Variation In Pigmentation Research Articles

Variation in lanternfish (Myctophidae) photophore structure: A comprehensive comparative analysis

The deep-sea open ocean habitat (below 200 m depth) is comprised of little-to-no light, near freezing temperatures, and vastly connected stratified waters. Bioluminescence is often linked to the success and diversification of fishes in these dark deep-sea habitats, which are host to many species-rich and morphologically diverse clades. Fish bioluminescence takes many forms and is used in a variety of behaviors including counterillumination, prey detection and luring, communication, and predator avoidance. This study focuses on lanternfishes (Myctophidae), a diverse group (252 spp. in 34 genera) of deep-sea fishes in which bioluminescence has played a critical role in their diversification. Using histological techniques, we provide new morphological analyses of the complex structure of the primary photophores of representative species from 17 genera in which photophore morphology has not previously been described. We combine this information with data from prior studies to compare primary photophore characteristics for species representing all 34 lanternfish genera. Although we find that lanternfish primary photophores are similar in many of their structural components, including the possession of a modified scale cup, photocytes, pigment, and reflector layers, we observe significant variation among species in other aspects of photophore morphology. Observed morphological differences include variation in pigmentation and in the calcification and thickness of the modified scale cup. We also find reflectors that are very thin or absent in gymnoscopeline and lampanyctine species, relative to the robust reflectors present in myctophine species. We find evidence of secondary reflectors and secondary pigment layers in six lanternfish species and observe major differences in scale-lens thickness and mineralization across the assemblage. Lastly, Scopelopsis multipunctatus is the only species analyzed lacking a photophore cup. Obtaining finer detail of light organ morphology across this species-rich lineage provides much-needed insight into the factors that have contributed to the remarkable diversity of lanternfishes in the deep open ocean.

Morpho butterfly flashiness crucially depends on wing scale curvature

Morpho butterflies are widely known for their brilliant blue and flashy colours, which are produced by intricate wing scale structures. Not all species display a vibrant structural coloration; some are whitish or even brown. This suggests that there is considerable interspecific variation in wing scale anatomy, pigmentation and flashiness. As evidenced by numerous studies, the optical mechanism that creates the bright structural colours resides in the multilayered ridges of the wing scales, but the interspecific variation in flashiness has so far received little attention. Here, we investigate the wing components that influence the directional wing reflectivity. We therefore selected three species that greatly vary in colour and flashy appearance, Morpho sulkowskyi , M. helenor and M. anaxibia . Applying morphological analyses, (micro-)spectrophotometry and imaging scatterometry on wing pieces and individual wing scales, we demonstrate that wings with flat scales produce highly directional reflections, whereas wings stacked with curved scales scatter light into a wider angular space, resulting in a spatially more diffuse appearance. We thus find that the curvature of the wing scales crucially determines the directionality of Morpho ’s visual display. We discuss how the visual ecology of Morpho butterflies and environmental conditions can drive the evolution of flashy visual displays.

Spatiotemporal distribution of sedimentary chloropigments and organic carbon in a shelf sea ecosystem, with a focus on the cold water mass

The Yellow Sea is one of the most thoroughly studied shelf seas in the northwestern Pacific. However, many aspects of the northern Yellow Sea sediments remain poorly understood. Sedimentary chloropigments and total organic carbon (TOC) are crucial components that indicate benthic primary productivity and ecosystem functioning in the marginal sea system. The present study investigated the temporal and spatial variations of sediment chloroplastic pigments (Chl-a and Pha-a) and TOC contents in relation to seasons and the northern Yellow Sea Cold Water Mass (NYSCWM). Decadal trends were also examined using linear regression on time-series data from 12 cruises conducted over a nine-year period (2006–2014). The correlations between sedimentary Chorophy-a (Chl-a), Pheophorbide-a (Pha-a), TOC, and their ratios with other abiotic and biotic factors were analyzed to detect any effects of the NYSCWM on the spatiotemporal distribution of sediment Chl-a, Pha-a, TOC contents, as well as the ecological relevance of their ratios as indicators of food quality (freshness) in the benthic system. The NYSCWM substantially influences the spatial and seasonal distribution of sedimentary Chl-a, Pha-a, and TOC contents. High values of Pha-a, TOC, and the ratios of Pha-a/(Chl-a + Pha-a) and TOC/Chl-a were often observed in the central region of the NYSCWM, where Chl-a showed clear seasonal fluctuations while Pha-a and TOC remained relatively constant. While sedimentary TOC appears to negatively mirror the spatial pattern of primary productivity in the water column, the spatial pattern of sedimentary Chl-a in relation to NYSCWM is less evident. However, the contents of Pha-a and TOC in the central NYSCWM sediments were higher than those at surrounding NYSCWM stations. Surface sediment Pha-a/(Chl-a + Pha-a) ratio was negatively correlated with meiofauna abundance and biomass and positively correlated with nematode/copepod ratio. This finding indicates that the quality of sediment organic matter is important to meiofauna. Conversely, the lower organic degradation rate at the lower bottom temperature of the NYSCWM may explain the observed higher Pha-a and TOC contents in its central area. Time-series data collected over nine years at the NYSCWM stations showed a decreasing trend for Chl-a, while TOC and the ratio of Pha-a/(Chl-a + Pha-a) exhibited increasing tendencies. This trend may imply a reduced quality of food supply to the benthic food web in the shelf sea system, along with degraded ecosystem functioning and service under the impacts of global change and anthropogenic disturbances.

Responses of the Allium cepa L. to Heavy Metals from Contaminated Soil.

Heavy metals can accumulate and migrate in soil environments and can negatively affect crops and consumers. Because an increased incidence of chronic diseases can be observed, food security has become a high-priority concern. In the present work, we evaluate the impact of heavy metals on bioactive compounds and elemental content from onions. Plants were grown in the absence and presence of various concentrations of heavy metal salts (Pb, Mn, Cu, Zn, Ni and Cd). The influence of heavy metal salts on onions was evaluated by analyzing the content of bioactive compounds, antioxidant capacity, and elemental content. The variation of assimilatory pigments, total polyphenols content, and antioxidant capacity increased or decreased depending on the heavy metal added to the soil as well as on the amount added. Regarding the amount of bioactive compounds, it increased between 6.79 and 34.39% or decreased between 4.68 and 62.42%. The content of ten elements in plants was reported, as well as elemental mutual correlation and correlation of element content with biologically active compounds and antioxidant capacity.

Light Color Regulation of Photosynthetic Antennae Biogenesis in Marine Phytoplankton.

Photosynthesis in the world's oceans is primarily conducted by phytoplankton, microorganisms that use many different pigments for light capture. Synechococcus is a unicellular cyanobacterium estimated to be the second most abundant marine phototroph, with a global population of 7 x 1026 cells. This group's success is partly due to the pigment diversity in their photosynthetic light harvesting antennae, which maximize photon capture for photosynthesis. Many Synechococcus isolates adjust their antennae composition in response to shifts in the blue:green ratio of ambient light. This response was named Type 4 chromatic acclimation (CA4). Research has made significant progress in understanding CA4 across scales, from its global ecological importance to its molecular mechanisms. Two forms of CA4 exist, each correlated with the occurrence of one of two distinct but related genomic islands. Several genes in these islands are differentially transcribed by the ambient blue:green light ratio. The encoded proteins control the addition of different pigments to the antennae proteins in blue versus green light, altering their absorption characteristics to maximize photon capture. These genes are regulated by several putative transcription factors also encoded in the genomic islands. Ecologically, CA4 is the most abundant of marine Synechococcus pigment types, occurring in over 40% of the population oceanwide. It predominates at higher latitudes and at depth, suggesting that CA4 is most beneficial under sub-saturating photosynthetic light irradiances. Future CA4 research will further clarify the ecological role of CA4 and the molecular mechanisms controlling this globally important form of phenotypic plasticity.

Purple maize arabinoxylan could protect antioxidant compounds during digestion

Purple maize is a pigmented variety rich in antioxidants. Arabinoxylans (AX) are prebiotic compounds also found in the grain wall that can form gels. Recently, antioxidants have extensively been studied for their beneficial effects. However, these bioactive compounds do not easily reach the intestine in a stable form. These gels can protect certain compounds during in vitro digestion. This work aimed to extract the AX and simultaneously obtain the antioxidant compounds present in the external walls of the purple maize grain to produce gels with 2% and 4% AX to apply an in vitro digestion method. Popcorn maize (unpigmented) was used as a control. The amount of ferulic acid, polyphenols, and anthocyanins, and their antioxidative activity, were measured at in vitro digestion of the gels. This work highlights the ability of AX gels to enhance the potential bioavailability of antioxidant compounds including anthocyanins from purple maize after digestion.

Mutagenesis selection and large-scale cultivation of non-green Chlamydomonas reinhardtii for food applications.

The green alga Chlamydomonas reinhardtii is an accepted food ingredient in the United States of America (United States), the European Union, Singapore, and China. It can be consumed in unlimited quantities. As this alga is rich in nutrients, proteins, and rough polysaccharides and contains a balanced proportion of various amino acids, it is an excellent raw material for food production. Although various edible brown and green algae are available on the market, their color and strong grassy flavor have constrained their popularity among consumers, thereby limiting their application in food additives and animal feed. Chlorophyll-deficient C. reinhardtii mutants were developed using atmospheric and room temperature plasma (ARTP) technology. A yellow-colored C. reinhardtii variant (A7S80) cultivated in dark conditions was isolated. This light-sensitive variant has a mutation in the chlM gene, and it can grow heterotrophically using acetate as a carbon source. Compared to wild-type C. reinhardtii, A7S80 has significantly lower chlorophyll levels, reduced grassy flavor, and more diverse pigments, with considerable potential for commercial application in human and animal food production, as well as in pharmaceutical and cosmetic industries.

Machine Learning Approach to Support Taxonomic Discrimination of Mayflies Species Based on Morphologic Data.

Artificial intelligence (AI) and machine learning (ML) offer objective solutions in the elaboration of taxonomic keys, such as the processing of large numbers of samples, aiding in the species identification, and optimizing the time required for this process. We utilized ML to study the morphological data of eight species of Americabaetis Kluge 1992, a diverse genus in South American freshwater environments. Decision trees were employed, examining specimens from the Museu de Entomologia da Universidade Federal de Viçosa (UFVB/Brazil) and literature data. Eleven morphological traits of taxonomic importance from the literature, including frontal keel, shape of the mouthparts, and abdominal color pattern, were analyzed. The decision tree obtained with the Gini algorithm effectively differentiates eight species (40% of the known species), using only eight morphological characters. Our analysis revealed distinct groups within Americabaetis alphus Lugo-Ortiz and McCafferty 1996a, based on variations in abdominal tracheae pigmentation. This study introduces a novel approach, integrating AI techniques, biological collections, and literature data for aid in the Americabaetis species identification. It provides a valuable tool for taxonomic research on contemporary and extinct mayflies.

Molecular Mechanisms Underlying the Spectral Shift in Zebrafish Cone Opsins.

Visual pigments are essential for converting light into electrical signals during vision. Composed of an opsin protein and a retinal-based chromophore, pigments in vertebrate rods (Rh1) and cones (Rh2) have different spectral sensitivities, with distinct peak absorption wavelengths determined by the shape and composition of the chromophore binding pocket. Despite advances in understanding Rh1 pigments such as bovine rhodopsin, the molecular basis of spectral shifts in Rh2 cone opsins has been less studied, particularly the E122Q mutation, which accounts for about half of the observed spectral shift in these pigments. In this study, we employed molecular modeling and quantum mechanical techniques to investigate the molecular mechanisms behind the spectral difference in blue-shifted Rh2-1 (absorption peak = 467 nm, 122Q) and green-shifted Rh2-4 (absorption peak = 505 nm, 122E) zebrafish cone opsins. We modeled the pigments 3D structures based on their sequences and conducted all-atom molecular dynamics simulations totaling 2 microseconds. Distance analysis of the trajectories identified three key sites: E113, E181, and E122. The E122Q mutation, previously known, validates our findings, while E181 and E113 are newly identified contributors. Structural analysis revealed key features with differing values that explain the divergent spectral sensitivities of Rh2-1 and Rh2-4: 1) chromophore atom fluctuations and C5-C6 torsion angle, 2) binding pocket volume, 3) hydration patterns, and 4) E113-chromophore interaction stability. Quantum mechanics further confirms the critical role of residue E181 in Rh2-1 and E122 in Rh2-4 for their spectral behavior. Our study provides new insights into the molecular determinants of spectral shifts in cone opsins, and we anticipate that it will serve as a starting point for a broader understanding of the functional diversity of visual pigments.

A long noncoding RNA at the cortex locus controls adaptive coloration in butterflies

Evolutionary variation in the wing pigmentation of butterflies and moths offers striking examples of adaptation by crypsis and mimicry. The cortex locus has been independently mapped as the locus controlling color polymorphisms in 15 lepidopteran species, suggesting that it acts as a genomic hotspot for the diversification of wing patterns, but functional validation through protein-coding knockouts has proven difficult to obtain. Our study unveils the role of a long noncoding RNA (lncRNA) which we name ivory, transcribed from the cortex locus, in modulating color patterning in butterflies. Strikingly, ivory expression prefigures most melanic patterns during pupal development, suggesting an early developmental role in specifying scale identity. To test this, we generated CRISPR mosaic knock-outs in five nymphalid butterfly species and show that ivory mutagenesis yields transformations of dark pigmented scales into white or light-colored scales. Genotyping of Vanessa cardui germline mutants associates these phenotypes to small on-target deletions at the conserved first exon of ivory. In contrast, cortex germline mutant butterflies with confirmed null alleles lack any wing phenotype and exclude a color patterning role for this adjacent gene. Overall, these results show that a lncRNA gene acts as a master switch of color pattern specification and played key roles in the adaptive diversification of wing patterns in butterflies.

Uncovering molecular mechanisms for amelanotic/hypopigmented primary cutaneous melanoma.

A portion of approximately 2-20% of cutaneous melanoma (CM) are diagnosed as amelanotic/hypopigmented melanoma (AHM) and represent a challenge for early diagnosis. Since the degree to which somatic mutations and copy number aberrations (CNA) in genes associated with skin-lightening or albinism may contribute to the loss of tumour pigmentation in AHM samples has not yet been addressed, we have investigated loss of function mutations of key pigmentation genes in matched germline and AHM as well as pigmented melanoma (PM) tumour DNA samples. An analysis of clinical and histopathological characteristics together with whole exome sequencing data of 34 fresh frozen primary CM, graded according to the amount of pigmentation present was performed. Together with germline and somatic variant analysis, 30 samples were previously analysed for CNA changes. This study focussed on germline and somatic variants in the coding region of 16 genes known to be associated with albinism/hypopigmentation or variation in human pigmentation in all samples. Chromosomal regions encompassing these 16 genes were examined for DNA copy loss or gain. The finding that red hair related MC1R and TYR R402Q loss of activity gene variant alleles and genotypes are associated with AHM was validated in this study. Germline AHM-related gene variants were enriched in 70% (n=7 of 10) of AHM patients vs 8.3% (n=2 of 24) of PM patients. This surprisingly high frequency of rare germline variants in AHM patients constitutes the "first hit" and confirms that AHM patients are more likely to be albinism allele carriers than patients with PM. Next, in CNA analysis of each tumour sample, 50% (n=4 of 8) AHM samples with a pigmentation gene variant had LOH in the region containing the corresponding gene, and 25% (=2 of 8) had loss-of-heterozygosity (LOH) in chromosomal regions of two AHM-related genes. This study proposes that the likely molecular mechanism for development of amelanogenesis in AHM is carriage of an albinism/hypopigmentation allele followed by LOH of the corresponding gene in the tumour.

Comparative anatomy of siphons in tellinoidean clams (Bivalvia, Tellinoidea).

Siphons are tubular organs formed by fusion and posterior extension of the marginal mantle folds. They are supposed to have performed key roles in the evolution of bivalves by enabling these animals to occupy several ecological niches. However, anatomical details of these organs are scarce for one of the most diverse lineages of tropical bivalves, the superfamily Tellinoidea. We investigated the siphonal morphology of 15 species, sampling five tellinoidean families, by integrating scanning electron microscopy, confocal microscopy, and histology. The siphons revealed variations in length, pigmentation, tentacles, papillae, and number of nerve cords. Due to the presence of sensorial structures, such as papillae and tentacles, we reclassify the siphons of Tellinoidea from type A to A+. Additional anatomical patterns were identified at family and genus levels. For example, the incurrent siphon shorter than the excurrent and 24 tentacles are putative synapomorphies of Donacidae. We also highlight shared siphonal traits between Donacidae and Solecurtidae as well as between Semelidae and Tellinidae. In addition, our data support the idea of Psammobiidae as a paraphyletic lineage. Overall, we provide an extensive comparative data set on siphonal traits with significant relevance for bivalve taxonomy, functional anatomy, and evolutionary investigations.

Development of a continuous electrochemical reactor incorporated with waste-derived activated carbon electrode for the effective removal of hexavalent chromium from industrial effluent.

Being a recognized carcinogen, hexavalent chromium is hazardous to both human and environmental health. Thus, it is imperative to regulate and oversee their levels in a variety of industries, including textiles, dyes, pigments, and metal finishing. This study strives to reduce Cr(VI) in wastewater by using capacitive deionization in conjunction with an activated carbon-based electrode and a continuous electrochemical reactor (CER). Activated carbon derived from rubberwood sawdust demonstrated excellent properties, including a high surface area of 1157 m2g-1. The electrical conductivity and mechanical stability of the electrode were enhanced by the incorporation of synthesized expanded graphite (EG) into the AC. Key parameters were optimized via systematic batch electroreduction experiments with an optimal response surface design. The efficacy of the fabricated CER was proved when it successfully reduced Cr(VI) in a 5mg L-1 solution within 15min under optimized conditions, in contrast to the considerably longer durations anticipated by conventional methods. Validation of these findings was done by treating industrial wastewater of 30mg L-1 in the CER. The electroreduction of Cr(VI) followed the Langmuir isotherm with a maximum capacity of 13.491mgg-1 and pseudo-second-order kinetics. These results indicate that the combined use of the modified AC electrode and CER holds potential as a sustainable and economical approach to effectively eliminate Cr(VI) from wastewater.

Perturbation of periodic spot-generation balance leads to diversified pigmentation patterning of harlequin Phalaenopsis orchids: in silico prediction

BackgroundA retrotransposon HORT1 in the promoter of the anthocyanin activator gene PeMYB11, microRNA858 (miR858) that targets PeMYB11, and a repressor PeMYBx have been implicated in pigmentation patterning diversity of harlequin Phalaenopsis orchids. However, the interrelationship among them remains to be elucidated.ResultsTo understand how these factors interact to generate anthocyanin spots in Phalaenopsis, we successfully developed a mathematical model based on the known reaction–diffusion system to simulate their interplay and refined the conceptual biological model. Intriguingly, the expression of both PeMYBx and PeMYB11 were in phase for purple spot formation, even though they showed adverse effects on anthocyanin accumulations. An increase in the self-activation rate of PeMYB11 resulted in the increased size of purple spots, but no effects on spot fusion. Decreased degradation rate of miR858 in the purple regions, led to disruption of the formation of spotted pigmentation patterning and a full-red pigmentation pattern. Significantly, the reduced miR858 level promotes the fusion of large dark purple dots induced by the solo-LTR of HORT1, eventually generating the purple patches. In addition, the spatially heterogeneous insertion of HORT1 caused by the remnant solo-LTR of HORT1 derived from random homologous unequal recombination of HORT1 in individual cells of floral organs could explain the diverse pigmentation patterning of harlequin Phalaenopsis.ConclusionsThis devised model explains how HORT1 and miR858 regulate the formation of the pigmentation patterning and holds great promise for developing efficient and innovative approaches to breeding harlequin Phalaenopsis orchids.

Integrative transcriptomics and metabolomics analysis provide insight into the formation of skin pigmentation diversity in Chinese soft-shelled turtle (Pelodiscus sinensis)

Chinese soft-shelled turtle (Pelodiscus sinensis) is an important freshwater breeding species in East and Southeast Asia. The most external differences among different strains are skin pigmentation and blotches, but the mechanism of their formation is unknown. To investigate the mechanism of skin pigmentation diversity in Chinese soft-shelled turtle, three unique phenotypes (Golden strain, Japanese strain and Qingxi black strain) were selected to observe the chromatophores, and the transcriptome and metabolome were compared. The results showed the presence of melanophores, xanthophores and iridophores in the skin of all three strains. However, there were differences in the composition and organelles of chromatophores. The upregulation of gene asip and elevated accumulation of glutathione and cysteine in Golden strain resulted in the production of pheomelanin, leading to yellow pigmentation in the skin. The upregulation of gene dct and elevated accumulation of indole-5, 6-quinone in Qingxi black strain resulted in the production of eumelanin, which made the skin appear black-brown. Japanese strain produced eumelanin and pheomelanin, however, the presence of melanosomes resulted in skin darkening and appeared dark green pigmentation. The white blotches of Gloden strain and Japanese strains were formed through increased production of iridophores, while the black blotches of Qingxi black strain were formed by inducing migration and apoptosis of melanophores within iridophores. In conclusion, the distinctive characteristics of the skin in three strains resulted from combination of melanin type, abundance of melanosomes and interaction between melanophores and iridophores. These results provided valuable reference for investigating the mechanisms underlying skin pigmentation diversity in Chinese soft-shelled turtle and other vertebrates.

Variation in the Photosynthetic Leaf Pigments of Different Basil (Ocimum spp.) Genotypes under Varying Conditions at the Flowering Stage

Basil is a culinary herb in high demand all year round, either fresh, dried, or frozen. Field basil crops are commercially predominant, while greenhouse crops can cover the demand for fresh basil during the off-season. The leaf aspect of basil has great importance for the food industry, and a great diversity of genotypes has been created. The aim of this research was to conduct a comparative characterization of 12 basil genotypes (green and purple leaf) that present interest for breeding programs from a national germplasm collection. The study examines the accumulation of photosynthetic pigments in basil cultivated in field versus greenhouse conditions as indicators of plant performance and herb quality from the perspective of ensuring fresh plant material all year round. The experimental median indicated that photosynthetic leaf pigments accumulated in higher concentrations in the field relative to the greenhouse conditions, in descending order: β-carotene, lutein, chlorophyll a, and chlorophyll b. The trend was not as consistent for chlorophyll b, since four out of twelve genotypes presented higher levels in the greenhouse than in the field, while the overall values were not much lower in the greenhouse than the field (16.82%). All genotypes accumulated much higher carotenoid contents in field conditions relative to greenhouse conditions (>200%) and could also provide better nutritional advantages given their demonstrated health benefits. The differences in photosynthetic leaf pigments have both nutritional (the carotenoids), shelf-life, and processing relevance (chlorophylls) and serve as quality markers.

Preliminary investigation of potential links between pigmentation variants and opioid analgesic effectiveness in horses during cerebrospinal fluid centesis

BackgroundThe pleiotropic effects of the melanocortin system show promise in overcoming limitations associated with large variations in opioid analgesic effectiveness observed in equine practice. Of particular interest is variation in the melanocortin-1-receptor (MC1R) gene, which dictates pigment type expression through its epistatic interaction with the agouti signalling protein (ASIP) gene. MC1R has previously been implicated in opioid efficacy in other species; however, this relationship is yet to be explored in horses. In this study, analgesic effectiveness was scored (1-3) based on noted response to dura penetration during the performance of cerebrospinal fluid centisis after sedation and tested for association with known genetic regions responsible for pigmentation variation in horses.ResultsThe chestnut phenotype was statistically significant (P < 0.05) in lowering analgesic effectiveness when compared to the bay base coat colour. The 11bp indel in ASIP known to cause the black base coat colour was not significant (P>0.05); however, six single nucleotide polymorphisms (SNPs) within the genomic region encoding the ASIP gene and one within MC1R were identified as being nominally significant (P<0.05) in association with opioid analgesic effectiveness. This included the location of the known e MC1R variant resulting in the chestnut coat colour.ConclusionsThe current study provides promising evidence for important links between pigmentation genes and opioid effectiveness in horses. The application of an easily identifiable phenotype indicating variable sensitivity presents a promising opportunity for accessible precision medicine in the use of analgesics and warrants further investigation.

Diversity, Distribution and Abundance of Phytoplankton from Palghar Coast of Maharashtra

Diversity of phytoplankton and water quality of Dandi creek was studied during September 2009 to September 2010.Physicochemical parameters indicated variations in depth, pH, and temperature. DO, BOD, salinity, nitrite, nitrate, ammonium nitrate, phosphate etc. A total of 59 genera of phytoplankton were observed from Dandi creek system of which 50 genera were diatoms, 7 were dinoflagellates and 2 were other algae. Coscinodisccus was the most abundant genus in Dandi creek. Followed by Ditylum, Biddulphia, Bacillaria, Certatium, Nitzschia, Naviculla, Plurosigma, Rhizosolenia, Thalasiossira and Thalassiothrix. Variations showed in phytoplankton pigments at Dandi creek waters phytoplankton community. Variation of chlorophyll a ranged between 0.47 and 6.87 mg/m3 (av.3.45 mg/m3) and phaeophytin ranged between 0.18 and 2.8 mg/m3 (av.1.04 mg/m3). Concentration of phytoplankton pigments in the creek was fairly high. The chlorophyll a was higher in the outer zone than the interior zone of the creek. In general, phaeophytin level was lower than the chlorophyll a suggesting that the phytoplankton were in good physiological state. Seasonal variation in phytoplankton pigments was marginal. Phytoplankton pigments showed variations in concentration during pre-monsoon, monsoon and post monsoon seasons at 5 different stations of creek.

Distinct genetic origins of eumelanin levels and barring patterns in cichlid fishes.

Pigment patterns are incredibly diverse across vertebrates and are shaped by multiple selective pressures from predator avoidance to mate choice. A common pattern across fishes, but for which we know little about the underlying mechanisms, is repeated melanic vertical bars. To understand the genetic factors that modify the level or pattern of vertical barring, we generated a genetic cross of 322 F2 hybrids between two cichlid species with distinct barring patterns, Aulonocara koningsi and Metriaclima mbenjii. We identify 48 significant quantitative trait loci that underlie a series of seven phenotypes related to the relative pigmentation intensity, and four traits related to patterning of the vertical bars. We find that genomic regions that generate variation in the level of eumelanin produced are largely independent of those that control the spacing of vertical bars. Candidate genes within these intervals include novel genes and those newly-associated with vertical bars, which could affect melanophore survival, fate decisions, pigment biosynthesis, and pigment distribution. Together, this work provides insights into the regulation of pigment diversity, with direct implications for an animal's fitness and the speciation process.

Spectrum-based deep learning framework for dermatological pigment analysis and simulation

Background:Deep learning in dermatology presents promising tools for automated diagnosis but faces challenges, including labor-intensive ground truth preparation and a primary focus on visually identifiable features. Spectrum-based approaches offer professional-level information like pigment distribution maps, but encounter practical limitations such as complex system requirements. Methods:This study introduces a spectrum-based framework for training a deep learning model to generate melanin and hemoglobin distribution maps from skin images. This approach eliminates the need for manually prepared ground truth by synthesizing output maps into skin images for regression analysis. The framework is applied to acquire spectral data, create pigment distribution maps, and simulate pigment variations. Results:Our model generated reflectance spectra and spectral images that accurately reflect pigment absorption properties, outperforming spectral upsampling methods. It produced pigment distribution maps with correlation coefficients of 0.913 for melanin and 0.941 for hemoglobin compared to the VISIA system. Additionally, the model’s simulated images of pigment variations exhibited a proportional correlation with adjustments made to pigment levels. These evaluations are based on pigment absorption properties, the Individual Typology Angle (ITA), and pigment indices. Conclusion:The model produces pigment distribution maps comparable to those from specialized clinical equipment and simulated images with numerically adjusted pigment variations. This approach demonstrates significant promise for developing professional-level diagnostic tools for future clinical applications.