Phytophthora Plurivora Research Articles

Use of Phosphite Preparations to Protect Ash Seedlings Fraxinus excelsior L. against Phytophthora spp. and Hymenoscyphus fraxineus Pathogens

In this study, greenhouse tests were conducted on 240 Fraxinus excelsior seedlings to investigate the simultaneous damage caused by thea pathogenic fungus and oomycetes. The experiment was performed under controlled conditions in the greenhouse of the Institute of Forest Research in Sękocin Stary (Poland). Three species of oomycetes were used for the experiment: Phytophthora plurivora, Phytophthora taxon hungarica, Phytophthora megasperma, and the fungus Hymenoscyphus fraxineus. Inoculations using the fungus were carried out on shoots and in plant pots in which the soil was mixed with the three Phytophthora species mentioned above, both simultaneously and separately, which made it possible to recognize the cumulative effect of the related plant infection. The aim of the study was to investigate the effect of phosphite-containing preparations on the health of common ash under conditions of threat to the roots by Phytophthora spp. and damage to the aerial parts of the plant by the fungus, as well as the possible occurrence of synergistic effects. Two types of protective preparations (Actifos and Phos60 of the nitrogen and potassium forms, respectively) were used. It was found that the inoculation of ash seedlings with the fungus H. fraxineus resulted in plant mortality, while the mixture of Phytophthora did not cause significant damage. It was confirmed that when pathogens coexist, a phenomenon occurs that leads to an acceleration in the development of disease symptoms and, thus, to plant mortality. In vitro tests confirmed the usefulness of phosphite preparations for the protection of ash seedlings.

First report of Phytophthora plurivora in Australia

First report of Phytophthora plurivora in Australia

Silicon modifies leaf nutriome and improves growth of oak seedlings exposed to phosphorus deficiency and Phytophthora plurivora infection.

Beneficial effects of silicon (Si) on plants have primarily been studied in crop species under single stress. Moreover, nutrient acquisition-based responses to combination of biotic and abiotic stresses (a common situation in natural habitats) have rarely been reported, in particular in conjunction with soil amendments with Si. Pedunculate oak (Quercus robur L.), one of the ecologically and economically most important tree species in Europe, is facing a severe decline due to combined stresses, but also problems in assisted regeneration in nurseries. Here, we studied the effect of Si supply on the leaf nutriome, root traits and overall growth of 12-weeks-old oak seedlings exposed to abiotic stress [low phosphorus (P) supply], biotic stress (Phytophthora plurivora root infection), and their combination. The application of Si had the strongest ameliorative effect on growth, root health and root phenome under the most severe stress conditions (i.e., combination of P deficiency and P. plurivora root infection), where it differentially affected the uptake and leaf accumulation in 11 out of 13 analysed nutrients. Silicon supply tended to reverse the pattern of change of some, but not all, leaf nutrients affected by stresses: P, boron (B) and magnesium (Mg) under P deficiency, and P, B and sulphur (S) under pathogen attack, but also nickel (Ni) and molybdenum (Mo) under all three stresses. Surprisingly, Si affected some nutrients that were not changed by a particular stress itself and decreased leaf Mg levels under all the stresses. On the other hand, pathogen attack increased leaf accumulation of Si. This exploratory work presents the complexity of nutrient crosstalk under three stresses, and opens more questions about genetic networks that control plant physiological responses. Practically, we show a potential of Si application to improve P status and root health in oak seedlings, particularly in nurseries.

Pathogenic fungi and oomycetes causing dieback on Fraxinus species in the Mediterranean climate change hotspot region

Environmental changes are occurring on a global scale, but their effects are most pronounced in climate change hotspot zones, such as the Mediterranean basin. Within this area Italy, extending from its southern coasts in the core of the Mediterranean Sea to its northernmost pre-Alpine and Alpine regions, is characterized by a variety of climatic conditions and vegetation types. Surveys conducted in 2018–2022 in forest formations of Central-Northern Italy revealed that the enhanced warming trend and irregular distribution of precipitations are strongly impacting the health of Fraxinus species, with some pathogenic fungi and oomycetes being important contributing factors to the decline of the three main ash species growing there: common ash (Fraxinus excelsior), flowering ash (Fraxinus ornus), and narrow-leaved ash (Fraxinus angustifolia). Isolation from symptomatic plant material collected countrywide under different site conditions and pathogenicity tests revealed a complex phytopathological framework, with several pathogenic species in addition to Hymenoscyphus fraxineus involved with a prominent role in the ash dieback etiology. Key microbial taxa included the fungal and oomycete pathogens Botryosphaeria dothidea, Diplodia fraxini, Diplodia subglobosa, Phytophthora acerina, and Phytophthora plurivora. The disease impact was higher on sites where ash trees grew under environmental stress (i.e., areas characterized by mild dry winters, hot summers with intense and prolonged drought) and exhibited reduced vigor, also as a consequence of anthropogenic interference (i.e., silvicultural management and fires). The identified causative agents are emerging pathogens that thrive under warmer conditions, their impact in the investigated areas being prevalent compared to H. fraxineus, which appears to be restricted on the Italian peninsula to the cooler and wetter valleys of the Alps and Central-Northern Apennines.

Susceptibility of silver birch and black alder to several Phytophthora species isolated from soils in declining broadleaf forests in western Ukraine

AbstractIn declining broadleaf forests in western Ukraine, several Phytophthora species including P. plurivora, P. bilorbang, P. polonica, P. gonapodyides and P. cactorum were recovered using soil baiting assays and identified using morphological and molecular methods. Pathogenicity tests of selected isolates were performed on black alder (Alnus glutinosa (L.) Gaerth.) and silver birch (Betula pendula Roth.) to assess susceptibility of these two tree species to the newly detected Phytophthora species. Phytophthora plurivora, P. bilorbang and P. polonica showed higher pathogenicity in both alder and birch compared to the other tested Phytophthora species.

Phytophthora, Nothophytophthora and Halophytophthora diversity in rivers, streams and riparian alder ecosystems of Central Europe

Waterways are ideal pathways for Phytophthora dispersal and potential introduction to terrestrial ecosystems. While many Phytophthora species from phylogenetic clades 6, 9 and 10 are predominant oomycetes in watercourses due to their adaptation to a lifestyle as saprotrophs and opportunistic pathogens of riparian plants, species from clades 2, 7 and 8 are predominantly soil- or airborne using aquatic habitats as temporal niches for spreading and invading terrestrial sites along the watercourses. In contrast to forest ecosystems, knowledge of Phytophthora diversity in watercourses in Central Europe is limited. Between 2014 and 2019 extensive surveys of streams and rivers were undertaken across Austria, in South Moravia, Czech Republic and Žilina province, Slovakia to unveil the diversity and distribution of Phytophthora and related oomycetes. In addition, in Austria riparian forests of black alder (Alnus glutinosa) and grey alder (A. incana) in lowlands and in the Alps were examined. A variety of Phytophthora species from clades 2, 6, 7, 8, 9 and 10 were isolated, with clade 6 species showing the widest distribution and abundance. Furthermore, interspecific clade 6 hybrids and other oomycetes such as Halophytophthora fluviatilis and undescribed Nothophytophthora spp. were also obtained. In riparian alders, symptoms of Phytophthora infections were associated with species from the P. × alni complex and P. plurivora. Phytophthora plurivora was most common in alder stands whereas P. uniformis was the oomycete species occurring at the highest altitude in alpine riparian areas.

High-Quality Genome of the Tree Pathogen Phytophthora plurivora—A Novel Resource for Epidemiological Research

Phytophthora plurivora can affect a range of ecologically and silviculturally important tree species, including European beech ( Fagus sylvatica), a common late successional tree species native to Europe. Here, we report on the high-quality genome of P. plurivora strain TJ71 (CBS 124093). We sequenced it using Oxford Nanopore MinION and PacBio Sequel II long-read sequencing with 80× coverage, chromatin conformation capture (Hi-C) sequencing with 400× coverage, and DNBSEQ 150-bp paired-end short reads sequencing with 200× coverage. This complex sequencing approach allowed for assembly of the genome at the chromosome level. Specifically, the P. plurivora genome resulted in 18 scaffolds of 47 Mbp total size with 95% completeness of the eukaryotic gene set as implemented in BUSCO. This is a considerable improvement relative to the previous NCBI reference genome of P. plurivora (NMPK00000000.1) with ∼41 Mbp organized in 1,898 scaffolds with 93.8% eukaryotic BUSCO completeness. This high-quality genome provides a valuable resource for further evolutionary, epidemiological, and population genomic studies. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

RNA silencing proteins and small RNAs in oomycete plant pathogens and biocontrol agents.

Oomycetes cause several damaging diseases of plants and animals, and some species also act as biocontrol agents on insects, fungi, and other oomycetes. RNA silencing is increasingly being shown to play a role in the pathogenicity of Phytophthora species, either through trans-boundary movement of small RNAs (sRNAs) or through expression regulation of infection promoting effectors. To gain a wider understanding of RNA silencing in oomycete species with more diverse hosts, we mined genome assemblies for Dicer-like (DCL), Argonaute (AGO), and RNA dependent RNA polymerase (RDRP) proteins from Phytophthora plurivora, Ph. cactorum, Ph. colocasiae, Pythium oligandrum, Py. periplocum, and Lagenidium giganteum. Moreover, we sequenced small RNAs from the mycelium stage in each of these species. Each of the species possessed a single DCL protein, but they differed in the number and sequence of AGOs and RDRPs. SRNAs of 21nt, 25nt, and 26nt were prevalent in all oomycetes analyzed, but the relative abundance and 5' base preference of these classes differed markedly between genera. Most sRNAs mapped to transposons and other repeats, signifying that the major role for RNA silencing in oomycetes is to limit the expansion of these elements. We also found that sRNAs may act to regulate the expression of duplicated genes. Other sRNAs mapped to several gene families, and this number was higher in Pythium spp., suggesting a role of RNA silencing in regulating gene expression. Genes for most effector classes were the source of sRNAs of variable size, but some gene families showed a preference for specific classes of sRNAs, such as 25/26 nt sRNAs targeting RxLR effector genes in Phytophthora species. Novel miRNA-like RNAs (milRNAs) were discovered in all species, and two were predicted to target transcripts for RxLR effectors in Ph. plurivora and Ph. cactorum, indicating a putative role in regulating infection. Moreover, milRNAs from the biocontrol Pythium species had matches in the predicted transcriptome of Phytophthora infestans and Botrytis cinerea, and L. giganteum milRNAs matched candidate genes in the mosquito Aedes aegypti. This suggests that trans-boundary RNA silencing may have a role in the biocontrol action of these oomycetes.

Occurrence of Phytophthora species in riparian stands of black alder (Alnus glutinosa) in Slovakia

AbstractDuring the monitoring period of alder decline phenomenon in Slovakia, indicative symptoms of Phytophthora diseases were observed in riverside stands in Slovakia. The study aimed to test the presence and diversity of Phytophthora species in declining alder stands. The samples were collected from six stands situated by rivers/streams in the central and eastern parts of Slovakia. Phytophthora plurivora and P. cactorum were detected in soil, root and water samples. The most isolated species was P. plurivora. Both Phytophthora species have been recognized in the literature as the perpetrators of black alder dieback together with other species, such as P. alni or P. polonica. To our knowledge, this is the first report of P. plurivora and P. cactorum in riverside stands with the main share of black alder in Slovakia.

Orta Anadolu Bölgesinde çilek ekiliş alanlarında görülen fungal hastalıkların tespiti, yaygın olarak yetiştirilen çeşitlerin önemli patojenlere karşı çeşit reaksiyonlarının belirlenmesi

Strawberry diseases, occurring in Central Anatolia region of Turkey was studied in the years 2013-2016 in the strawberry growing areas of Bartın, Kayseri, Konya, and Zonguldak provinces. Totally 515.5 da strawberry fields in the above mentioned provinces were visited and plants showing disease symptoms were counted and their percentages were determined. Foliage and root diseases were determined by using 383 samples collected from various fields. Seventeen fungal pathogens: namely Alternaria alternata (Fr.) Keissler, Boeremia exigua (Desmazières) Aveskamp, Gruyter & Verkley, Mycosphaerella fragariae (Tul.) Lindau., Colletotrichum acutatum J.H. Simmonds, Colletotrichum gleosporoides (Penz.) Penz., Botrytis cinerea (de Bary) Whetzel, Lasiodiplodia theobromae (Pat.) Griffon & Maubl., Diaporthe actinidae N.F. Sommer & Beraha., Diaporthe eres Nitschke, Didymella americana Saccardo ex Saccardo, Didymella pomorum (Thümen) Aveskamp, Gruyter & Verkley, Diplodia seriata de Notaris, Macrophomina phaseolina (Tassi) Goidanich, Peyronellae prosopidis, Phytophthora cactorum (Lebert & Cohn) J.Schröter, Phytophthora plurivora Jung & Burgess., Phytophthora kelmania were identified. A. alternata, was the most frequently isolated fungus and was obtained from 41.94% of the plant samples while root rot diseases caused by various fungi occurred on 38.13% of the fields. Reactions of twelve strawberry cultivars; (Festival, Kabarla, Sweetann, Alison, Osmanlı, Kara çilek, Tüylü, Sabrina, Rubigem, San Andreas, Albion, Festival, Monterey) were tested against the three most widespread pathogen; A. alternata, M. phaseolina and L. theobromae. With the 86% disease severity, Kabarla was found the most susceptible cv. against A. alternata while Tüylü was the most susceptible cv. against M. phaseolina and L. theobromae. Only one variety, Osmanlı, showed low disease intensity against three of the pathogens.

Oak Decline Caused by Biotic and Abiotic Factors in Central Europe: A Case Study from the Czech Republic

Oak decline presenting symptoms of tracheomycosis have been observed globally over long periods of time. Since the 1990s, oak decline has been considered to be a multifactorial process where abiotic predisposing factors play a significant role. Nevertheless, biotic factors, such as subcortical insects and fungal pathogens, may influence the decline process, as some insect species transmit spores of tracheomycotic pathogens. We investigated biotic agents (subcortical insects, Ophiostoma spp. and Phytophthora spp.) in six declining oak stands located within mesophytic and thermophytic zones in the Czech Republic, where five dry years occurred from 2015 to 2019. The spectrum of insect pests of oak stands was investigated using two methods: reared from logs from each stand and window traps. The presence of Ophiostoma fungi was assessed from cultivated woodblocks; Phytophthora pathogens were isolated from soil samples. In total, 2931 subcortical insect individuals were captured during the 2021 vegetation period. The most species-rich group of the subcortical insect complex involved in oak decline consisted of the families Cerambycidae: Xylotrechus antilope; Curculionidae: Scolytus intricatus, Xyleborus monographus; and Buprestidae: Agrilus biguttatus, A. sulcicollis. The presence of Ophiostoma was detected in all stands with different intensities between tree parts. Several important oak pests were positively correlated with the occurrence of Ophiostoma. On the contrary, from all soil samples, Phytophthora plurivora was found at only one studied oak stand. Based on the results, a new modified model of biotic and abiotic factors involved in the oak decline is proposed.

Irrigation Frequency and Volume has Little Influence on Phytophthora Root Rot in Container-grown Rhododendron

Abstract We evaluated whether reducing irrigation frequency and volume alters the ability of Phytophthora plurivora and P. cinnamomi to cause root rot on rhododendron grown in a noninfested potting medium or media infested with 1 or 100 propagules per gram (ppg) of pathogen. Plants were irrigated to maintain a substrate moisture of >70% container capacity (1.0X), one-half volume of 1.0X (0.5X), or two times the volume of 1.0X at each irrigation event for one week, followed by no irrigation, until soil moisture reached <50% container capacity. Aboveground disease symptoms (chlorosis, stomatal conductance, wilting, and plant death) were evaluated weekly and root rot, pathogen presence, plant biomass, and nutrient uptake were measured at the end of each trial. Both pathogens generally caused mild disease at 1 ppg and severe disease at 100 ppg. Reducing irrigation did little to lessen disease caused by either pathogen once infection had occurred. Instead, severe root infection often led to increased soil moisture and root rot across all irrigation treatments as roots became progressively compromised in their ability to take up water. Results show that reducing irrigation after infection has occurred is unlikely to effectively control root rot. Species used in this study: Phytophthora species (Phytophthora cinnamomi Rands; Phytophthora plurivora T. Jung and T.I. Burgess); rhododendron, Rhododendron catawbiense Michx. ‘Album', ‘Roseum Elegans', and ‘Roseum Pink'.

Significance to the Horticulture Industry

Significance to the Horticulture Industry

Metabolomic and Physiological Changes in Fagus sylvatica Seedlings Infected with Phytophthora plurivora and the A1 and A2 Mating Types of P. ×cambivora

Phytophthora infections are followed by histological alterations, physiological and metabolomic adjustments in the host but very few studies contemplate these changes simultaneously. Fagus sylvatica seedlings were inoculated with A1 and A2 mating types of the heterothallic P. ×cambivora and with the homothallic P. plurivora to identify plant physiological and metabolomic changes accompanying microscope observations of the colonization process one, two and three weeks after inoculation. Phytophthora plurivora-infected plants died at a faster pace than those inoculated with P. ×cambivora and showed higher mortality than P. ×cambivora A1-infected plants. Phytophthora ×cambivora A1 and A2 caused similar progression and total rate of mortality. Most differences in the physiological parameters between inoculated and non-inoculated plants were detected two weeks after inoculation. Alterations in primary and secondary metabolites in roots and leaves were demonstrated for all the inoculated plants two and three weeks after inoculation. The results indicate that P. plurivora is more aggressive to Fagus sylvatica seedlings than both mating types of P. ×cambivora while P. ×cambivora A1 showed a slower infection mode than P. ×cambivora A2 and led to minor plant metabolomic adjustments.

Bioactivity of Chamaecyparis lawsoniana (A. Murray) Parl. and Thuja plicata Donn ex D. Don essential oils on Lymantria dispar (Linnaeus, 1758) (Lepidoptera: Erebidae) larvae and Phytophthora de Bary 1876 root pathogens

We examined essential oils (EOs) of Chamaecyparis lawsoniana and Thuja plicata (Cupressaceae), their antifeedant activity on Lymanthria dispar larvae and their antimicrobial activity. Studies of EOs showed that these two conifer species differed both in content of terpene classes and the major compounds. Total monoterpenes strongly dominated in T. plicata (96.4%), while C. lawsoniana was rich in both mono- and sesquiterpenes (40.8% and 30.3%, respectively) as well as in diterpenes (19.1%). The most dominant compounds of C. lawsoniana EO were: limonene (16.7%), oplopanonyl acetate (14.5%), beyerene (10.1%), and 13-epi-dolabradiene (6.7%). The dominant compound of T. plicata EOs was α-thujone (76.9%), followed by relatively small amounts of β- thujone (5.3%), sabinene (4.5%) and terpinene-4-ol (3.2%). The difference in EO compositions of the conifers was reflected on Lymantria dispar larvae performance. Larvae fed on the leaf discs treated by C. lawsoniana EO had a slight phagostimulatory effect at lower concentration shown by higher relative rate of food consumption and relative growth rate than the larvae in the control group. Contrastingly, leaf discs treated with EO of T. plicata EO had an antifeedant effect and lower relative consumption rate (RCR) and relative growth rate RGR than the larvae in the control group. Both tested EOs influenced substantially the colony growth of the subjected Phytophthora plurivora and P. quercina. Namely, 100% inhibitory effect was recorded at concentration of 0.1% in the case of C. lawsoniana EO, whereas of T. plicata colonies did not grow at 0.5% concentration. The implications of these findings and possibility of using the tested EOs in further experiments in vitro and in vivo are discussed.

Phytophthora plurivora

This datasheet on Phytophthora plurivora covers Identity, Distribution, Hosts/Species Affected, Further Information.

Application of a Low-Cost Electronic Nose to Detect of Forest Tree Pathogens: Fusarium oxysporum and Phytophthora plurivora

The presence of forest tree pathogens may lead to substantial problems and their early detection in the stage of seeds storage or nurseries may be critical for the choice of appropriate management strategy. A new construction of a low-cost electronic nose was tested on the samples of pathogenic fungi and oomycetes of <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">Fusarium oxysporum</i> and <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">Phytopthora plurivora</i> . The electronic nose uses Figaro Inc. TGS series sensors with applied heater voltage modulation. Such a mode of electronic nose operation may be more appropriate for application for constant monitoring of seeds storage, when we compare it to the the method applying modulation of the gas concentration. A rectangular shape of the sensors’ heater voltage modulation pattern, with a shallow drop of the heater voltage from the nominal voltage, was proposed. Data visualization using the principal component analysis method and the random forest machine learning technique used to build classification models. The classification accuracy of 97% was obtained by a fusion of data collected by TGS 2610 and TGS 2602 sensors.

Evaluation of growth response of phytopathogens Alternaria alternata, Diaporthe nobilis and Phytophthora plurivora to inhibitory potential of three essential oils of Monarda didyma genotypes

Evaluation of growth response of phytopathogens Alternaria alternata, Diaporthe nobilis and Phytophthora plurivora to inhibitory potential of three essential oils of Monarda didyma genotypes

Optimizing Inoculum Production Methods for Infesting Soil with Phytophthora Species.

Inoculum production is an important part of conducting research with soilborne Phytophthora species. One common method is to incubate Phytophthora cultures in nutrient-amended vermiculite. However, inoculum levels often vary among batches of inoculum, even when production methods remain the same, and incubation typically takes ≥6 weeks, increasing risks for delayed experiments if the resulting inoculum level is too low. A more reliable and rapid method is needed for future studies. Experiments were conducted to determine inoculum levels of Phytophthora cinnamomi and Phytophthora plurivora after incubation in V8 juice-amended vermiculite (standard method); evaluate how inoculum viability was affected by air-drying; develop a modified method that takes less time to produce a vermiculite-based inoculum; and evaluate the effect of storage on inoculum viability. Results showed that the standard method produced inoculum levels from 716 to 1,808 colony forming units (CFUs)/g and that drying to <78% moisture content significantly reduced viability. The modified method used 2-week-old Phytophthora cultures to infest vermiculite at 80% moisture content and produced inoculum levels from 214 to 525 CFU/g. Storage for >1 day generally reduced inoculum viability. Although inoculum levels from the modified method were lower than the standard method, inoculum levels for each isolate were more consistent between trials, and the modified method was 6 to 8 weeks faster. Production with the modified method can also be easily scaled up by infesting a greater volume of vermiculite with additional cultures of Phytophthora. These results are important because they help explain variability in soilborne Phytophthora inoculum production and storage and provide a new method for producing inoculum more quickly.

Electronic Nose Differentiation between Quercus robur Acorns Infected by Pathogenic Oomycetes Phytophthora plurivora and Pythium intermedium.

Identification of the presence of pathogenic oomycetes in infected plant material proved possible using an electronic nose, giving hope for a tool to assist nurseries and quarantine services. Previously, species of Phytophthora plurivora and Pythium intermedium have been successfully distinguished in germinated acorns of English oak Quercus robur L. Chemical compound analyses performed by HS-SPME/GC-MS (Headspace Solid-Phase Microextraction/Gas Chromatography–Mass Spectrometry) revealed the presence of volatile antifungal molecules produced by oak seedlings belonging to terpenes and alkanes. Compounds characteristic only of Phytophthora plurivora or Pythium intermedium were also found. Methylcarveol occurred when germinated acorns were infected with Pythium, while neophytadiene (isomer 2 and 3) occurred only when infected with Phytophthora. Moreover, isopentanol was found in acorns infected with Phytophthora, while in control, isopentyl vinyl ether was not observed anywhere else. Among the numerous volatile compounds, isopentanol only occurred in acorns infected with Phytophthora and methylcarveol in acorns infected with Pythium.