Plant Disease Management Strategies Research Articles

First Report of Klebsiella variicola Causing Tomato Pith Necrosis in Yunnan Province, China.

Tomato (Solanum lycopersicum L.) is a key vegetable crop in China. In August 2023, an outbreak of bacterial pith necrosis in tomato occurred in Lufeng County, Yunnan Province, China, affecting over 40% of the tomato plants in a greenhouse. The stems of infected plants developed a waterlogged soft rot and the disease progressed, the lower leaves and lateral branches of infected plants gradually wilted and died. A longitudinal cut of the stem revealed hollow pith with brown vascular tissue. To isolate the pathogen, the plant surface was disinfested with 75% ethanol. Then, a piece of infected tissue from the base of the stem was excised and immersed in sterile water for 2 min. A small amount of liquid was streaked onto TTC (2,3,5-triphenyltetrazolium chloride) agar medium using an inoculation loop, and plates were incubated at 28℃ for 24 h. Colonies on the TTC plate were white, indicating that the pathogen was not Ralstonia solanacearum. Colonies grown on LB (Luria-Bertani) agar medium were randomly selected and subjected to preliminary pathogenicity tests. Based on the results, a colony named Kv4 was selected and purified through six subcultures in LB agar medium. Biochemical tests showed the strain utilized D-sorbitol, raffinose and citrate but not adonitol, and was positive for methyl red, D-glucose (acid), urea hydrolysis, lysine decarboxylase, and motility, and negative for phenylalanine deaminase, H2S production, indole production, and ornithine decarboxylase. These characteristics align with Klebsiella species (Garrity et al. 2007). To determine the species of strain Kv4, partial sequences of the 16S rDNA, phoE, leuS, and rpoB genes were amplified (Barrios-Camacho et al. 2019) and sequenced. Through BLASTn analysis, strain Kv4 sequences of 16S rDNA (OR888750) had 99.47% identity (1488/1496 bp), phoE (OR899599) had 98.69% (605/613 bp) identity, leuS (OR899598) had 99.07% identity (959/968 bp), and rpoB (OR899597) had 97.69% (633/648 bp) identity with Klebsiella variicola strain FF0907. Using the ClustalW algorithm in MEGA11 for nucleotide sequence alignment, phylogenetic trees were constructed with 16S and phoE, leuS, and rpoB via the neighbor-joining method, confirming strain Kv4 as K. variicola. To test pathogenicity, the roots of 25 'Moneymaker' tomato plants with four to five true leaves were wounded, then each plant inoculated with a 15 mL bacterial suspension (OD600=0.6) of strain Kv4, while the control plants received sterile water. Plants were incubated at 28℃ with a 16 h photoperiod. Experiments were done twice. At 15 days after inoculation (DAI), all plants inoculated with Kv4 showed yellowing, unevenly distributed small black necrotic spots on the leaf surface, and purple-brown soft rot at the stem base. By 18 DAI, there was a gradual transformation of the stem bases from green to purplish brown. At 21 DAI, 60% of the inoculated plants displayed brownish soft rot at the stem base. In contrast, the control plants remained symptom-free. The pathogen was re-isolated from the stem and identified as K. variicola via sequence analysis of 16S, phoE, leuS, and rpoB. In recent years, several new bacterial pith necrosis diseases were reported in tomato (Guo et al. 2023; Ivić et al. 2023). This is the first study documenting K. variicola causing bacterial pith necrosis in tomato. Once considered a benign plant endophyte, Sun et al. (2023) reported K. variicola causing banana sheath rot in Guangdong and Guangxi Provinces, China. Malik et al. (2023) reported that K. variicola caused leaf streak in sorghum in India. This report of bacterial pith necrosis in tomato caused by K. variicola strain Kv4 underscores the escalating threat posed by emerging pathogens to agricultural production. The emergence of K. variicola as a tomato pathogen complicates plant disease management strategies.

Stinging Nettle (Urtica Simensis): A Review of Its Role in Plant Pathology and Disease Management

Stinging nettle (Urtica simensis) has garnered increasing attention in the realm of plant pathology for its multifaceted role in disease management. This review aims to elucidate the diverse mechanisms by which stinging nettle influences plant pathology and contributes to disease management strategies. Stinging nettle possesses notable allelopathic properties, exerting inhibitory effects on various plant pathogens through the release of allelochemicals. Furthermore, its rich phytochemical composition, including phenolics, flavonoids, and terpenoids, contributes to its antimicrobial activity against a spectrum of plant pathogens. Additionally, stinging nettle exhibits immunomodulatory effects on host plants, enhancing their resistance to pathogen invasion. Moreover, the incorporation of stinging nettle extracts or formulations into integrated disease management approaches has shown promising results in reducing disease incidence and severity in various crops. However, further research is warranted to elucidate the specific mechanisms underlying stinging nettle's efficacy in plant disease management and optimize its utilization in agricultural systems. This review underscores the potential of stinging nettle as a valuable tool in sustainable plant disease management strategies, providing insights for researchers and practitioners alike.

Light-driven incubation of Fusarium species and near-infrared spectroscopy for an early in vitro identification of Fusarium circinatum

This study explores the application of near-infrared (NIR) spectroscopy coupled with multivariate techniques for the rapid and accurate identification of four Fusarium species, with emphasis on the detection of Fusarium circinatum, the causative agent of “Pitch canker” disease in forests, cultured in vitro under distinct light conditions. The impact of two different incubation conditions, near-ultraviolet (NUV) and warm light, on the spectral characteristics of cultures was used as a strategy to improve the early fungal detection using spectroscopy. Spectral data were acquired using a portable NIR spectrometer at 48, 72, and 96 h post-cultivation from various zones of mycelial growth. The results showed distinct spectral profiles among Fusarium species, with notable variations depending on incubation light conditions and growth zones. NUV light conditions significantly improved species differentiation, especially in the central and middle zones of mycelial growth at 72 h post-cultivation (hpc). Partial least squares − discriminant analysis (PLS-DA) model under NUV light conditions provided the best identification strategy, achieving correct classification rates over 97% for all four species from 72 hpc and 82.5% of correct classification of F. circinatum. These findings demonstrate the effectiveness of the NIRS methodology supported with multivariate techniques and combined with optimization of light conditions and mycelial growth zone of cultures, for the early and rapid detection of Fusarium species in culture media, with potential implications for plant pathology diagnostics and disease management strategies.

ENCAPSULATION OF SOYBEAN SEEDS WITH Actinomycetes AS A BIOCONTROL AGENT AGAINST Sclerotium rolfsii Sacc

This study evaluates the effectiveness of Actinomycetes in encapsulating soybean seeds to control damping-off disease caused by Sclerotium rolfsii. With national soybean demand reaching 22 million tons per year and domestic production only 1 million tons, increasing production is essential. One major constraint is the attack of plant pathogens such as S. rolfsii, which can cause significant losses. Actinomycetes were isolated from the rhizosphere of weeds and tested for their antagonistic activity in vitro. Seed encapsulation using various carriers (kaolin, talc, and zeolite) was conducted to determine the most effective formula. In vivo tests showed that the Actinomycetes isolate PM2 exhibited the best antagonistic activity, with the zeolite formulation reducing pre-emergence damping-off disease incidence to 12.50% and post-emergence damping-off to 8.25%, compared to the positive control. These results indicate that the use of Actinomycetes in soybean seed encapsulation is an effective and sustainable method for controlling damping-off disease. Zeolite as a carrier proved to provide a supportive environment for antagonistic microbes, maintaining moisture and supplying necessary nutrients. This research reveals the great potential of Actinomycetes as a biocontrol agent in plant disease management strategies, which can significantly enhance soybean production and support national food security.

Biological Control of Pseudomonas syringae in Tomato Using Filtrates and Extracts Produced by Alternaria leptinellae

Endophytic fungi offer promising alternatives for sustainable plant disease management strategies, often through the production of bioactive secondary metabolites. This study investigated the biocontrol potential of filtrates and extracts, produced under controlled conditions, from Alternaria leptinellae E138 against Pseudomonas syringae in tomato plants under greenhouse conditions. To understand the main mechanisms involved in biocontrol, the direct inhibition of bacterial growth and disruption of quorum sensing activity caused by metabolites were studied in vitro, as well as indirect mechanisms, such as their capacity to produce phytohormone-like substances, nutrient mobilization, and antioxidant activity, which can enhance plant growth and fitness. Moreover, a mass spectrometry analysis was used to tentatively identify the secondary metabolites present in the extract with antimicrobial properties, which could explain the biocontrol effects observed. Mycopriming assays, involving the direct treatment of tomato seeds with the fungal A. leptinellae E138 extracts, produced increased germination rates and seedling vigor in tomato seeds. As another treatment, postemergence application of the extracts in greenhouse conditions significantly improved plant health and resulted in a 41% decrease in disease severity. Overall, this study underscores the potential of A. leptinellae E138 extract as a plant growth promoter with biocontrol capabilities, offering promising avenues for sustainable plant disease management.

First report of Phaeosphaeria caricicola causing leaf spot on Belamcanda chinensis in China.

Belamcanda chinensis (L.) Redouté, a member of the Iridaceae family, is globally well-known for its medicinal value as clearing away heat, detoxifying, detumescence and pain (Qin 2000). In 2021, spots were observed on 40% B. chinensis leaves and about 28 disease index in Wanzhou District (30°32'N; 108°22'E) of Chongqing. Initial symptoms appeared as circular yellow white, sunken spots lesions, and then expanded into irregular lesions, the center of the spots was beige, external layer was light brown and surrounded by yellow halo. Symptomatic leaf tissues (5 × 5 mm) were cut from the infected margin, surface sterilized with 75% ethanol for 1 min, washed with 3% sodium hypochlorite for 3 min, rinsed three times with sterile water, placed on potato dextrose agar (PDA) medium incubated at 25°C for 7 days in the dark, forty isolates with similar morphology were obtained. Three isolates (SG9、SG20 and SG33) was selected for subsequent research. Colonies color changed from beige to light brown color after 14 days on PDA medium. Fungal colonies transformed from beige to brown at the edges after 28 days and light brown on top. Ascomata dark brown, ellipsoidal to globose 116.6 to 253.3 × 89.6 to 172.6 μm in diamensions. Asci stipitate, cylindrical with obtuse ends, and 69.1 to 114.7 × 10.2 to 24.1 μm (n = 30) in size, with eight overlapping linearly biseriate ascospores. Ascospores brown, narrowly fusiform, straight or slightly curved with three transversely septate, slightly constricted at septa, and 9.7 to 12.6 × 27.6 to 32.6 μm (n = 30). These characteristics are consistent with Phaeosphaeria sp. reported by Quaedvlieg et al in 2013. DNA was extracted from representative isolates. The internal transcribed spacer (ITS) region, the large subunit rDNA (LSU), the small subunit rDNA (SSU) and the RNA polymerase II second largest subunit (RPB2) genes were amplified for Polymerase chain reaction (PCR) by used ITS1/ITS4, LR5/LROR, NS1/NS4, and RPB2-5f2/RPB2-7cr primers (White et al. 1990; Vilgalys et al. 1990; Qi M W. et al. 2008; De G. J. et al. 1992). The sequences were submitted to NCBI GenBank: SG-G9 (ITS, OR701701; LSU, OR701699; SSU, OR701700; RPB2, OR738464); SG-G20 (ITS, OQ748032; LSU, OQ780728; SSU, OQ780723; RPB2, OQ779979); SG-G33 (ITS, OQ748033; LSU, OQ780729; SSU, OQ780722; RPB2, OQ779980). A phylogenetic analysis revealed a 99% similarity to the Phaeosphaeria caricicola CBS 603.86 (ITS, KF251182; LSU, GQ387590; SSU, GQ387529; RPB2, KF252189) sequences. Mycelial agar plugs (5-mm diameter) from a 7-day-old PDA culture of a fungal isolate were placed onto pinpricked leaves of three two-year-old B. chinensis plants. While the sterile PDA plugs inoculated in pinpricked leaves of B. chinensis as controls. Inoculated plants were placed in a greenhouse at 25°C and remained 95±1% relative humidity. The inoculated leaves of treatment developed symptoms after 20 days, whereas no symptoms occurred on controls, fulfilling Koch's postulates. The experiments were repeated three times. The fungus was re-isolated and was identical to original isolate by morphologically and molecularly. As far as we know, P. caricicola can cause diseases on carex plants and has been found in Switzerland. This is the first report of P. caricicola causing leaf spot on B. chinensis in China. Along with recording the occurrence of this disease, plant disease management strategies need to be established to reduce losses.

First Report of Pantoea anthophila Causing Shoot Dieback Disease of Ceylon Ironwood (Mesua ferrea) in Malaysia

Ceylon ironwood (Mesua ferrea Linn.) or Penaga lilin is one of Asia's most popular tropical herbal plants, including Malaysia (Sharma et al., 2017). The trees are cultivated for their aesthetic value and pharmacological properties, especially as traditional remedies for asthma, dermatopathy, inflammation, and rheumatic conditions (Adib et al., 2019). In August 2022, a disease survey was conducted on Ceylon ironwood trees ranging from 5 to 12 years old in Botanical Park, Putrajaya, Malaysia, with 80% exhibiting shoot dieback disease of the 15 trees exhibiting shoot dieback disease. Symptoms include irregular, water-soaked with brown lesions on young leaves and shoots, where the small lesion coalesced and formed broad necrotic regions, subsequently causing dieback and gradual defoliation. Three infected shoots were collected from each tree, excised into small pieces (10 to 20 mm), immersed with 75% ethanol for 3 min, washed with 2% NaOCl solution for 1 min, and rinsed twice for 1 min in sterilized distilled water. A 10 µl aliquot of the sample suspension was streaked onto nutrient agar (NA) and incubated for 24 h to 48 h at 35 °C. A total of 15 isolates with similar morphology were obtained, and each isolate was re-streaked three times to obtain pure colonies that were round, smooth, with irregular edges, and produced yellow pigment in culture. All isolates were Gram-negative, negative for indole production, and utilized glucose, maltose, trehalose, sucrose, D-lactose, and pectin. Three representative isolates (C001, C002, and C003) with similar morphology were selected for further characterization. The total genomic DNA of all isolates was extracted from overnight cultures using Geneaid™ DNA Isolation Kit (Geneaid Biotech Ltd., Taiwan). PCR amplification of 16S rDNA (Zhou et al., 2015) and species-specific infB (Brady et al., 2008) genes was performed, and each of the ~1500 bp and ~900 bp amplicons were sequenced. BLASTn and phylogenetic analyses revealed all isolates were 100% identical to Pantoea anthophila (P. anthophila) LGM 2558 strains (Accession Nos. NR_116749 and NR_116113) for the 16S rDNA gene. They were 99% identical to P. anthophila CL1 strain (Accession Number CP110473) for infB gene. These sequences were later deposited in the GenBank (Accession Nos. OQ772233, OQ772234, and OQ772235 for 16S rDNA gene, and OQ803527, OQ803528, and OQ803529 for infB gene). For the pathogenicity test, healthy Ceylon ironwood seedlings' shoots were inoculated with 10 mL of each isolate suspension (1 x 108 CFU/ml) by spraying the inoculum on the young shoots using a sterilized spray bottle. Control seedlings were inoculated with sterile water. The inoculated shoots were covered with a sealed plastic bag to maintain the moisture and were kept in the greenhouse with temperatures ranging from 26 to 35 °C. The experiments were repeated twice, with three replicates for each treatment. Inoculated shoots showed dieback symptoms like natural infection, including irregular, water-soaked, and brown lesions on leaves and young shoots at 10 days post-inoculation. Control seedlings remained asymptomatic. The pathogen was re-isolated and identified via sequencing of the 16S rDNA and infB genes, thus fulfilling Koch’s postulates. Previously, P. anthophila has been reported to cause soft rot in wampee plants in China (Zhou et al., 2015) and leaf blight of cotton in Pakistan (Tufail et al., 2020). To our knowledge, this is the first report of P. anthophila causing shoot dieback disease of Ceylon ironwood trees in Malaysia. Plant disease management strategies need to be established to reduce losses due to P. anthophila infection since the pathogen could limit Ceylon ironwood tree production in Malaysia.

Biocontrol Efficiency of Rhizospheric Bacillus against the Plant Pathogen Fusarium oxysporum: A Promising Approach for Sustainable Agriculture

Among plant disease management strategies, biological control is a sustainable alternative to the use of chemicals for the control of vascular wilt caused by Fusarium oxysporum. Fusarium wilt is the most devastating disease affecting a wide variety of plants. Bacillus species are the most widely used biological control candidates for the control of these fungal diseases. This review describes the pathogenicity of F. oxysporum, its virulence mechanisms, and host plant–pathogen interactions. The control means deployed by Bacillus species inhibit or kill these phytopathogens. Bacillus spp. produce a wide range of secondary metabolites, including volatile and non-volatile organic compounds. Biocontrol potential is achieved through direct antimicrobial activity, the induction of the host plant’s immune response (Induced Systemic Resistance), and competition for nutrients and space. In addition, parameters governing the selection of effective biocontrol agents and their survival in plant microbial communities are discussed. The influence of the microbiota on the establishment and development of biocontrol agents can assess the potential of these treatments and facilitate the development of effective biopesticides during their field application.

Differential Analysis of Three Copper-Based Nanomaterials with Different Morphologies to Suppress Alternaria alternata and Safety Evaluation.

The overuse of copper-based fertilizers and pesticides over the last few decades has resulted in detrimental risks to our environment. Nano-enabled agrichemicals with a high effective utilization ratio have shown great potential for maintaining or minimizing environmental issues in agriculture. Copper-based nanomaterials (Cu-based NMs) serve as a promising alternative to fungicides. Three types of Cu-based NMs with different morphologies were analyzed for their different antifungal effects on Alternaria alternata in this current study. Compared to commercial copper hydroxide water power (Cu(OH)2 WP), all tested Cu-based NMs, including cuprous oxide nanoparticles (Cu2O NPs), copper nanorods (Cu NRs) and copper nanowires (Cu NWs), especially Cu2O NPs and Cu NWs, showed higher antifungal activity against Alternaria alternata. Its EC50 were 104.24 and 89.40 mg L-1, respectively, achieving comparable activity using a dose approximately 1.6 and 1.9-fold lower. Cu-based NMs could introduce the downregulation of melanin production and soluble protein content. In contrast to trends in antifungal activity, Cu2O NPs showed the strongest power in regulating melanin production and protein content and similarly exhibited the highest acute toxicity to adult zebrafish compared to other Cu-based NMs. These results demonstrate that Cu-based NMs could offer great potential in plant disease management strategies.

Genetic diversity and population structure of Venturia inaequalis isolates in apple orchards from Turkey

Apple scab caused by Venturia inaequalis is one of the major diseases of apple orchards worldwide. Genetic variability in pathogen populations present new strategies for management the disease and breeding studies. In this study aimed to evaluate genetic diversity and population structure of 81 V. inaequalis isolates obtained from six provinces of Turkey. Twenty-six iPBS and 20 ISSR primers were investigated for their ability to produce polymorphic bands among the pathogen isolates. The mean percentage of polymorphic bands per primer was 85.48 and 84.87 for iPBS and ISSR markers, respectively. The dendrogram derived from UPGMA cluster analysis based on the combined dataset of iPBS and ISSR markers classified the isolates into two main groups with a genetic similarity of 69%, which no relationship between distribution and geographical origin of the isolates. The dendrogram of Nei's genetic distances Isparta and Sivas populations clustered separately other populations. STRUCTURE analysis showed four populations (K = 4) with the highest mean value of Ln likelihood (−3067.0). The average genetic differentiation (GST) among all populations was 0.105. The overall gene flow (NM) was high level of 4.260. The analysis of molecular variance (AMOVA) showed that 96% of the variation was between the isolates within populations, compared to only 4% was among populations. iPBS marker based on the LTR retrotransposons has been tried for the first time to evaluate intraspecific variation among the isolates of V. inaequalis. Both iPBS and ISSR markers were useful, informative and reliable tools for investigating the genetic diversity of V. inaequalis. The results obtained from the present study provide detailed information about population genetic structure of V. inaequalis in Turkey. These study also will provide new approaches for plant breeders and disease management strategies.

First Report of Lasiodiplodia theobromae Causing leaf spot on Aloe vera L. var. chinensis (Haw.) Berg. in Malaysia.

Aloe vera L. var. chinensis (Haw.) Berg. (family Asphodelaceae), locally known as 'Lidah Buaya', is an economically important plant as the gel from the leaves possesses anti-inflammatory, anti-arthritic, antibacterial, and hypoglycemic properties and is used for cosmetic, pharmaceutical and healing purpose in Malaysia. In July 2021, irregular black sunken spots (3- to 10-mm in diameter) were observed on the leaves of 'Lidah Buaya' plants under leaf development stage in the field located in the district Penampang of Sabah province (N5°56'37.1" E116°04'21.5"). The disease severity was about 30% with 10% incidence. The tissues surrounding the black spots became brown and dry when the plants grew older. No gel contained in the sunken zones. Symptomatic leaf tissues (5 x 5 mm) were cut from the infected margin, surface sterilised with 75% ethanol for 1 minute, washed with 2% sodium hypochlorite solution for 1 minute, rinsed, and air dried before plating on five potato dextrose agar (PDA) plates (pH 7). Plates were incubated at 25°C for 3 days in the dark. Greyish-white fluffy mycelia were observed, and then became dark grey with age. Dark pigmentation in each plate was produced after a week of incubation at 25°C. A representative isolate Penampang was further characterized morphologically and molecularly. Immature conidia were single-celled, aseptate, ellipsoid and hyaline, measuring 19.4 × 24.5 µm (n = 30). Mature conidia were brown, thick-walled and one-septate with longitudinal striations, 22.5 × 28.3 µm (n = 30). Genomic DNA was extracted from fresh mycelia of isolate Penampang based on the extraction method described by Khoo et al. (2021) with additional of mechanical disruption using micro pestle before heating. KOD One PCR master mix (Toyobo, Japan) containing hot-start modified KOD DNA polymerase was used for PCR amplification. The PCR condition were 94°C for 10 s, 55°C for 5 s and 72°C for 2 s, for 30 cycles, and initial denaturation of 94°C for 3 min and a final extension step of 72°C for 5 min. The internal transcribed spacer (ITS) region of rDNA and tubulin (TUB) genes were amplified using ITS1/ITS4 and T10/Bt2b primer sets, respectively (O'Donnell et al. 1997; White et al. 1990). The products were then sent to Apical Scientific Sdn. Bhd. for sequencing. The generated ITS (OK209451) and TUB (OL660667) were 100% identical to L. theobromae isolate MRR-161 and CPC:27690 (GenBank MW282884 and MT592639, respectively) in BLASTn analysis. Phylogenetic analysis using maximum likelihood based on the combined ITS and TUB sequences indicated that the isolates formed a supported clade (91% bootstrap value) to the related L. theobromae. The morphological and molecular characterization of the fungus matched L. theobromae described by Pečenka et al. (2021). Mycelial agar plugs (5-mm-diameter) from 7-day-old PDA culture of Penampang isolate were placed onto pinpricked leaves of three 2-month-old 'Lidah Buaya' plants. Pinpricked leaves of three 2-month-old 'Lidah Buaya' plants received sterile 5-mm-diameter PDA agar plugs to serve as controls. The inoculated 'Lidah Buaya' plants were covered with plastics for 48 h, and were incubated at 25°C. All inoculated leaves developed symptoms as described above 6 to 7 days post-inoculation, whereas no symptoms occurred on controls, thus fulfilling Koch's postulates. The experiments were repeated twice. The reisolated fungus was identical to representative isolate Penampang morphologically and molecularly. L. theobromae was reported previously on A. vera in Cuba (Urtiaga 1986) and India (Mathur 1979). To our knowledge, this is the first report of L. theobromae causing leaf spot on A. vera in Malaysia. The occurrence of this disease emphasizes the importance of disease surveillance in the region. Plant disease management strategies need to be established to reduce the losses.

Mitigating an Epidemic of Resistance with Integrated Disease Management Tactics: Conflicting Management Recommendations from Insecticide Resistance and Epidemiological Models.

Insect-transmitted plant pathogens threaten crop production worldwide. Because a single feeding bout may be sufficient for a vector to transmit a pathogen that kills the plant, treatment thresholds for vectors of plant pathogens are low. For many vector species, overreliance on chemical controls has resulted in evolution of insecticide resistance. Analysis of complementary insecticide resistance and epidemiological models indicated that tactics for delaying resistance evolution conflict with tactics for limiting pathogen spread. Insecticide resistance models support maintaining untreated refuges that serve as a source of susceptible insects that reduce the likelihood of mating among rare resistant insects. In contrast, epidemiological models indicate that movement of vectors from untreated areas to insecticide-treated areas contributes to pathogen spread. Accordingly, epidemiological models support area-wide insecticide spray programs, although resistance models indicate that such an approach is likely to lead to rapid resistance. To mitigate risk of insecticide resistance, additional management approaches must be integrated into plant disease management strategies. The resistance and epidemiological models were used to evaluate effects of integrating application of insecticides with two additional management strategies: deployment of partially resistant plants (plants that are not immune to infection but have lower acquisition and inoculation rates than susceptible plants) and mating disruption (reduced vector birth rate in mating disruption-treated areas). Deployment of partially resistant plants reduced the risk that untreated areas served as a source of inoculative vectors. Mating disruption reduced the risk of resistance by suppressing growth of insecticide-resistant populations and benefited disease management by reducing vector abundance. Simulation results indicated that by targeting multiple aspects of the plant-pathogen-vector system, pathogen spread could be suppressed and resistance delayed. Implementation of such an approach will require innovations in vector control and sustained efforts in plant breeding.

Aromatic Agriculture: Volatile Compound-Based Plant Disease Diagnosis and Crop Protection

Volatiles exist ubiquitously in nature. Volatile compounds produced by plants and microorganisms confer inter-kingdom and intra-kingdom communications. Autoinducer signaling molecules from contact-based chemical communication, such as bacterial quorum sensing, are relayed through short distances. By contrast, biogenic volatiles derived from plant-microbe interactions generate long-distance (>20 cm) alarm signals for sensing harmful microorganisms. In this review, we discuss prior work on volatile compound-mediated diagnosis of plant diseases, and the use of volatile packaging and dispensing approaches for the biological control of fungi, bacteria, and viruses. In this regard, recent developments on technologies to analyze and detect microbial volatile compounds are introduced. Furthermore, we survey the chemical encapsulation, slow-release, and bio-nano techniques for volatile formulation and delivery that are expected to overcome limitations in the application of biogenic volatiles to modern agriculture. Collectively, technological advances in volatile compound detection, packaging, and delivery provide great potential for the implementation of ecologically-sound plant disease management strategies. We hope that this review will help farmers and young scientists understand the nature of microbial volatile compounds, and shift paradigms on disease diagnosis and management to aromatic (volatile-based) agriculture.

SUSTAINABLE PLANT PEST MANAGEMENT THROUGH OPTIMIZATION AND MINIMIZATION

Plant pests and diseases have significant negative impacts on global food security, world trade and rural livelihoods. Climate change exacerbates these impacts in certain parts of the world. Overreliance on pesticides as the primary tool for plant pest management leads to problems such as pesticide resistance and pest resurgence. Environmental and food safety concerns are also associated with overuse of pesticides in crop production. There is clearly a need for a shift in pest management strategies and practices globally. Optimization of structures and functions in crop production agroecosystems through soil conservation practices and cropping diversification can improve pest regulation services provided in the systems. Prioritization of safer alternatives and practices in the IPM pyramid, such as resistant varieties and biopesticides, helps minimize the use of potentially risky agricultural inputs such as synthetic pesticides. Investment is needed to boost the development of innovative green technologies and practices. Production, distribution, use and regulatory capacities need to be strengthened to facilitate large-scale adoption of green technologies and practices. Finally, policy, financial and market instruments should be wielded to provide an enabling environment for the transformation to sustainable plant pest and disease management strategies and practices worldwide.

Suppression of Bacterial Leaf Spot by Green Synthesized Silica Nanoparticles and Antagonistic Yeast Improves Growth, Productivity and Quality of Sweet Pepper.

Plants are challenged with many kinds of biotic stresses caused by different living organisms, which result in various types of diseases, infections, and damage to crop plants and ultimately affect crop productivity. Plant disease management strategies based on current approaches are necessary for sustainable agriculture. A pot experiment was carried out under greenhouse conditions to evaluate the potential of green synthesized silica nanoparticles (SiO2-NPs) and antagonistic yeast (Saccharomyces cerevisiae) against pepper bacterial leaf spot disease, caused by Xanthomonas vesicatoria. In addition, to assess their efficacy and suppressive effects in reducing disease severity and improving sweet pepper growth, productivity, and quality. Results revealed that the combination of BCA (5%) and SiO2-NPs (150 ppm) was the most effective treatment for reducing disease severity and improving vegetative growth characters, mineral contents (N, P, K, Ca, Mg, and Si in leaves), as well as stimulating polyphenol oxidase (PPO) activity of sweet pepper leaves at 90 days from transplanting, while also at harvesting time enhancing sweet pepper fruit yield quality parameters significantly. In conclusion, green synthesized silica nanoparticles combined with antagonistic yeast have the potential to suppress a bacterial leaf spot disease with ecologically-sound management, while also boosting sweet pepper growth, productivity, and quality.

Lack of gene flow between Phytophthora infestans populations of two neighboring countries with the largest potato production.

Gene flow is an important evolutionary force that enables adaptive responses of plant pathogens in response to changes in the environment and plant disease management strategies. In this study, we made a direct inference concerning gene flow in the Irish famine pathogen Phytophthora infestans between two of its hosts (potato and tomato) as well as between China and India. This was done by comparing sequence characteristics of the eukaryotic translation elongation factor 1 alpha (eEF‐1α) gene, generated from 245 P. infestans isolates sampled from two countries and hosts. Consistent with previous results, we found that eEF‐1α gene was highly conserved and point mutation was the only mechanism generating any sequence variation. Higher genetic variation was found in the eEF‐1α sequences in the P. infestans populations sampled from tomato compared to those sampled from potato. We also found the P. infestans population from India displayed a higher genetic variation in the eEF‐1α sequences compared to China. No gene flow was detected between the pathogen populations from the two countries, which is possibly attributed to the geographic barrier caused by Himalaya Plateau and the minimum cross‐border trade of potato and tomato products. The implications of these results for a sustainable management of late blight diseases are discussed.

Enhancement of the antifungal activity of thyme and dill essential oils against Colletotrichum nymphaeae by nano-encapsulation with copper NPs

Nanotechnology is a quickly growing field and have been actually used in a varied assortment of marketable products worldwide. Nanoencapsulation demonstrations the advantage of more efficient and targeted use of pesticides in an environmentally friendly way. Research and development in post-harvest nanotechnology can help to preserve food freshness and quality and prevent diseases in a relatively safer way. In this regard, essential oils (EOs) represent promising agents for reducing food decay and development of pathogen microorganisms. The overall aim of the present study was to encapsulate Iranian thyme (Thymus daenensis L) and dill (Anethum graveolens L.) EOs in copper nanoparticles (NPs) and to evaluate their antifungal activity against the phytopathogen Colletotrichum nymphaeae. Encapsulation of thyme and dill EOs with copper NPs resulted effective in reducing the mycelium growth even by 90% after 9 days treatment. Furthermore a strong inhibitory effect on conidia germination of C. nymphaeae was observed. SEM observations indicated that C. nymphaeae treated with EOs, copper NPs and encapsulated EOs, showed deformation in mycelial growth and hyphae twisting. In summary, these results showed that nano-encapsulation of EOs with NPs, using safe materials, increased the perspective of their effectiveness as new plant disease management strategies.

Annual Review of Phytopathology, 2016

Development of novel plant disease management strategies requires knowledge of the co-evolution or arms race, affecting phenotypic variations of disease in nature. Advances in understanding genetics of disease resistance and its functional aspects, especially pathogensecreted (elicitors/effectors) and host surveillance (effector targets) molecules, underpin the recognition and specificity in plant–pathogen interactions at the molecular level operating through cellautonomous, multilayered immune system in plants. Seven of the 25 reviews in this volume connect to this theme, demonstrating the significance and expectations from it for better crop improvement. Two of these chapters (Hawes et al. and Deleris et al. – annotated below) even take a step closer in connecting plant and animal immunity systems.

Investigating the variables influencing the application of nonchemical pest control methods in cucumber greenhouses (case study: Pishva County)

Scientific investigations indicate that the technology expansions and the increases in the uses of additives, pesticides, antibiotics and hormones in the production of foodstuff in the developing countries have been accompanied by adverse and undeniable effects on the humans’ health during the recent decades. The present study aims at investigating the variables influencing the application of nonchemical pest control methods in cucumber greenhouses in a case study of the conservatories in Pishva County. The study population included all the Pishva County greenhouse owners who had been solely raising cucumber in 2016 reaching in number to 87 greenhouse owners. According to the limited number of the study population, they were all selected as the study sample volume based on a census sampling method; out of the study population, 83 individuals were at hand. The study instrument was a questionnaire the validity of which was confirmed through inquiring ideas from the university professors and its reliability was also verified based on Cronbach’s alpha coefficient within a 79% to 86% range. The results obtained for the collective effectiveness of the independent variables on the dependent variable through taking advantage of multiple regression tests signify that such variables as economic, informational and cognitive and promotional barriers have contributed to greenhouse owners’ lack of interest in making use of nonchemical pest control and plant disease management strategies.

Cluster: A New Application for Spatial Analysis of Pixelated Data for Epiphytotics.

Spatial analysis of epiphytotics is essential to develop and test hypotheses about pathogen ecology, disease dynamics, and to optimize plant disease management strategies. Data collection for spatial analysis requires substantial investment in time to depict patterns in various frames and hierarchies. We developed a new approach for spatial analysis of pixelated data in digital imagery and incorporated the method in a stand-alone desktop application called Cluster. The user isolates target entities (clusters) by designating up to 24 pixel colors as nontargets and moves a threshold slider to visualize the targets. The app calculates the percent area occupied by targeted pixels, identifies the centroids of targeted clusters, and computes the relative compass angle of orientation for each cluster. Users can deselect anomalous clusters manually and/or automatically by specifying a size threshold value to exclude smaller targets from the analysis. Up to 1,000 stochastic simulations randomly place the centroids of each cluster in ranked order of size (largest to smallest) within each matrix while preserving their calculated angles of orientation for the long axes. A two-tailed probability t test compares the mean inter-cluster distances for the observed versus the values derived from randomly simulated maps. This is the basis for statistical testing of the null hypothesis that the clusters are randomly distributed within the frame of interest. These frames can assume any shape, from natural (e.g., leaf) to arbitrary (e.g., a rectangular or polygonal field). Cluster summarizes normalized attributes of clusters, including pixel number, axis length, axis width, compass orientation, and the length/width ratio, available to the user as a downloadable spreadsheet. Each simulated map may be saved as an image and inspected. Provided examples demonstrate the utility of Cluster to analyze patterns at various spatial scales in plant pathology and ecology and highlight the limitations, trade-offs, and considerations for the sensitivities of variables and the biological interpretations of results. The Cluster app is available as a free download for Apple computers at iTunes, with a link to a user guide website.