Phylogenetic Community Structure Research Articles

Assessing how metal reef restoration structures shape the functional and taxonomic profile of coral-associated bacterial communities

Significant threats to the long-term persistence of coral reefs have accelerated the adoption of coral propagation and out-planting approaches. However, how materials commonly used for propagation structures could potentially affect coral-associated bacterial communities remains untested. Here, we examined the impact of metal propagation structures on coral-associated bacterial communities. Fragments of the coral species Acropora millepora were grown on aluminium, sand/epoxy-coated steel (Reef Stars), and uncoated steel (rebar) structures. After 6 months, the functional and taxonomic profiles of coral-associated bacterial communities of propagated corals and reef colonies were characterised using amplicon (16S rRNA gene) and shotgun metagenomic sequencing. No differences in the phylogenetic structure or functional profile of coral-associated bacterial communities were observed between propagated corals and reef colonies. However, specific genes and pathways (e.g., lipid, nucleotide, and carbohydrate metabolism) were overrepresented in corals grown on different materials, and different taxa were indicative of the materials. These findings indicate that coral propagation on different materials may lead to differences in the individual bacterial taxa and functional potential of coral-associated bacterial communities, but how these contribute to changed holobiont fitness presents a key question to be addressed.

Environment and management jointly shape the spatial patterns of plant species diversity of moist grasslands in the mountains of Northeastern Yunnan

Grasslands account for about a quarter of the Earth’s land area and are one of the major terrestrial ecosystems, with significant ecological and economic value. The influence of environmental factors and management types on grassland biodiversity has garnered considerable attention. This study investigated how patterns of species richness are influenced by geographical distance, environmental gradients, and management type in the grasslands of northeastern Yunnan, China. We used structural equation modeling to disentangle the impacts of environment and management on phylogenetic community structure, and partial Mantel tests to estimate the roles of dispersal limitation and environmental filtering on taxonomic and phylogenetic beta diversity of three types of grasslands. Our results show that taxonomic alpha diversity increased in grazed grasslands and decreased in mowed grasslands, compared with protected grasslands. However, the phylogenetic structure of both grazed and mowed grassland communities was clustered, whereas that of protected communities was random. Moreover, both grazing and mowing significantly reduced the taxonomic and phylogenetic beta diversity of grasslands, with the lowest values observed in mowed grasslands. Both taxonomic and phylogenetic beta diversity were dominated by species turnover under different management types. The taxonomic and phylogenetic beta diversities of protected and grazed grasslands were simultaneously affected by environmental filtering and dispersal limitation, with the later playing a stronger role. In addition, mowing and related management measures had a stronger filtering effect on grassland community structure, as reflected by changes in community composition.

Reproducible responses of geochemical and microbial successional patterns in the subsurface to carbon source amendment

Carbon amendments designed to remediate environmental contamination lead to substantial perturbations when injected into the subsurface. For the remediation of uranium contamination, carbon amendments promote reducing conditions to allow microorganisms to reduce uranium to an insoluble, less mobile state. However, the reproducibility of these amendments and underlying microbial community assembly mechanisms have rarely been investigated in the field. In this study, two injections of emulsified vegetable oil were performed in 2009 and 2017 to immobilize uranium in the groundwater at Oak Ridge, TN, USA. Our objectives were to determine whether and how the injections resulted in similar abiotic and biotic responses and their underlying community assembly mechanisms. Both injections caused similar geochemical and microbial succession. Uranium, nitrate, and sulfate concentrations in the groundwater dropped following the injection, and specific microbial taxa responded at roughly the same time points in both injections, including Geobacter, Desulfovibrio, and members of the phylum Comamonadaceae, all of which are well established in uranium, nitrate, and sulfate reduction. Both injections induced a transition from relatively stochastic to more deterministic assembly of microbial taxonomic and phylogenetic community structures based on 16S rRNA gene analysis. We conclude that geochemical and microbial successions after biostimulation are reproducible, likely owing to the selection of similar phylogenetic groups in response to EVO injection.

Seasonal and habitat dependence of plant species, functional and phylogenetic diversity in agricultural landscapes

The biodiversity of agricultural landscapes is under significant threat, while non-agricultural habitats within these landscapes play a crucial role in biodiversity conservation. There has been limited investigation into how plant species, functional and phylogenetic diversity varies across different seasons and habitats in agricultural landscapes. Thus, we carried out a survey of the plant communities in non-agricultural habitats in China's lower Yellow River plain. We investigated the diversity features of plant functionality, phylogeny, and plant species. We compared differences in plant community structure using non-metric multidimensional scaling analysis and tested phylogenetic signal using phylogenetic methods. Our analysis of plant community and diversity characteristics revealed significant differences in plant community structure between seasons and habitats, with the season having a more significant impact. The levels of plant species, functional, and phylogenetic diversity followed a seasonal pattern, with spring seeing the highest values and autumn seeing the lowest. Woodland and hedgerow habitats had the highest levels of diversity, while field roads had the lowest. The community phylogenetic structure of non-agricultural habitats was relatively concentrated and mainly influenced by human interference and environmental filtering. These findings offer scientific support for the preservation of ecosystem services and biodiversity in agricultural landscapes.

Do phylogenetic community metrics reveal the South African quartz fields as terrestrial-habitat islands?

The quartz fields of the Greater Cape Floristic Region (GCFR) are arid and island-like special habitats, hosting ~142 habitat-specialized plant species, of which 81 % are local endemics, characterized by a rapid turnover of species between and among sites. We use several phylogenetic community metrics: (1) to examine species diversity and phylogenetic structure within and among quartz fields; (2) to investigate whether quartz field specialists are evolutionarily drawn from local species pools, whereas the alternative hypothesis posits that there is no significant evolutionary connection between quartz field specialists and the local species pools; and (3) to determine whether there is an association between certain traits and the presence of species in quartz fields. We sampled and developed dated phylogenies for six species-rich angiosperm families (Aizoaceae, Asteraceae, Crassulaceae, Cyperaceae, Fabaceae and Santalaceae) represented in the quartz field floras of southern Africa. Specifically, we focused on the flora of three quartz field regions in South Africa (Knersvlakte, Little Karoo and Overberg) and their surrounding species pools to address our research questions by scoring traits associated with harsh environments. We found that the Overberg and Little Karoo had the highest level of species overlap for families Aizoaceae and Fabaceae, whereas the Knersvlakte and the Overberg had the highest species overlap for families Asteraceae, Crassulaceae and Santalaceae. Although our phylogenetic community structure and trait analyses showed no clear patterns, relatively low pairwise phylogenetic distances between specialists and their local species pools for Aizoaceae suggest that quartz species could be drawn evolutionarily from their surrounding areas. We also found that families Aizoaceae and Crassulaceae in Knersvlakte and Little Karoo were phylogenetically even. Despite their proximity to one another within the GCFR, the studied areas differ in their species pools and the phylogenetic structure of their specialists. Our work provides further justification for increased conservation focus on these unique habitats under future scenarios of global change.

Elevational patterns of fish functional and phylogenetic community structure in a monsoon climate river basin

AbstractAimUnderstanding the patterns and drivers of biodiversity across space and time is commonly based on species diversity, which may ignore species' functional role and evolutionary history and result in an incomplete understanding of community assembly. It is suggested that integrating species, functional, and phylogenetic diversity could provide a more holistic assessment of community assembly in natural ecosystems. This study aimed to explore the elevational patterns and environmental drivers of multiple facets of fish diversity and community structure in a subtropical river during the wet and dry seasons.LocationThe Chishui River basin, China.MethodsWe investigated the responses of fish species richness, functional richness, and phylogenetic diversity to elevation in different seasons. Moreover, we compared functional dispersion and mean pairwise distance with those obtained from null models to infer assembly mechanisms shaping community structure. Additionally, we examined the environmental drivers (e.g. water chemistry, temperature, and river size) of fish diversity and community structure.ResultsFish species richness, functional richness, and phylogenetic diversity showed a negative relationship with elevation in the Chishui River basin. Fish communities tended to be on average functionally random but phylogenetically clustered. Furthermore, phylogenetic structure exhibited a decreasing pattern along the elevational gradient. Despite no significant seasonal changes for fish diversity (except for phylogenetic diversity), fish communities became more phylogenetically overdispersed and clustered at low and high elevations in the dry season. Additionally, the responses of fish diversity and community structure to environmental variables were not synchronous.ConclusionsAt the basin scale, environmental filtering was prevalent in shaping fish phylogenetic structure, whereas stochasticity was likely more important for functional structure. Moreover, the ecological mechanisms shaping individual fish communities switched from limiting similarity to environmental filtering as elevation increased, and the underlying forces at two ends of the elevational gradient became more prominent in the dry season.

Antibiotic resistance profiles of gut microbiota across various primate species in Guangxi.

Understanding the gut microbiota and antibiotic resistance gene (ARG) profiles in non-human primates (NHPs) is crucial for evaluating their potential impact on human health and the environment. In this study, we performed metagenomic analysis of 203 primate fecal samples, including nine NHP species and humans, to comprehensively characterize their gut microbiota and ARGs. Our study reveals the prevailing phyla in primates as Firmicutes, Bacteroidetes, Euryarchaeota, and Proteobacteria. The captive NHPs exhibited higher ARG abundance compared to their wild counterparts, with tetracycline and beta-lactam resistance genes prevailing. Notably, ARG subtypes in Trachypithecus leucocephalus (T. leucocephalus) residing in karst limestone habitats displayed a more dispersed distribution compared to other species. Interestingly, ARG profiles of NHPs clustered based on geographic location and captivity status. Co-occurrence network analysis revealed intricate correlations between ARG subtypes and bacterial taxa. Procrustes analysis unveiled a significant correlation between ARGs and microbial phylogenetic community structure. Taxonomic composition analysis further highlighted differences in microbial abundance among NHPs and humans. Our study underscores the impact of lifestyle and geographical location on NHP gut microbiota and ARGs, providing essential insights into the potential risks posed by NHPs to antibiotic resistance dissemination. This comprehensive analysis enhances our understanding of the interplay between NHPs and the gut resistome, offering a critical reference for future research on antibiotic resistance and host-microbe interactions.

Non‐linear thresholds in the effect of area on three dimensions of diversity of herpetofauna in the West Indies

AbstractAimThe small‐island effect (SIE) describes an anomalous feature of the species–area relationship (SAR) on smaller compared to larger islands. However, previous studies on SIEs mainly focused on taxonomic diversity and overlooked phylogenetic and functional diversity. In this study, we explored SIEs in three dimensions of diversity. We expect to see the non‐linear thresholds in the effect of area on three dimensions of diversity as well as on community structures, because the dominant assembly processes vary across spatial scales.LocationThe West Indies.TaxonHerpetofauna.MethodsWe derived data on the presence/absence of 199 amphibian species on 163 islands and 614 reptile species on 748 islands in the West Indies. We built a species‐level phylogenetic tree and a species‐level functional tree to estimate six taxonomic, phylogenetic and functional diversity indices. Four community metrics on behalf of the phylogenetic and functional community structure of each island were calculated using a null modelling framework and was quantified using the standardized effect size (SES). We explored the non‐linear thresholds in the effect of area for each of the diversity indices and SES values of community metrics by comparing six piecewise regression models with a linear regression model and a null model.ResultsWe found evidence of SIEs in four diversity indices representing all three dimensions of diversity. Besides, area thresholds were also found in the phylogenetic and functional community structure for both amphibians and reptiles. Random extinction, competitive exclusion and adaptive radiation are the dominant processes structuring reptile communities on small, intermediate and large islands respectively.Main ConclusionsTo conduct a comprehensive biodiversity conservation plan concerning taxonomic, phylogenetic and functional diversity, we suggest it is necessary to explore the SIEs in various diversity indices representing all three dimensions of diversity and apply the lowest threshold value to make management strategies.

Environmental filtering along a bathymetric gradient: A metabarcoding meta-analysis of free-living nematodes.

Identifying and understanding patterns of biological diversity is crucial at a time when even the most remote and pristine marine ecosystems are threatened by resource exploitation such as deep-seabed mining. Metabarcoding provides the means through which one can perform comprehensive investigations of diversity by examining entire assemblages simultaneously. Nematodes commonly represent the most abundant infaunal metazoan group in marine soft sediments. In this meta-analysis, we compiled all publicly available metabarcoding datasets targeting the 18S rRNA v1-v2 region from sediment samples to conduct a global-scale examination of nematode amplicon sequence variant (ASV) alpha diversity patterns and phylogenetic community structure at different depths and habitats. We found that nematode ASV richness followed a parabolic trend, increasing from the intertidal to the shelf, reaching a maximum in the bathyal and decreasing in the abyssal zone. No depth- or habitat-specific assemblages were identified as a large fraction of genera were shared. Contrastingly, the vast majority of ASVs were unique to each habitat and/or depth zone; genetic diversity was thus highly localized. Overwhelmingly, nematode ASVs in all habitats exhibited phylogenetic clustering, pointing to environmental filtering as the primary force defining community assembly rather than competitive interactions. This finding stresses the importance of habitat preservation for the maintenance of marine nematode diversity.

Assessing riverine fish community diversity and stability by eDNA metabarcoding

Monitoring and evaluating river ecosystems are of paramount importance in addressing ecological and environmental challenges. While eDNA (environmental deoxyribonucleic acid)-based method has emerged as a valuable tool for understanding these issues, its application in assessing phylogenetic diversity, community stability, and the identification of key species within river systems has been limited. In this study, we conducted eDNA metabarcoding to assess fish community phylogenetic diversity, species composition, assembly variations, and their relationship with hydrologic characteristics. We also explored ecological stability and the roles of key species in a river system comprising a mainstem (MS) and a tributary (TB) with distinct hydrologic features. Our findings uncovered previously unknown endemic fish species diversity, exemplified by the discovery of Triplophysa. We identified disparities in diversity, community composition, and assembly between the MS and TB. Furthermore, we established significant associations between water-level variations, water flow, and changes in community composition. Triplophysa, with its high diversity, played a pivotal role in the ecological network, contributing significantly to community stability. The loss of Triplophysa increased fragility in co-occurrence patterns. Comparing the ecological network of fish communities between the MS and TB, we found that the MS displayed greater robustness and lower vulnerability, with increased species competition likely promoting network stability. Overall, this study highlights the potential of integrating eDNA metabarcoding data for monitoring phylogenetic diversity, community structure, and variations in stability within fish communities.

Seasonal Variations in Plant Species Diversity and Phylogenetic Diversity in Abandoned Farmland of China’s Huang–Huai Plain

Amidst urbanization and industrialization in China, abandoned farmland plays a crucial role in safeguarding plant diversity within agricultural landscapes. This study aimed to examine the patterns of seasonal variation in plant diversity within abandoned farmland habitats in the Huang–Huai Plain region. Nonparametric tests were employed to analyze plant species diversity and phylogenetic diversity across seasons. Redundancy analysis and linear regression were conducted to examine the associations between plant species composition, species diversity, phylogenetic diversity, and soil environmental factors. Our results showed that plant species diversity, richness, and phylogenetic diversity were highest in spring, followed by summer, and lowest in autumn. The phylogenetic structure of plant communities demonstrated a tendency to diverge in spring, become random in summer, and cluster in autumn. Soil available potassium and soil organic matter emerged as important factors influencing plant species composition. The content of soil organic matter and ammonium nitrogen level exhibited a significantly positive correlation with the species diversity and phylogenetic diversity of plants. This study underscores the significance of considering seasonal and temporal scales when investigating plant diversity and provides a theoretical basis for biodiversity conservation in agricultural landscapes.

Mechanisms for the construction of plant communities in the Gurbantunggut Desert, China

Analysis of the phylogenetic structure of a community based on the phylogenetic relationships among species in the community can reflect the ecological process of community composition and determine the mechanism of plant community construction. In this study, we analyzed the characteristics of the phylogenetic structure and diversity of plant communities in the Gurbantunggut Desert and their interactions with soil factors and explored the mechanisms of species maintenance in the communities. The results showed that the ecological traits of plants were conserved, habitat filtering was the primary process affecting plant communities, and the diversity of phylogeny was ranked as fixed dunes > semifixed dunes > mobile dunes. At different slope positions within the dune, there is greater phylogenetic diversity at the bottom and lower slope, and habitat filtering dominates community construction, with the dominant role of habitat filtering in the community diminishing as the slope position rises. The phylogenetic diversity of plant communities of different life types is ranked as short-lived plants > small trees and shrubs > annual and perennial herbs. On the bottom and lower slopes, short-lived plants and annual and perennial herbaceous communities are mainly influenced by habitat filtering. Habitat filterability decreased with increasing slope position. On the upper slopes and at the top, competitive exclusion effects between small trees and shrubs dominated. Our analysis shows that soil water content and organic carbon affect phylogenetic diversity mainly by influencing community species richness and that the interaction between soil water content, grain size and plant diversity leads to clustering of species with similar soil preferences, which in turn affects the phylogenetic structure of the community. In addition, the change from habitat filtering to intraspecific competition in plant community construction from the bottom to the top of the slope is mainly influenced by short-lived plant communities, and this type of plant needs to be given priority consideration in the conservation and restoration of desert plant communities.

Seasonal and spatial dynamics of phylogenetic structure of fish communities in coastal waters

Understanding community assembly has long attracted the attention of ecologists. There are a lot of studies on how community assembly mechanisms work through phylogenetic analysis. Nevertheless, phylogenetic structures have generally been assumed to be stable over time in most studies, and little attention has been paid to seasonal shifts in phylogenetic structure, which is important to mobile animals. In this study, phylogenetic distance was measured as the mean pairwise distance (MPD) and as mean nearest taxon distance (MNTD). The phylogenetic structures of fish communities in different regions, subregions and at sampling stations were examined using the standardized effect sizes of MPD and MNTD (SES.MPD and SES.MNTD) under null model independent swap over four seasons in the coastal waters of Shandong Province, China. Generalized additive model (GAM) was used to detect which environmental factors have an important impact on phylogenetic structure indices at each sampling station. The fish communities were phylogenetically clustered in most seasons in the whole survey waters, indicating environmental filtering tended to shape the whole fish assemblage. Two phylogenetic indices indicated that the phylogenetic structure (phylogenetic over-dispersion or phylogenetic clustering) was inconsistent on the different regions and subregions. For fish assemblages at each sampling station, the phylogenetic structure of fish communities presented patchy distribution patterns in different seasons. GAM analysis showed that phylogenetic structure responded differently to different environmental factors over four seasons, and the change in phylogenetic structure indices was significantly associated with environmental factors, especially in autumn and winter. SES.MPD can better respond to environmental changes than SES.MNTD. Spatial factors (longitude and latitude) were important factors influencing fish community assembly, indicating that fish communities at offshore stations with low latitude exhibit a relatively high degree of phylogenetic overdispersion. It was difficult to draw consistent conclusions about seasonal changes in phylogenetic structure of fish communities on different temporal and spatial scales. It is possible that seasonal variations and spatial scales in assembly mechanisms contribute to maintaining marine fish diversity in temperate waters, resulting in different phylogenetic structures in fish community.

Distinct Community Assembly Mechanisms of Different Growth Stages in a Warm Temperate Forest

Community phylogenetic structure and diversity analysis are useful complements to species-centric approaches in biodiversity studies by providing new insights into the processes that drive community assembly. In this study, we aimed to understand the differences in the relative importance of abiotic filtering, biotic interactions, and dispersal limitation on community assembly of trees at different vegetation growth stages. We also examined the influence of geographical distance, elevation, terrain, and soil. Thus, we examined the phylogenetic structures and β-diversities of saplings and adults along different abiotic gradients. The results of the net relatedness index (NRI) showed that, instead of being random, the phylogenetic structure of saplings tended to be convergent, whereas that of adults tended to be divergent. This result implies that the relative forces of abiotic filtering and biotic interactions change throughout vegetation growth. The results of generalized dissimilarity modelling (GDM) showed that dispersal limitation (geographical distance) and abiotic filtering influenced the community assembly of both adults and saplings. This result confirmed our hypothesis that both deterministic and stochastic processes were prevalent. The explanatory rates of geographic distance and environmental factor distance to phylogenetic β-diversity were quite different between adults and saplings, which meant that the relative force of dispersal limitation and abiotic filtering had also changed.

Changes in phylogenetic structure and species composition of woody plant communities across an elevational gradient in the southern Taihang Mountains, China

Changes in phylogenetic structure and species composition of woody plant communities across an elevational gradient in the southern Taihang Mountains, China

Historical and contemporary processes drive global phylogenetic structure across geographical scales: Insights from bat communities

AbstractAimPatterns of evolutionary relatedness among co‐occurring species are driven by scale‐dependent contemporary and historical processes. Yet, we still lack a detailed understanding of how these drivers impact the phylogenetic structure of biological communities. Here, we focused on bats (one of the most species‐rich and vagile groups of mammals) and tested the predictions of three general biogeographical hypotheses that are particularly relevant to understanding how palaeoclimatic stability, local diversification rates and geographical scales shaped their present‐day phylogenetic community structure.LocationWorld‐wide, across restrictive geographical extents: global, east–west hemispheres, biogeographical realms, tectonic plates, biomes and ecoregions.Time periodLast Glacial Maximum (~22,000 years ago) to the present.Major taxa studiedBats (Chiroptera).MethodsWe estimated bat phylogenetic community structure across restrictive geographical extents and modelled it as a function of palaeoclimatic stability andin situnet diversification rates.ResultsLimiting geographical extents from larger to smaller scales greatly changed the phylogenetic structure of bat communities. The magnitude of these effects is less noticeable in the western hemisphere, where frequent among‐realm biota interchange could have been maintained through the adaptive traits of bats. Bat communities with high phylogenetic relatedness are generally more common in regions that have changed less in climate since the Last Glacial Maximum, supporting the expectation that stable climates allow for increased phylogenetic clustering. Finally, increasedin situnet diversification rates are associated with greater phylogenetic clustering in bat communities.Main conclusionsWe show that the world‐wide phylogenetic structure of bat assemblages varies as a function of geographical extents, dispersal barriers, palaeoclimatic stability andin situdiversification. The integrative framework used in our study, which can be applied to other taxonomic groups, has not only proved useful to explain the evolutionary dynamics of community assembly, but could also help to tackle questions related to scale dependence in community ecology and biogeography.

Seasonal variability of nektonic community structure and phylogenetic diversity in Weizhou Island, the Beibu Gulf

The favorable natural conditions and variety of habitats in the Beibu Gulf provide a basis for harboring a high diversity of marine organisms. Sustainable coastal ecosystem management can be benefited from a comprehensive assessment of species diversity. In this study, we analyzed the seasonal changes in nektonic phylogenetic and community structures in the waters of Weizhou Island in the northern Beibu Gulf. The results showed that both the nektonic phylogenetic diversity and community structure in the northern Beibu Gulf exhibited strong seasonal differences between spring and autumn. The catch density was 291.9 kg per km2 in spring and 1081.1 kg per km2 in autumn. Phylogenetic diversity of nektonic communities obviously increased from spring to autumn, while phylogenetic patterns changed from clustering to overdispersion. The seasonal patterns of nektonic communities were mainly related to the different fishing intensities in spring and autumn. Summer fishing intensity in the Beibu Gulf was effectively controlled by a mid-summer fishing moratorium, during which nektonic diversity and fish stocks rapidly recovered from the larval pool. Our study revealed that fishing intensity had a greater impact on nektonic communities at smaller spatial scales, and even exceeded the effects of environmental factors.

Soil factors rather than stand age drive tree phylogenetic diversity along Amazon Forest succession

Understanding the phylogenetic diversity and structure of woody communities can explain how deterministic or stochastic processes drive a forest community assembly. This study assessed the tree community's phylogenetic diversity and structure during secondary succession after shifting cultivation (SC) in the Northern Amazon Forest. We hypothesized that soil-mediated filtering, rather than habitat filtering based on stand age and neutrality-based stochastic processes, determines phylogenetic diversity and structure of woody community along Amazon Forest succession after SC. We used forest inventory data from 45 plots across three sites representing second-growth forests (SG) having stand ages after shifting cultivation (e.g., 5, 10, 15, and 20 years old) and an old-growth reference forest (> 100 years old, OG). We tested different linear mixed-effects models to determine the main effects of soil-mediated filtering (i.e., nutrients and soil texture) and stand age on phylogenetic metrics. Phylogenetic diversity (PD) showed a significant difference between SG and OG: the highest PD was found in OG, whereas the lowest PD was found during the initial successional stage. We found a trend of phylogenetic structure promoted by soil attributes; the variability of soil texture mainly explained most of the variation of phylogenetic diversity and structure. Stand age did not demonstrate a significant influence on phylogenetic metrics across any of the tested models. Higher soil fertility may favor the growth of species from multiple distant clades, increasing phylogenetic diversity and reducing phylogenetic clustering. However, SC may affect the fertility content in silt soils of OG and generate soils with a high proportion of sand and low fertility in SG. Thus, our study demonstrates that soil-mediated abiotic filtering shapes the phylogenetic structure and diversity of tree communities along Amazon forest succession due to deterministic processes rather than stand age and neutrality-based stochastic processes.

Compositional and phylogenetic beta diversity reveal different patterns of aquatic plant assemblages in lakes along the Changjiang River

Many articles have examined the aquatic flora in lakes along the Changjiang River over the past four decades. However, studies on taxonomic and phylogenetic alpha and beta diversity of aquatic plants along the Changjiang River are lacking. In order to clarify the distribution pattern of aquatic plants in lakes of the Changjiang River, we comprehensively analyzed the phylogenetic structure, compositional beta diversity (CBD), and phylogenetic beta diversity (PBD) of their aquatic plant assemblages. We found strong regional differences in phylogenetic community structures with significant differences in the net relatedness index and nearest taxon index values at subregional scales. Interestingly, similarity clustering based on compositional beta similarity showed that the lakes in the upper Changjiang River and upper Pearl River were clustered into a branch, and then connected with the lakes in the lower Changjiang River. However, similarity clustering based on phylogenetic beta similarity clustered the lakes in the upper and lower Changjiang River together into a branch, before connecting them with the lakes in the upper Pearl River. Additionally, we found significantly higher taxonomic dissimilarity than phylogenetic dissimilarity overall, as well as in individual subregions of the Changjiang River. These results suggested that the uplift of the Qinghai-Tibet Plateau and river capture played important roles in the aquatic plant assemblages of lakes resulting in patterns of geographic endemism at regional scales.

The diversity of resident passerine bird in the East Yunnan-Kweichow Plateau is closely related to plant species richness, vertical altitude difference and habitat area.

East Yunnan-Kweichow Plateau is rich in biodiversity in China. Complex geographical and climatic conditions and rich bird resources made this area an ideal system for studying the spatial distribution mechanism and influencing factors of birds, which were still unknown. Bird community data from 37 sites in this region were collected, including 505 bird species and 164 species of resident passerine bird, were extracted for analysis. The taxonomic diversity, phylogenetic diversity, functional diversity (FD), and community structure index were calculated. Ordinary least square (OLS), spatial autoregressive models (SAR), and structural equation model (SEM) were used to explore the relationship between bird diversity index and environmental factors which were used to describe the habitat conditions of birds. Results indicated that species richness (SR), phylogenetic diversity (PD), and FD have similar distribution patterns and are mainly affected by vascular plant species richness, habitat area, and vertical altitude difference. The phylogenetic and functional structure of bird community changed in both longitude and latitude direction, and the phylogenetic structure of community was dispersed in the west and clustered in the east, significantly related to habitat area, and vertical altitude difference, the functional structure was dispersed in all sites, significantly related to average annual precipitation. The community in the west and south of the East Yunnan-Kweichow Plateau is mainly driven by interspecific competitive, while the process in the east and north is mainly driven by environmental filtration. Distribution pattern of bird diversity was caused by the comprehensive action of various habitat factors which were mainly related to food availability and habitat heterogeneity. For maintaining the living space of birds, the protection of urban parks, wetland parks, campuses, and other urban green spaces is as important as national and provincial nature reserves. Revealing the construction mechanism and main influencing factors of bird communities in different areas is conducive to targeted protection work.