Investigating the mineralogical compositions of soils under different geological formations becomes imperative for maximizing agricultural productivity and ensuring the long-term viability of agricultural practices. Therefore, studies were carried out on mineral compositions and diversities of soils developed over the Basement complex rock, Coastal plain sands and Ewekoro formations in Ogun state Nigeria. A total of nine profile pits (three per location) of 2 m × 1 m × 2 m size were dug in all the three locations. Soil samples were collected from the pedogenic horizons of each profile pits in replicates into a well labeled polyethylene bag. Using X-ray diffractometry (XRD) and scanning electron microscopy (SEM) the mineral contents and their relative abundance, elemental compositions and morphologies of the fine sand, coarse silt and clay fractions of the soils at different topographic positions were identified, described and compared. Results obtained from XRD and SEM analyses exhibited similarities. The most abundant elements in the basement complex and Ewekoro pedon were oxygen, carbon and silicon whereas in the coastal plain sand pedon, oxygen, carbon and aluminum were the most abundant element. The presence of mixed-layer illite, mica, kaolinite, quartz, hematite, anatase, goethite, and chlorite at varying degrees was observed in the pedons developed on these geological formations, although kaolinite and quartz dominated the soil matrix. The mineralogical complexity of the pedons followed the order of basement complex > coastal plain sand > Ewekoro formation. Profiles developed on the Ewekoro formation exhibited the highest degree of weathering, as evidenced by their chemical properties and mineralogical compositions. The petrographic evaluation of the three geological formations revealed that all pedons were rich in quartz and exhibited varying degrees of mineral complexity and maturation. The overlapping and distinct characteristics among the geologies indicated different stages of weathering. By using the mineral maturity index, profiles developed over the basement complex rock and the coastal plain sand could be regarded as sub-matured and this could have contributed significantly to the native fertility of these soils and profiles from the Ewekoro formation were the most weathered. The use of Ewekoro formation for agriculture would necessitate significant investments in agro-inputs and sound principles of soil management through integrated soil fertility management.