Plant Defense System Research Articles

Modulation of Terpenoid Indole Alkaloid Biosynthesis in Catharanthus roseus by Sphingomonas Sp Y503 via the CrMAPKKK1-CrMAPKK1/CrMAPKK2-CrMPK3 Signaling Cascade.

Catharanthus roseus is a highly relevant model for investigating plant defense mechanisms and the biosynthesis of therapeutically valuable compounds, including terpenoid indole alkaloids (TIAs). It has been demonstrated that beneficial microbial interactions can regulate TIA biosynthesis in C. roseus, highlighting the need to fully comprehend the molecular mechanisms involved to efficiently implement eco-friendly strategies. This study explores the effects of a novel microbial strain, Y503, identified as Sphingomonas sp., on TIA production and the underlying mechanisms in C. roseus. Through bioinformatics analysis, we have identified 17 MAPKKKs, 7 MAPKKs, and 13 MAPKs within the C. roseus genome. Further investigation has verified the presence of the MAPK module (CrMAPKKK1-CrMAPKK1/CrMAPKK2-CrMPK3) mediating Y503 in regulating TIA biosynthesis in C. roseus. This study provides foundational information for strengthening the plant defense system in C. roseus through advantageous microbial interactions, which could contribute to the sustainable cultivation of medicinal plants such as C. roseus.

Unveiling the mycobiome of ecological importance from termitarium soils

BackgroundTermitarium is an intricate biological home with exceptional physicochemical soil properties and numerous beneficial microbiomes. The termitarium microbiome plays a role in several bionetwork processes. It contributes significantly to sustainable agriculture, forestry, and horticulture. In contrast to the immense number of research works focusing on termitarium bacteria and archaea, the amount of study about termitarium fungal communities is limited. This is despite the fact that fungi significantly contribute to the cycling of energy and matter on Earth. Thus, this study investigates the metagenomic datasets from termitarium soil collected from agricultural soils, to obtain a depiction of their mycobiome of ecological importance.ResultsOur dataset showed that Ascomycota was the most rank phylum, while Basidiomycota was the next in rank. Specifically, we identified numerous fungi of commercially importance, for example, producers of cellulases and cellulosomes. This was strengthened with the presence of functional genes/enzymes capable of promoting plant growth traits and defence system. Analysis further shown that soil properties influenced the distribution of fungal communities. Magnesium, nitrogen, and potassium, for example, were observed to be among the best predictor of fungal distribution and explained 87.40% of the total variation.ConclusionThis study epitomize further insights into the mycobiome of termitarium soils that are of ecological interest. Again, with some of our sequences assembled as uncategorized fungi, further studies are recommended for the evaluation of the metabolic potentials of these fungi as there is a possibility of the discovery of new fungi or genes of industrial or environmental applications.

Salicylic Acid and Melatonin Synergy Enhances Boron Toxicity Tolerance via AsA-GSH Cycle and Glyoxalase System Regulation in Fragrant Rice.

Background: Boron is an essential micronutrient for plant growth and productivity, yet excessive boron leads to toxicity, posing significant challenges for agriculture. Fragrant rice is popular among consumers, but the impact of boron toxicity on qualitative traits of fragrant rice, especially aroma, remains largely unexplored. The individual potentials of melatonin and salicylic acid in reducing boron toxicity are less known, while their synergistic effects and mechanisms in fragrant rice remain unclear. Methods: Thus, this study investigates the combined application of melatonin and salicylic acid on fragrant rice affected by boron toxicity. One-week-old seedlings were subjected to boron (0 and 800 µM) and then treated with melatonin and salicylic acid (0 and 100 µM, for 3 weeks). Results: Boron toxicity significantly impaired photosynthetic pigments, plant growth, and chloroplast integrity while increasing oxidative stress markers such as hydrogen peroxide, malondialdehyde, methylglyoxal, and betaine aldehyde dehydrogenase. Likewise, boron toxicity abridged the precursors involved in the 2-acetyl-1-pyrroline (2-AP) biosynthesis pathway. However, individual as well as combined application of melatonin and salicylic acid ameliorated boron toxicity by strengthening the antioxidant defense mechanisms-including the enzymes involved during the ascorbate-glutathione (AsA-GSH) cycle and glyoxalase system-and substantially improved 2-AP precursors including proline, P5C, Δ1-pyrroline, and GABA levels, thereby restoring the 2-AP content and aroma. These findings deduce that melatonin and salicylic acid synergistically alleviate boron toxicity-induced disruptions on the 2-AP biosynthesis pathway by improving the 2-AP precursors and enzymatic activities, as well as modulating the physio-biochemical processes and antioxidant defense system of fragrant rice plants. Conclusions: The findings of this study have the potential to enhance rice productivity and stress tolerance, offering solutions to improve food security and sustainability in agricultural practices, particularly in regions affected by environmental stressors.

Hormetic response of blackgram (Vigna mungo) seeds treated with organic extract of seaweeds

Seaweed extract has gained popularity in agriculture due to global trend of promoting sustainable agricultural development. Seaweed contains phytohormones such as IAA and gibberellin and minerals that induce seeds germination. While conventional extraction of seaweeds has been carried out with different organic solvents such as ethanol and methanol, the present study uses natural and commonly available organic liquids i.e., water, vinegar, fermented buttermilk, and cow urine as extracting agents to make them suitable for regenerative agriculture. The organic solvents used in this study have a known nutritional composition and facilitate the enhancement of plant defense systems. Three seaweed species, Caulerpa racemosa, Gracilaria edulis, and Sargassum wightii, were extracted with different solvents at various concentrations and compared. The mineral analysis and FTIR characterization of different seaweeds and their extracts showed variation in composition and functional groups. Seaweed species, however, showed no variation in seed germination. Fermented buttermilk and water extract improved the germination properties of blackgram between 0.1–5% concentrations and led to higher increase in shoot and root length and biomass yield. The hormetic response by blackgram to the seaweed extract was observed starting at an average of 2% concentration with toxicity at 5% concentration and above for water and fermented buttermilk extract. However, vinegar and cow urine extracted seaweed showed toxicity symptoms even at lower concentrations (0.1%) inhibiting germination. Therefore, water and buttermilk extract may be recommended at 0.5–1% for enhanced germination.

Exogenous γ-aminobutyric acid enhanced salt-alkaline tolerance in mulberry trees through transcriptomic sequencing analysis

Soil salinization is a widespread abiotic stress in China and one of the most critical factors affecting agricultural production and food security. γ-Aminobutyric acid (GABA) is a non-protein amino acid widely found in vertebrates, plants, and microorganisms, regulating the nervous system as well as plant defense systems. Mulberry is rich in GABA and exhibits extensive adaptability to various environments. In this study, we explored the possibility of alleviating salinity and alkalinity stress in mulberry seedlings using GABA and elucidating the intrinsic mechanisms by which GABA enhances salt-alkaline tolerance in mulberry trees through transcriptomic sequencing analysis. The results showed that 1 mM exogenous GABA enhanced the activities of mulberry seeds under saline-alkali stress, significantly increased the activities of POD and CAT (P < 0.01), reduced the level of reactive oxygen species and the content of malondialdehyde in mulberry seedlings and facilitated the growth and development of adventitious roots of mulberry. Transcriptomic analysis showed that GABA promoted the development and growth of adventitious roots of mulberry under saline-alkali stress by regulating the synthesis and modification of the cell wall, phytohormone signal transduction, and the conversion of starch and monosaccharides. Furthermore, the expression of pathogen pattern recognition receptors on the cell membrane of mulberry root system cells increased, enhancing the defense ability of mulberry root system cells. It is suggested that MYB, PME, SBT, EXP, DIR, POD, and the ARR family of transcription factors could be used as the target genes for further in-depth research.

Zinc oxide nanoparticles mediated salinity stress mitigation in Pisum sativum: a physio-biochemical perspective

Salinity is the major abiotic stress among others that determines crop productivity. The primary goal is to examine the impact of Zinc Oxide Nanoparticles (ZnO NPs) on the growth, metabolism, and defense systems of pea plants in simulated stress conditions. The ZnO NPs were synthesized via a chemical process and characterized by UV, XRD, and SEM. The ZnO NPs application (50 and 100) ppm and salt (50 mM and 100 mM) concentrations were carried out individually and in combination. At 50 ppm ZnO NPs the results revealed both positive and negative effects, demonstrating an increase in the root length and other growth parameters, along with a decrease in Malondialdehyde (MDA) and hydrogen peroxide concentrations. However, different concentrations of salt (50 mM and 100 mM) had an overall negative impact on all assessed parameters. In exploring the combined effects of ZnO NPs and salt, various concentrations yielded different outcomes. Significantly, only 50 mM NaCl combined with 50 ppm ZnO NPs demonstrated positive effects on pea physiology, leading to a substantial increase in root length and improvement in other physiological parameters. Moreover, this treatment resulted in decreased levels of MAD, Glycine betaine, and hydrogen peroxide. Conversely, all other treatments exhibited negative effects on the assessed parameters, possibly due to the high concentrations of both stressors. The findings offered valuble reference data for research on the impact of salinity on growth parameters of future agriculture crop.

Unraveling the mechanisms of biochar and steel slag in alleviating lithium stress in tomato (Solanum lycopersicum L.) plants via modulation of antioxidant defense and methylglyoxal detoxification pathways

With progress in technology, soaring demand for lithium (Li) has led to its release into the environment. This study demonstrated the mitigation of the adverse effects of Li stress on tomato (Solanum lycopersicum L.) by the application of waste materials, namely coconut shell biochar (CBC) and steel slag (SS). To explore the impact of Li treatment on tomato plants different morphological, biochemical parameters and plant defense system were analyzed. Tomato plants exposed to Li had shorter roots and shoots, lower biomass and relative water contents, and showed decreases in physiological variables, as well as increases in electrolyte leakage and lipid peroxidation. However, the application of CBC and SS as passivators, either singly or in combination, increased growth variables of tomato and relieved Li-induced oxidative stress responses. The combined CBC and SS amendments reduced Li accumulation 82 and 90% in tomato roots and shoots, respectively, thereby minimizing the negative impacts of Li. Antioxidant enzymes SOD, CAT, APX and GR reflected 4, 5, 30, and 52% and glyoxalase enzymes I and II 7 and 250% enhancement in presence of both CBC and SS in Li treated soil, with a concurrent decrease in methylglyoxal content. Lithium treatment triggered oxidative stress, increased enzymatic and non-enzymatic antioxidant levels, and induced the synthesis of thiols and phytochelatins in roots and shoots. Hence, co-amendment with CBC and SS protected tomato plants from Li-induced oxidative damage by increasing antioxidant defenses and glyoxalase system activity. Both CBC, generated from agricultural waste, and SS, an industrial waste, are environmentally benign, safe, economical, and non-hazardous materials that can be easily applied on a large scale for crop production in Li-polluted soils. The present findings highlight the novel reutilization of waste materials as renewable assets to overcome soil Li problems and emphasize the conversion of waste into wealth and its potential for practical applications.

Precise partial root-zone irrigation technique and potassium-zinc fertigation management improve maize physio-biochemical responses, yield, and water use in arid climate

BackgroundTo optimize irrigation water use and productivity, understanding the interactions between plants, irrigation techniques, and fertilization practices is crucial. Therefore, the experiment aims to assess the effectiveness of two application methods of potassium humate combined with chelated zinc under partial root-zone drip irrigation techniques on maize nutrient uptake, yield, and irrigation water use efficiency across two irrigation levels.MethodsOpen-field experiments were carried out in two summer seasons of 2021 and 2022 under alternate and fixed partial root-zone drip irrigation techniques to investigate their impacts at two irrigation levels and applied foliar and soil applications of potassium humate or chelated zinc in a sole and combinations on maize.ResultsDeficit irrigation significantly increased hydrogen peroxide levels and decreased proline, antioxidant enzymes, carbohydrate, chlorophyll (a + b), and nutrient uptake in both partial root-zone techniques. The implementation of combined soil application of potassium humate and chelated zinc under drought conditions on maize led to varying impacts on antioxidant enzymes and nutritional status, depending on the type of partial root-zone technique. Meanwhile, the results showed that fixed partial root-zone irrigation diminished the negative effects of drought stress by enhancing phosphorus uptake (53.8%), potassium uptake (59.2%), proline (74.4%) and catalase (75%); compared to the control. These enhancements may contribute to improving the defense system of maize plants in such conditions. On the other hand, the same previous treatments under alternate partial root zone modified the defense mechanism of plants and improved the contents of peroxidase, superoxide dismutase, and the uptake of magnesium, zinc, and iron by 81.3%, 82.3%, 85.1%, 56.9%, and 80.2%, respectively.ConclusionsAdopting 75% of the irrigation requirements and treating maize plants with the soil application of 3 g l−1 potassium humate combined with 1.25 kg ha−1 chelated zinc under alternate partial root-zone technique, resulted in the maximum root length, leaf water content, chlorophyll content, yield, and irrigation water use efficiency.

Green Routes: Exploring Protein-Based Virus-like Nanoparticle Transport and Immune Activation in Nicotiana benthamiana for Biotechnological Applications.

Viral, bacterial, fungal, and nematode infections cause significant agricultural losses, with limited treatment options, necessitating novel approaches to enhance plant defense systems and protection against pathogens. Virus-like nanoparticles (VLPs), extensively used in animal and human therapies (e.g., vaccines and immune enhancers), hold potential for novel agricultural solutions and advancing plant nanotechnology. This study employed various methodologies, including VLP production, confocal microscopy, and real-time qPCR. Our findings demonstrated the presence of 30 nm Qβ-VLPs, fluorescently labeled, within the intercellular space of Nicotiana benthamiana leaves one hour post-infiltration. Furthermore, infiltration with Qβ-VLPs led to an upregulation of key defense genes (NbPR1a, NbPR5, NbNPR, NbERF1, NbMYC2, and NbLRR2) in treated plants. Using RT-qPCR, a significant increase in the relative expression levels of defense genes was observed, with sustained high levels of NbERF1 and NbLRR2 even after 24 h. These findings suggest that Qβ-VLPs effectively upregulate genes crucial for pathogen defense in N. benthamiana, initiating PAMP-triggered immunity and launching signaling cascades that enhance defense mechanisms. This innovative application of VLPs to activate plant defense programs advances plant nanobiotechnology, offering new agricultural solutions.

Development of super-infective ternary vector systems for enhancing the Agrobacterium-mediated plant transformation and genome editing efficiency.

Agrobacterium-mediated transformation remains a cornerstone of plant biology, fueling advancements in molecular genetics, new genomic techniques (NGTs), and the biotech industry. However, recalcitrant crops and technical hurdles persist as bottlenecks. The goal was to develop super-infective ternary vector systems that integrate a novel salicylic acid-degrading enzyme, GABA, and ethylene-degrading enzymes, targeting the transformation of crops by neutralizing plant defense system on Agrobacterium. Firstly, both the effect and activity of introducing enzymes were validated in EHA105, an important Agrobacterium strain. Our study demonstrates that all ternary vector (Tv) system variants significantly enhance reporter expression in transient assays with Nicotiana benthamiana and Cannabis sativa. Specifically, incorporating a constitutive virG mutation with novel enzyme combinations increased GFP and RUBY expression in C. sativa by >5-fold and 13-fold, respectively. The Tv system, combined with a geminivirus replicon, markedly boosted GUS gene expression in tomato, enhancing genome editing efficiency. Notably, compared to controls, Tv-VS demonstrated up to 18-fold and 4.5-fold increases in genome editing efficiency in C. sativa and tomato, respectively. Additionally, stable transformation rates in tomato and Arabidopsis improved significantly, with Tv-VS showing a remarkable 2.5-fold increase in transformation efficiency compared to control strains. The research marks notable progress in Agrobacterium-mediated plant transformation. The innovative ternary vectors overcome plant defense mechanisms, enabling genetic manipulation in previously challenging plant species. This development is anticipated to broaden the applications of plant genetic engineering, contributing to advancements in crop genome editing.

Enhancing Sugarcane Seedling Resilience to Water Stress through Exogenous Abscisic Acid: A Study on Antioxidant Enzymes and Phytohormone Dynamics.

Exogenous hormones play a crucial role in regulating plant growth, development, and stress tolerance. However, the effects of exogenous abscisic acid (ABA) on sugarcane seedlings under water stress remain poorly understood. Here, in this study, a pot experiment was conducted on sugarcane seedlings 4 weeks after transplanting, employing three treatments: control (normal growth), drought (water stress), and drought + ABA (foliar application of 100 μM ABA before water stress). The main objectives of this research are to understand the effects of exogenous ABA on sugarcane seedlings under water stress conditions and to assess the changes in antioxidant enzyme activity and phytohormone levels in response to exogenous ABA. Water stress was induced in the solution culture by adding 25% (w/v) polyethylene glycol (PEG) 6000 to the Hoagland solution. Leaf samples were collected at 3, 6, and 9 days after treatment, and the photosynthetic and biochemical responses of ABA-treated plants to drought stress were investigated. The indole acetic acid (IAA) activity of the ABA-treated drought plants is compared to that of drought plants. Moreover, the endogenous ABA levels of the ABA-treated drought plants were significantly enhanced by 42.2, 39.9, and 42.3% at 3, 6, and 9 days, respectively, compared to those of drought plants. Additionally, the proline content of the ABA-treated drought plants significantly increased by 45 and 80% at 6 and 9 days, respectively, compared to that of drought plants. The expression of the catalase 1 (CAT1) gene was increased in the ABA-treated drought plants by 2.1-fold, 0.7-fold, and 1.37-fold at 3, 6, and 9 days, respectively, compared to that in drought plants. Similarly, the expression of superoxide dismutase, peroxidase, and ascorbate peroxidase genes of the ABA-treated drought plants also increased compared to those of the drought plants. In conclusion, foliar application of ABA mitigated the negative effects of water shortage of sugarcane plants under water stress. Applying ABA improved the antioxidant defense system of sugarcane plants under drought stress, thereby enhancing their photosynthetic activities and productivity.

Diversity, abundance, and domain architecture of plant NLR proteins in Fabaceae

The resistance (R) gene family in plants is a vital component of the plant defense system, enabling host resistance against pathogens through interactions with pathogen effector proteins. These R genes often encode nucleotide-binding (NB-ARC or N) and leucine-rich-repeat (LRR or L) domains, collectively forming the NLR protein family. The NLR proteins have been widely explored in crops from Poaceae and Brassicaceae, but limited studies are available for crops in other families, including Fabaceae. To address this gap, we conducted a comprehensive genome-wide analysis of putative NLR proteins in nine Fabaceae crops, including Glycine max, Lupinus angustifolius, Medicago truncatula, Pisum sativum, Phaseolus vulgaris, Trifolium pratense, Vigna angularis, Vigna radiata, and Vigna unguiculata. Our study revealed a substantial variation in the number of NLR proteins, independent of genome size. Notably, the NB-ARC domain exhibited a preferential co-occurrence with a specific LRR domain (IPR001611) in Fabaceae. Furthermore, through protein signature analysis, we identified both species-specific and shared domains across the nine crops. By classifying the identified proteins into seven distinct classes (N, L, CN, TN, NL, CNL, and TNL), we observed species-specific clustering within the CN, TN, and CNL classes, reflecting the diversification of species within Fabaceae. This genome-wide study enhances our understanding of the NLR protein repertoire and comprehensive protein signatures in nine Fabaceae species and provides valuable insights into plant defense mechanisms.

Silicon nonspecifically affects aggressiveness in Fusarium head blight pathogens

Silicon (Si) has been largely regarded to have no selection pressure on plant pathogens because it regulates plant defense system to reduce pathogen infection and development and does not directly affect pathogen itself; however, its effect seems to be specific in some pathogen-host plant interactions. In Fusarium head blight (FHB), associated with devastating agronomic effects on total yield and grain quality, which infects higher Si-absorbers and –accumulators wheat and barley plants; its effect on aggressiveness is unknown. To clarify the nature of reduction of FHB symptoms upon Si treatment at the earliest and latest development stages, we analyzed Si effect on nine aggressiveness components obtained under several experimental conditions. We used 16 fungal isolates of varying aggressiveness and eight bread wheat, durum wheat and barley cultivars with contrast susceptibility to disease. The positive effect of Si on enhancing host resistance against Fusarium infection in the young and adult host parts showed that the nine components evaluated in this study were negatively impacted by Si. Definitely, Si at 1.7 mM reduced equally FHB symptoms from the highest and least pathogenic isolates of the four tested Fusarium species regardless of botanical background for the used plant materials. This indicates for the first time that Si nonspecifically affects aggressiveness in FHB pathogens. Our results reveal that Si could be a valuable tool in integrated pathogen management by suppressing pathogen development on wheat and barley when affected by Fusarium. Most importantly, no hazard exists to emergence of Si-resistant pathogen populations upon Si applications on diverse FHB populations.

Mitigating salinity stress and improving cotton productivity through integrative use of gypsum and compost amendments with exogenous proline

Abiotic constraints, such as salinity, significantly damage crop yields worldwide. Cotton, though moderately salt-tolerant, suffers from reduced growth and yield under saline-sodic soil conditions. Effective integrated mitigation strategies are crucial to address this challenge. Our study, conducted in Lodhran, Punjab, Pakistan, investigated six treatments using an integrated strategy such as gypsum, compost and exogenous proline combining effect in improving cotton productivity under salinity stress. We assessed plant growth, agronomic traits, physio-chemical parameters, cotton yield, and soil characteristics. Our experimental results showed that the combined application of amendments such as T5: gypsum + proline and T6: compost + proline gave better results as compared to individual treatments (T2, T3 & T4) over the control (T1). A significant improvement was observed in plant length and dry weights of shoot and root by 64 %, 81 % and 47 %, respectively under the effect of T5, also increased cotton yield up to 2 folds (888 kg) over control (324 kg ha−1). Likewise, significant improvement in the plant physio-chemical parameters was recorded such as high activities of antioxidant enzymes and the maximum accumulation of malondialdehyde (MDA) content by 60–71 %, as well as reduction in the oxidative burst by 55–65 % after the integrated treatments (T5 & T6) as compared to salt-stressed plants (control). Likewise, contents of nutrients are improved in plants viz., N: 70; P: 61 %; K: 33 % and Mg: 86 % under the positive effect of gypsum + proline over control. Results of soil analysis showed that the soil was moderately saline-sodic. Furthermore, soil analysis revealed that there was a significant improvement in NPK, S and Mg content in the soil after treated salt-stressed soil with gypsum and compost (T2, T3, T5 and T6) while a significant reduction was observed in Ca (17 %) and Na content (28 %), as well as EC (dSm−1) was decreased by 38 % and SAR (mmol/L)1/2 by 27 % under the effect of gypsum + proline over the control treatment. The outcomes of the current study reveal that the reclamation potential of gypsum and compost applied individually or together with exogenous proline improved plant growth, yield and plant defense system under salinity stress.

Acetylresveratrol (AC-Res): An Evolving Frontier in Modulating Gene Expression

Background: Acetylresveratrol (AC-Res), to date, is a powerful stilbene phytoalexin generated organically or as a component of a plant's defensive system, is a significant plant phenolic chemical portion and is investigated as a therapy option for a number of disorders. Owing to its inadequate stabilisation and considerable conformation rigidity, the utility of AC-Res as a medication is limited. Objective: The current review article outlined the structure of AC-Res, their methods of activity, and the latest technological progress in the administration of these molecules. It is conceivable to deduce that AC-Res has a variety of consequences for the cellular functions of infected cells. Methods: The literature survey for the present article was gathered from the authentic data published by various peer-reviewed publishers employing Google Scholar and PubMedprioritizing Scopus and Web of Science indexed journals as the search platform focusing on AC-Res pharmacological actions, particularly in the English language. Result: Despite its extensive spectrum of biological and therapeutic applications, AC-Res has become a source of increasing concern. Depending on the researchers, AC-Res possesses radioprotective, cardioprotective, neurological, anti-inflammatory, and anti-microbial potential. It also has anti-cancer and antioxidant properties. Conclusion: To avoid non-specific cytotoxicity, optimization efforts are presently emphasizing the possible usage of AC-Res based on nanocrystals, nanoparticles and dendrimers, and nanocrystals. Finally, while using AC-Res in biology is still a way off, researchers agree that if they continue to explore it, AC-Res and similar parts will be recognized as actual possibilities for a variety of things in the next years.

Biocontrol agents modulate phyllosphere microbiota interactions against pathogen Pseudomonas syringae

The pathogen Pseudomonas syringae, responsible for a variety of diseases, poses a considerable threat to global crop yields. Emerging biocontrol strategies employ antagonistic microorganisms, utilizing phyllosphere microecology and systemic resistance to combat this disease. However, the interactions between phyllosphere microbial dynamics and the activation of the plant defense system remain poorly understood. Here we show significant alterations in phyllosphere microbiota structure and plant gene expression following the application of biocontrol agents. We reveal enhanced collaboration and integration of Sphingomonas and Methylobacterium within the microbial co-occurrence network. Notably, Sphingomonas inhibits P. syringae by disrupting pathogen chemotaxis and virulence. Additionally, both Sphingomonas and Methylobacterium activate plant defenses by upregulating pathogenesis-related gene expression through abscisic acid, ethylene, jasmonate acid, and salicylic acid signaling pathways. Our results highlighted that biocontrol agents promote plant health, from reconstructing beneficial microbial consortia to enhancing plant immunity. The findings enrich our comprehension of the synergistic interplays between phyllosphere microbiota and plant immunity, offering potential enhancements in biocontrol efficacy for crop protection.

A method for mining condition-specific co-expressed genes in Camellia sinensis based on k-means clustering

BackgroundAs one of the world’s most important beverage crops, tea plants (Camellia sinensis) are renowned for their unique flavors and numerous beneficial secondary metabolites, attracting researchers to investigate the formation of tea quality. With the increasing availability of transcriptome data on tea plants in public databases, conducting large-scale co-expression analyses has become feasible to meet the demand for functional characterization of tea plant genes. However, as the multidimensional noise increases, larger-scale co-expression analyses are not always effective. Analyzing a subset of samples generated by effectively downsampling and reorganizing the global sample set often leads to more accurate results in co-expression analysis. Meanwhile, global-based co-expression analyses are more likely to overlook condition-specific gene interactions, which may be more important and worthy of exploration and research.ResultsHere, we employed the k-means clustering method to organize and classify the global samples of tea plants, resulting in clustered samples. Metadata annotations were then performed on these clustered samples to determine the “conditions” represented by each cluster. Subsequently, we conducted gene co-expression network analysis (WGCNA) separately on the global samples and the clustered samples, resulting in global modules and cluster-specific modules. Comparative analyses of global modules and cluster-specific modules have demonstrated that cluster-specific modules exhibit higher accuracy in co-expression analysis. To measure the degree of condition specificity of genes within condition-specific clusters, we introduced the correlation difference value (CDV). By incorporating the CDV into co-expression analyses, we can assess the condition specificity of genes. This approach proved instrumental in identifying a series of high CDV transcription factor encoding genes upregulated during sustained cold treatment in Camellia sinensis leaves and buds, and pinpointing a pair of genes that participate in the antioxidant defense system of tea plants under sustained cold stress.ConclusionsTo summarize, downsampling and reorganizing the sample set improved the accuracy of co-expression analysis. Cluster-specific modules were more accurate in capturing condition-specific gene interactions. The introduction of CDV allowed for the assessment of condition specificity in gene co-expression analyses. Using this approach, we identified a series of high CDV transcription factor encoding genes related to sustained cold stress in Camellia sinensis. This study highlights the importance of considering condition specificity in co-expression analysis and provides insights into the regulation of the cold stress in Camellia sinensis.

Plant virus transmission during seed development and implications to plant defense system.

Most plants produce large amounts of seeds to disperse their progeny in the environment. Plant viruses have evolved to avoid plant resistance mechanisms and use seeds for their dispersal. The presence of plant pathogenic viruses in seeds and suppression of plant host defenses is a major worldwide concern for producers and seed companies because undetected viruses in the seed can represent a significant threat to yield in many economically important crops. The vertical transmission of plant viruses occurs directly through the embryo or indirectly by getting in pollen grains or ovules. Infection of plant viruses during the early development of the seed embryo can result in morphological or genetic changes that cause poor seed quality and, more importantly, low yields due to the partial or ubiquitous presence of the virus at the earliest stages of seedling development. Understanding transmission of plant viruses and the ability to avoid plant defense mechanisms during seed embryo development will help identify primary inoculum sources, reduce virus spread, decrease severity of negative effects on plant health and productivity, and facilitate the future of plant disease management during seed development in many crops. In this article, we provide an overview of the current knowledge and understanding of plant virus transmission during seed embryo development, including the context of host-virus interaction.

Myrosinase isogenes in wasabi (Wasabia japonica Matsum) and their putative roles in glucosinolate metabolism

BackgroundWasabi, a Brassicaceae member, is well-known for its unique pungent and hot flavor which is produced from glucosinolate (GSL) degradation. Myrosinase (MYR) is a principle enzyme catalyzing the primary conversion of GSLs to GSL hydrolysis products (GHPs) which is responsible for plant defense system and food quality. Due to the limited information in relation to MYRs present in wasabi (Wasabia japonica M.), this study aimed to identify the MYR isogenes in W. japonica and analyze their roles in relation to GSL metabolism.ResultsIn results, WjMYRI-1 was abundantly expressed in all organs, whereas WjMYRI-2 showed only trace expression levels. WjMYRII was highly expressed in the aboveground tissues. Interestingly, WjMYRII expression was significantly upregulated by certain abiotic factors, such as methyl jasmonate (more than 40-fold in petioles and 15-fold in leaves) and salt (tenfold in leaves). Young leaves and roots contained 97.89 and 91.17 µmol‧g−1 of GSL, whereas less GSL was produced in mature leaves and petioles (38.36 and 44.79 µmol‧g−1, respectively). Similar pattern was observed in the accumulation of GHPs in various plant organs. Notably, despite the non-significant changes in GSL production, abiotic factors treated samples enhanced significantly GHP content. Pearson’s correlation analysis revealed that WjMYRI-1 expression significantly correlated with GSL accumulation and GHP formation, suggesting the primary role of WjMYRI-1-encoding putative protein in GSL degradation. In contrast, WjMYRII expression level showed no correlation with GSL or GHP content, suggesting another physiological role of WjMYRII in stress-induced response.ConclusionsIn conclusions, three potential isogenes (WjMYRI-1, WjMYRI-2, and WjMYRII) encoding for different MYR isoforms in W. japonica were identified. Our results provided new insights related to MYR and GSL metabolism which are important for the implications of wasabi in agriculture, food and pharmaceutical industry. Particularly, WjMYRI-1 may be primarily responsible for GSL degradation, whereas WjMYRII (clade II) may be involved in other regulatory pathways induced by abiotic factors.

Pseudomonas protegens controlled brown rot (Monilinia fructicola) on peach fruit in postharvest by suppressing fungal development and inducing plant defense-related genes

Brown rot, caused by Monilinia fructicola (Wint.) Honey is one of the world's most economically important stone fruit diseases, incurring significant losses during pre-harvest and post-harvest phases. This study demonstrated the inhibitory effect of an endophyte bacterium Pseudomonas protegens (strain QNF1), isolated from Chinese leek (Allium tuberosum) roots. The in vitro experiment revealed that P. protegens significantly suppressed M. fructicola mycelial growth by 67.11 % and 95.53 % in the potato dextrose agar (PDA) and potato dextrose broth (PDB) media compared to the control. P. protegens cell-free supernatants (CFS) also restrained M. fructicola mycelial growth by 97.95 %. In addition, the in vivo experiment displayed P. protegens reduced brown rot of peach fruit inoculated with M. fructicola plug and dipped into M. fructicola fermentation broth by 81.57 % and 85.58 %, respectively. Moreover, P. protegens improved the peach fruit quality to a certain extent. In the early stage, P. protegens significantly induced defense-related genes, including superoxide dismutase (SOD), catalase (CAT), phenylalanine ammonia-lyase (PAL), polyphenol oxidase (PPO), chitinase (CHI), and beta-1,3-glucanases (GLU). Through gas chromatography-mass spectrometry and liquid chromatography-MS analysis, 21 and 19 principal metabolites were identified in P. protegens, respectively. Among them, pyroglutamic acid, lysine, valine, tryptophan, tyrosine, and methionine were discovered by both analysis methods. The study revealed that P. protegens reduced the brown rot of peach fruit by suppressing fungal development and inducing plant defense systems. The main findings of the study proved that P. protegens represents a promising alternative for controlling the brown rot of peach fruit and other stone fruits during storage.