea and Pocillopora meandrina. The densities correlated significantly with the temperature and Photosynthetically Active Radiation (PAR) values at 5 m for both the species and the seasons sampled. These findings show variations in temperature and irradiance influencing zooxanthellae densities, emphasising the significance of this information in understanding bleaching resilience.

Antibiotics reduce Pocillopora coral-associated bacteria diversity, decrease holobiont oxygen consumption and activate immune gene expression.

Corals are important models for understanding invertebrate host-microbe interactions; however, to fully discern mechanisms involved in these relationships, experimental approaches for manipulating coral-bacteria associations are needed. Coral-associated bacteria affect holobiont health via nutrient cycling, metabolic exchanges and pathogen exclusion, yet it is not fully understood how bacterial community shifts affect holobiont health and physiology. In this study, a combination of antibiotics (ampicillin, streptomycin and ciprofloxacin) was used to disrupt the bacterial communities of 14 colonies of the reef framework-building corals Pocillopora meandrina and P. verrucosa, originally collected from Panama and hosting diverse algal symbionts (family Symbiodiniaceae). Symbiodiniaceae photochemical efficiencies and holobiont oxygen consumption (as proxies for coral health) were measured throughout a 5-day exposure. Antibiotics altered bacterial community composition and reduced alpha and beta diversity, however, several bacteria persisted, leading to the hypothesis that these bacteria are either antibiotics resistant or occupy internal niches that are shielded from antibiotics. While antibiotics did not affect Symbiodiniaceae photochemical efficiency, antibiotics-treated corals had lower oxygen consumption rates. RNAseq revealed that antibiotics increased expression of Pocillopora immunity and stress response genes at the expense of cellular maintenance and metabolism functions. Together, these results reveal that antibiotic disruption of corals' native bacteria negatively impacts holobiont health by decreasing oxygen consumption and activating host immunity without directly impairing Symbiodiniaceae photosynthesis, underscoring the critical role of coral-associated bacteria in holobiont health. They also provide a baseline for future experiments that manipulate Pocillopora corals' symbioses by first reducing the diversity and complexity of coral-associated bacteria.

High-quality genome assembles from key Hawaiian coral species.

Coral reefs house about 25% of marine biodiversity and are critical for the livelihood of many communities by providing food, tourism revenue, and protection from wave surge. These magnificent ecosystems are under existential threat from anthropogenic climate change. Whereas extensive ecological and physiological studies have addressed coral response to environmental stress, high-quality reference genome data are lacking for many of these species. The latter issue hinders efforts to understand the genetic basis of stress resistance and to design informed coral conservation strategies. We report genome assemblies from 4 key Hawaiian coral species, Montipora capitata, Pocillopora acuta, Pocillopora meandrina, and Porites compressa. These species, or members of these genera, are distributed worldwide and therefore of broad scientific and ecological importance. For M. capitata, an initial assembly was generated from short-read Illumina and long-read PacBio data, which was then scaffolded into 14 putative chromosomes using Omni-C sequencing. For P. acuta, P. meandrina, and P. compressa, high-quality assemblies were generated using short-read Illumina and long-read PacBio data. The P. acuta assembly is from a triploid individual, making it the first reference genome of a nondiploid coral animal. These assemblies are significant improvements over available data and provide invaluable resources for supporting multiomics studies into coral biology, not just in Hawai'i but also in other regions, where related species exist. The P. acuta assembly provides a platform for studying polyploidy in corals and its role in genome evolution and stress adaptation in these organisms.

Metabolomics Characterization of Scleractinia Corals with Different Life-History Strategies: A Case Study about Pocillopora meandrina and Seriatopora hystrix in the South China Sea.

Life-history strategies play a critical role in susceptibility to environmental stresses for Scleractinia coral. Metabolomics, which is capable of determining the metabolic responses of biological systems to genetic and environmental changes, is competent for the characterization of species' biological traits. In this study, two coral species (Pocillopora meandrina and Seriatopora hystrix in the South China Sea) with different life-history strategies ("competitive" and "weedy") were targeted, and untargeted mass spectrometry metabolomics combined with molecular networking was applied to characterize their differential metabolic pathways. The results show that lyso-platelet activating factors (lyso-PAFs), diacylglyceryl carboxyhydroxymethylcholine (DGCC), aromatic amino acids, and sulfhydryl compounds were more enriched in P. meandrina, whereas new phospholipids, dehydrated phosphoglycerol dihydroceramide (de-PG DHC), monoacylglycerol (MAG), fatty acids (FA) (C < 18), short peptides, and guanidine compounds were more enriched in S. hystrix. The metabolic pathways involved immune response, energy metabolism, cellular membrane structure regulation, oxidative stress system, secondary metabolite synthesis, etc. While the immune system (lysoPAF) and secondary metabolite synthesis (aromatic amino acids and sulfhydryl compounds) facilitates fast growth and resistance to environmental stressors of P. meandrina, the cell membrane structure (structural lipids), energy storage (storage lipids), oxidative stress system (short peptides), and secondary metabolite synthesis (guanidine compounds) are beneficial to the survival of S. hystrix in harsh conditions. This study contributes to the understanding of the potential molecular traits underlying life-history strategies of different coral species.

The effects of marine heatwaves on acute heat tolerance in corals.

Scleractinian coral populations are increasingly exposed to conditions above their upper thermal limits due to marine heatwaves, contributing to global declines of coral reef ecosystem health. However, historic mass bleaching events indicate there is considerable inter- and intra-specific variation in thermal tolerance whereby species, individual coral colonies and populations show differential susceptibility to exposure to elevated temperatures. Despite this, we lack a clear understanding of how heat tolerance varies across large contemporary and historical environmental gradients, or the selective pressures that underpin this variation. Here we conducted standardised acute heat stress experiments to identify variation in heat tolerance among species and isolated reefs spanning a large environmental gradient across the Coral Sea Marine Park. We quantified the photochemical yield (Fv /Fm ) of coral samples in three coral species, Acropora cf humilis, Pocillopora meandrina, and Pocillopora verrucosa, following exposure to four temperature treatments (local ambient temperatures, and + 3°C, +6°C and + 9°C above local maximum monthly mean). We quantified the temperature at which Fv /Fm decreased by 50% (termed ED50) and used derived values to directly compare acute heat tolerance across reefs and species. The ED50 for Acropora was 0.4-0.7°C lower than either Pocillopora species, with a 0.3°C difference between the two Pocillopora species. We also recorded 0.9°C to 1.9°C phenotypic variation in heat tolerance among reefs within species, indicating spatial heterogeneity in heat tolerance across broad environmental gradients. Acute heat tolerance had a strong positive relationship to mild heatwave exposure over the past 35 years (since 1986) but was negatively related to recent severe heatwaves (2016-2020). Phenotypic variation associated with mild thermal history in local environments provides supportive evidence that marine heatwaves are selecting for tolerant individuals and populations; however, this adaptive potential may be compromised by the exposure to recent severe heatwaves.

Changes in coral bacterial communities during a natural bleaching event linked to El Niño in the South China Sea

An understanding of the effects of bleaching on coral bacterial communities is necessary to fully understand how the coral holobiont responds to bleaching. In this study, Illumina sequencing and functional predictions were used to identify taxonomic and metabolic shifts of bacterial community in four coral species during a natural bleaching event linked to El Niño. Results showed that there were distinct differences in the coral microbiome of healthy and bleached coral, with large differences between coral species. For Acropora cytherea and Goniastrea minuta, opportunistic bacteria of Flavobacteriales, Rhodobacterales, and Vibrionales were enriched in the bleached coral. Bacterial community of Pocillopora verrucosa and Pocillopora meandrina was completely distinct from other coral species, in the case of both healthy and bleached corals. Enterobacteriales and Flavobacteriales were highly abundant in bleached coral, while Pseudomonadales, Chlorobiales, Oceanospirillales, Bacillales and Clostridiales were the characteristic groups in healthy coral. Predicted metagenome showed that functional metabolism shifts were consistent with taxon responses. The general metabolic functions in bleaching coral exhibited a different response with healthy coral. Bacterial communities displayed coral specific responses, indicating coral species played an important role in determining the microbiome even during bleaching. This study emphasized that bleaching resulting from El Niño induced a shift in coral microbiome and metabolic functions, increasing the susceptibility of coral to disease.

Underwater Photogrammetry Captures the Initial Recovery of a Coral Reef at Lalo Atoll

Recovery of coral reefs after physical damage sustained from storm events can be affected by various factors. Here, we examined the initial recovery of a coral reef at the southern end of uninhabited Lalo Atoll of Papahānaumokuākea Marine National Monument after its complete destruction by Hurricane Walaka in 2018. While the site was still mostly (98%) covered by a mixture of rubble and sand, surveys utilizing underwater photogrammetry allowed for detailed quantitative assessments of benthic cover and confirmed colonization of coral (Pocillopora meandrina and Porites lobata), macroalgae and sponges. The proportion of sand in the rubble–sand mixture also decreased from the level observed in 2019. Visual fish surveys confirmed the presence of 35 reef fish species, a large increase from no reef fish in 2019, despite the low biotic benthic cover. Overall, the colonization of benthic organisms and the return of reef fish, which is potentially supported by the benthos and cryptofauna in the rubble bed, offer positive signs of reef recovery. The photogrammetric surveys in the present study captured the subtle changes in the benthic cover and provided us with a procedure to continue monitoring the succession of the site. Continuous monitoring of the site should reveal whether the reef returns to the original state of Acropora coral dominance or progresses towards a coral assemblage with a different composition.

Amino acid δ13C and δ15N analyses reveal distinct species-specific patterns of trophic plasticity in a marine symbiosis.

Compound‐specific isotope analyses (CSIA) and multivariate “isotope fingerprinting” track biosynthetic sources and reveal trophic interactions in food webs. However, CSIA have not been widely applied in the study of marine symbioses. Here, we exposed a reef coral (Montipora capitata) in symbiosis with Symbiodiniaceae algae to experimental treatments (autotrophy, mixotrophy, heterotrophy) to test for trophic shifts and amino acid (AA) sources using paired bulk (δ13C, δ15N) and AA‐CSIA (δ13CAA, δ15NAA). Treatments did not influence carbon or nitrogen trophic proxies, thereby not supporting nutritional plasticity. Instead, hosts and symbionts consistently overlapped in essential‐ and nonessential‐δ13CAA (11 of 13 amino acids) and trophic‐ and source‐δ15NAA values (9 of 13 amino acids). Host and symbiont trophic‐δ15NAA values positively correlated with a plankton end‐member, indicative of trophic connections and dietary sources for trophic‐AA nitrogen. However, mass balance of AA‐trophic positions (TPGlx–Phe) revealed heterotrophic influences to be highly variable (1–41% heterotrophy). Linear discriminant analysis using M. capitata mean‐normalized essential‐δ13CAA with previously published values (Pocillopora meandrina) showed similar nutrition isotope fingerprints (Symbiodiniaceae vs. plankton) but revealed species‐specific trophic strategies. Montipora capitata and Symbiodiniaceae shared identical AA‐fingerprints, whereas P. meandrina was assigned to either symbiont or plankton nutrition. Thus, M. capitata was 100% reliant on symbionts for essential‐δ13CAA and demonstrated autotrophic fidelity and contrasts with trophic plasticity reported in P. meandrina. While M. capitata AA may originate from host and/or symbiont biosynthesis, AA carbon is Symbiodiniaceae‐derived. Together, AA‐CSIA/isotope fingerprinting advances the study of coral trophic plasticity and are powerful tools in the study of marine symbioses.

Autumn coral bleaching in Hawai‘i

Coral bleaching in Hawai‘i was first reported in 1996 and subsequently occurred in 2014 and 2015. These largely summer events did not persist past November. In autumn 2019, Hawai‘i experienced persistent warm water until December, resulting in bleaching of many pocilloporid coral colonies, particularly Pocillopora meandrina. We followed the fates of 357 adult P. meandrina and 377 juvenile Pocillopora spp. off Waikīkī on the south shore of O‘ahu. Water temperatures at 5-18 m depth at this site consistently remained above a bleaching threshold of 28°C from September until mid-December. For adult colonies, 96% bleached at least partially, 4% bleached fully, and 11% died by March. Among juvenile colonies, 21% bleached, of which 47% died by March 2020. While mortality was low compared to previous bleaching events in Hawai‘i, such protracted bleaching late into the autumn increases the annual period of temperature stress, which may not bode well for the future of Hawaiian and other high-latitude coral reefs.

The legacy of stress: Coral bleaching impacts reproduction years later

Abstract The extent to which populations persist under environmental stress depends on the reproductive output of individuals that survive the stress. In coral systems, corals bleach in response to stress from elevated water temperature. However, little is known of the extent to which thermal stress impairs the reproductive capacity of the survivors over the following years, limiting the capacity to predict how populations will persist in the Anthropocene. Using histology to quantify the abundance and size of oocytes and spermaries per polyp, we tested how bleaching impairs the reproductive response of the coral Pocillopora meandrina over two reproductive seasons following the 2015 mass bleaching event in the Hawaiian Islands. We found that smaller colonies not only had a greater probability of bleaching but also suffered greater reproductive impacts over a longer time. In contrast, larger colonies generated comparable reproductive output regardless of bleaching severity, although bleached colonies generated smaller oocytes the year after bleaching. These results show that reproductive impacts of bleaching are more complex and size‐specific than commonly assumed. Therefore, estimates of bleaching mortality may underestimate the true impact of thermal stress on populations, especially as populations lose larger individuals from repeated and co‐occurring stressors. A free Plain Language Summary can be found within the Supporting Information of this article.

Combination Analysis of Metatranscriptome and Metagenome Reveal the Composition and Functional Response of Coral Symbionts to Bleaching During an El Niño Event.

With the abnormal rise in ocean temperatures globally in recent years, coral bleaching is becoming common and serious. However, the response mechanisms and processes of coral symbionts to bleaching are not well understood. In this study, metagenomics and metatranscriptomics were used to explore the composition of coral symbionts and their functions in response to coral bleaching. All four bleaching coral species displayed a significant reduction of the abundance and function of Dinophyceae-like eukaryotes at the DNA and RNA levels. However, different species of bleaching coral have their own characteristic symbiotic components. Bleaching Acropora tenuis and Goniastrea minuta corals exhibited a very high abundance of prokaryotes and associated gene functions, especially for opportunistic bacteria. In contrast, algae and fungi were identified as the main microbial associate components and had relatively high RNA abundance in bleaching Pocillopora verrucosa and Pocillopora meandrina. Different coral species, whether unbleached or bleaching, have the same symbiotic taxa that perform the same biological functions in vivo. Different stages of bleaching, or transitional states, were identified by different genome content and functional gene abundance among bleaching corals. These stages should be considered in future coral bleaching studies to accurately determine symbiont structure and function. An implicit hypothesis is that there is a causal relationship between the stability of eukaryotic communities and coral bleaching.

Different nitrogen sources speed recovery from corallivory and uniquely alter the microbiome of a reef-building coral.

Corals are in decline worldwide due to local anthropogenic stressors, such as nutrient loading, and global stressors, such as ocean warming. Anthropogenic nutrient loading, which is often rich in nitrate, inhibits coral growth and worsens corals’ response to warming while natural sources of nitrogen, such as ammonium from fish excretion, promotes coral growth. Although the effects of nutrient loading and ocean warming have been well-studied, it remains unclear how these factors may interact with biotic processes, such as corallivory, to alter coral health and the coral microbiome. This study examined how nitrate vs. ammonium enrichment altered the effects of increased seawater temperature and simulated parrotfish corallivory on the health of Pocillopora meandrina and its microbial community. We tested the effects of nitrogen source on the response to corallivory under contrasting temperatures (control: 26 °C, warming: 29 °C) in a factorial mesocosm experiment in Moorea, French Polynesia. Corals were able to maintain growth rates despite simultaneous stressors. Seawater warming suppressed wound healing rates by nearly 66%. However, both ammonium and nitrate enrichment counteracted the effect of higher temperatures on would healing rates. Elevated seawater temperature and ammonium enrichment independently increased Symbiodiniaceae densities relative to controls, yet there was no effect of nitrate enrichment on algal symbiont densities. Microbiome variability increased with the addition of nitrate or ammonium. Moreover, microbial indicator analysis showed that Desulfovibrionaceae Operational taxonomic units (OTUs) are indicators of exclusively temperature stress while Rhodobacteraceae and Saprospiraceae OTUs were indicators of high temperature, wounding, and nitrogen enrichment. Overall, our results suggest that nitrogen source may not alter the response of the coral host to simultaneous stressors, but that the associated microbial community may be distinct depending on the source of enrichment.

Colony size and depth affect wound repair in a branching coral

Coral colonies regularly suffer tissue damage from natural and anthropogenic sources. The resultant wounds can decrease colony fitness and act as sources of infection or algal overgrowth. By systematically breaking branches on 54 Pocillopora meandrina colonies and following in situ tissue regeneration (April–August 2017), variation in the wound recovery process was investigated within colonies, among colonies, and across four sites on O‘ahu, Hawai‘i. Ninety-five percent of all wounds healed, with an average healing time of 42 days. Average healing time was not different between initial and subsequent wounds. The relative importance of intrinsic factors, extrinsic factors, and disturbance history for the wound repair process was examined. Previous colony stressors, i.e., percent live coral tissue and bleaching history, were not correlated with wound healing time. These results indicate that wound repair is a priority for P. meandrina. Colony size and depth were significantly correlated with wound healing time: larger colonies healed 14 days faster than smaller colonies, and deeper colonies healed 25 days slower than shallower colonies. These findings support the hypothesis that larger colonies have more energy available for tissue regeneration. The observation of longer healing times for deeper colonies is likely driven by extrinsic factors that vary with depth, including temperature, wave energy, and irradiance. Overall, we show that wound healing in P. meandrina is physiologically resilient to previous stressors, but is affected by both colony size and depth. Understanding drivers of variation in regenerative processes for corals is critical for predicting coral population recovery after disturbances.

Trophic plasticity in a common reef‐building coral: Insights from δ13C analysis of essential amino acids

Abstract Reef‐building corals are mixotrophic organisms that can obtain nutrition from endosymbiotic microalgae (autotrophy) and particle capture (heterotrophy). Heterotrophic nutrition is highly beneficial to many corals, particularly in times of stress. Yet, the extent to which different coral species rely on heterotrophic nutrition remains largely unknown because it is challenging to quantify. We developed a quantitative approach to investigate coral nutrition using carbon isotope (δ13C) analysis of six essential amino acids (AAESS) in a common Indo‐Pacific coral (Pocillopora meandrina) from the fore reef habitat of Palmyra Atoll. We sampled particulate organic matter (POM) and zooplankton as the dominant heterotrophic food sources in addition to the coral host and endosymbionts. We also measured bulk tissue carbon (δ13C) and nitrogen (δ15N) isotope values of each sample type. Patterns among δ13C values of individual AAESS provided complete separation between the autotrophic (endosymbionts) and heterotrophic nutritional sources. In contrast, bulk tissue δ13C and δ15N values were highly variable across the putative food sources and among the coral and endosymbiont fractions, preventing accurate estimates of coral nutrition on Palmyra. We used linear discriminant analysis to quantify differences among patterns of AAESS δ13C values, or ‘fingerprints’, of the food resources available to corals. This allowed for the development of a quantitative continuum of coral nutrition that can identify the relative contribution of autotrophic and heterotopic nutrition to individual colonies. Our approach revealed exceptional variation in conspecific colonies at scales of metres to kilometres. On average, 41% of AAESS in P. meandrina on Palmyra are acquired via heterotrophy, but some colonies appear capable of obtaining the majority of AAESS from one source or the other. The use of AAESS δ13C fingerprinting analysis offers a significant improvement on the current methods for quantitatively assessing coral trophic ecology. We anticipate that this approach will facilitate studies of coral nutrition in the field, which are essential for comparing coral trophic ecology across taxa and multiple spatial scales. Such information will be critical for understanding the role of heterotrophic nutrition in coral resistance and/or resilience to ongoing environmental change. A free Plain Language Summary can be found within the Supporting Information of this article.

Coral Resilience at Malauka`a Fringing Reef, Kāneʻohe Bay, Oʻahu after 18 years

Globally, coral reefs are under threat from climate change and increasingly frequent bleaching events. However, corals in Kāneʻohe Bay, Hawaiʻi have demonstrated the ability to acclimatize and resist increasing temperatures. Benthic cover (i.e., coral, algae, other) was compared over an 18 year period (2000 vs. 2018) to estimate species composition changes. Despite a climate change induced 0.96°C temperature increase and two major bleaching events within the 18-year period, the fringing reef saw no significant change in total coral cover (%) or relative coral species composition in the two dominant reef-building corals, Porites compressa and Montipora capitata. However, the loss of two coral species (Pocillopora meandrina and Porites lobata) and the addition of one new coral species (Leptastrea purpurea) between surveys indicates that while the fringing reef remains intact, a shift in species composition has occurred. While total non-coral substrate cover (%) increased from 2000 to 2018, two species of algae (Gracilaria salicornia and Kappaphycus alvarezii) present in the original survey were absent in 2018. The previously dominant algae Dictyosphaeria spp. significantly decreased in percent cover between surveys. The survival of the studied fringing reef indicates resilience and suggests these Hawaiian corals are capable of acclimatization to climate change and bleaching events.

Passive vortical flows enhance mass transport in the interior of a coral colony

Corals exchange nutrients and dissolved gases with the surrounding environment for metabolic purposes. A recent study demonstrated that corals can actively stir quiescent water columns and produce vortical flows that enhance mass transfer rates by up to 400%. Here, three-dimensional immersed-boundary simulations of the flow through a Pocillopora meandrina colony demonstrate that the passive geometric features of the branching colony produce highly vortical internal flows that enhance mass transfer at the interior of the colony, compensating almost exactly for flows speed reductions there of up to 64% so that the advection time scale remains roughly constant throughout the colony.

The Effect of Water Depth and Internal Geometry on the Turbulent Flow Inside a Coral Reef

AbstractThe flow of water through coral reefs controls the transport of mass, momentum, and energy and, as a result, affects key processes such as feeding, photosynthesis, and reproduction. While it is often analyzed as a typical canopy flow, the flow through coral reefs is different from both terrestrial and aquatic canopies. A combination of a nonuniform vertical distribution of porosity and resistance and variations in relative submergence generates regions of high‐velocity gradients, increased integral length scales and instabilities which have not previously been quantified in detail. Here we report on velocity measurements inside and above a laboratory reef made of 81 Pocillopora Meandrina skeletons, for a range of relative submergence and flow rates. Under the action of a pressure gradient, the mean velocity shows an increase in the wake zone, generating a potential source for mixing due to a second inflection point. Unlike classical boundary layers and other canopy flows, a quadrant analysis shows that the number of inward/outward interactions events is larger than sweeps/ejections inside the canopy wake zone, due to the sign change in the mean velocity gradient. The vertical distribution of the integral length scales shows a local maximum in the lower part of the wake zone. Finally, under fully submerged conditions, the stream‐wise turbulent energy spectra inside the reef follow an approximate , as opposed to the expected behavior above the reef. Under near‐emergent conditions, no fit to such a power law could be obtained.

Multiple stressors interact primarily through antagonism to drive changes in the coral microbiome

Perturbations in natural systems generally are the combination of multiple interactions among individual stressors. However, methods to interpret the effects of interacting stressors remain challenging and are biased to identifying synergies which are prioritized in conservation. Therefore we conducted a multiple stressor experiment (no stress, single, double, triple) on the coral Pocillopora meandrina to evaluate how its microbiome changes compositionally with increasing levels of perturbation. We found that effects of nutrient enrichment, simulated predation, and increased temperature are antagonistic, rather than synergistic or additive, for a variety of microbial community diversity measures. Importantly, high temperature and scarring alone had the greatest effect on changing microbial community composition and diversity. Using differential abundance analysis, we found that the main effects of stressors increased the abundance of opportunistic taxa, and two-way interactions among stressors acted antagonistically on this increase, while three-way interactions acted synergistically. These data suggest that: (1) multiple statistical analyses should be conducted for a complete assessment of microbial community dynamics, (2) for some statistical metrics multiple stressors do not necessarily increase the disruption of microbiomes over single stressors in this coral species, and (3) the observed stressor-induced community dysbiosis is characterized by a proliferation of opportunists rather than a depletion of a proposed coral symbiont of the genus Endozoicomonas.

Gradients in Primary Production Predict Trophic Strategies of Mixotrophic Corals across Spatial Scales

Mixotrophy is among the most successful nutritional strategies in terrestrial and marine ecosystems. The ability of organisms to supplement primary nutritional modes along continua of autotrophy and heterotrophy fosters trophic flexibility that can sustain metabolic demands under variable or stressful conditions. Symbiotic, reef-building corals are among the most broadly distributed and ecologically important mixotrophs, yet we lack a basic understanding of how they modify their use of autotrophy and heterotrophy across gradients of food availability. Here, we evaluate how one coral species, Pocillopora meandrina, supplements autotrophic nutrition through heterotrophy within an archipelago and test whether this pattern holds across species globally. Using stable isotope analysis (δ13C) and satellite-derived estimates of nearshore primary production (chlorophyll-a, as a proxy for food availability), we show that P.meandrina incorporates a greater proportion of carbon via heterotrophy when more food is available across five central Pacific islands. We then show that this pattern is consistent globally using data from 15coral species across 16 locations spanning the Caribbean Sea and the Indian and Pacific Oceans. Globally, surface chlorophyll-a explains 77% of the variation in coral heterotrophic nutrition, 86% for one genus across 10 islands, and 94% when controlling for coral taxonomy within archipelagos. These results demonstrate, for the first time, that satellite-derived estimates of nearshore primary production provide a globally relevant proxy for resource availability that can explain variation in coral trophic ecology. Thus, our model provides a pivotal step toward resolving the biophysical couplings between mixotrophic organisms and spatial patterns of resource availability in the coastal oceans.