Analytical solutions of boundary-valued problems for aboveground topography and underground buried structures, especially for sites with overlying seawater, have always been challenging. Based on the region decomposition technique (RDT) and Hankel integral transform method (HITM), SV-waves scattering by the convex circular topography with seawater and underlying tunnel in a saturated half-space is solved. The primary problem is tackling additional scattered waves introduced by the water–soil interface and convex topography, while ensuring boundary conditions are all met. To this end, scattering wave potential functions in cylindrical coordinates are first transformed into the Hankel integral form in Cartesian coordinates. This greatly facilitates the straightforward application of free boundary conditions at the soil–seawater flat interface, rather than making a large circular arc approximate assumption, which, in turn, avoids the resultant accumulating errors. Secondly, scattering problem to be solved is mathematically and analytically formulated as solving a 5 × 5 linear equation system comprised of wave functions inside the convex topography and lining tunnel while satisfying all physical continuous boundary conditions. This is the main innovation and resulting consequence from the theoretical derivation process. Finally, validation of numerical examples between this paper, existing studies and theoretical analysis further demonstrates the reliability and general adaptability of solutions. Parametric studies of the incident SV waves are conducted to investigate the spatially varying seismic response. The effects of SV-waves incident angles and frequencies, tunnel burial depth, tunnel lining thickness, saturated soil porosity, and seawater depth are investigated and analyzed in detail. This study provides a feasible scheme of investigating the dynamic response of complex submarine sites, which is of great significance for both theoretical value and engineering purposes.