Phylogenetic Dissimilarity Research Articles

Climate change alters the future of natural floristic regions of deep evolutionary origins

Biogeographic regions reflect the organization of biotas over long evolutionary timescales but face alterations from recent anthropogenic climate change. Here, we model species distributions for 189,269 vascular plant species of the world under present and future climates and use this data to generate biogeographic regions based on phylogenetic dissimilarity. Our analysis reveals declines in phylogenetic beta diversity for years 2040 to 2100, leading to a future homogenization of biogeographic regions. While some biogeographic boundaries will persist, climate change will alter boundaries separating biogeographic realms. Such boundary alterations will be determined by altitude variation, heterogeneity of temperature seasonality, and past climate velocity. Our findings suggest that human activities may now surpass the geological forces that shaped floristic regions over millions of years, calling for the mitigation of climate impacts to meet international biodiversity targets.

Meeting Linnean, Wallacean, and Darwinian shortfalls in global biodiversity hotspots: A model study from the Indian Himalayan Region

AbstractDespite recent efforts to make large‐scale biodiversity datasets available, several data shortfalls still exist that preclude our progress in achieving global conservation and sustainability goals. In this study, we present a comprehensive native tree dataset (1689 species) from the Indian Himalayan Region (IHR)—home to two global biodiversity hotspots—assembled from an extensive data synthesis. Based on this database, we investigate the geographic patterns and drivers of α‐ and β‐taxonomic and phylogenetic diversity of the native trees among 13 different provinces of IHR. Our results revealed a considerable variation in the α‐ and β‐taxonomic and phylogenetic diversity among the provinces of IHR, with the highest values in eastern provinces. We found phylogenetic clustering mostly in the western provinces, and phylogenetic dispersion in the eastern provinces. We found a positive correlation between the taxonomic and phylogenetic dissimilarity across the IHR. Also, the different sets of explanatory variables explained the variation of tree species richness, standardized effect size of phylogenetic diversity, net relatedness index, and nearest taxon index, with maximum contribution by temperature seasonality (Bio4). Furthermore, temperature‐related climatic distance individually explained most of the variation in the taxonomic and phylogenetic dissimilarity between the provinces of IHR. Overall, our findings unveil the patterns of taxonomic, biogeographic, and phylogenetic dimensions of tree flora in the IHR, which in turn can help in formulating scientific data‐based regional policy and conservation strategies. Looking forward, we presented a model study for bridging the Linnean, Wallacean, and Darwinian shortfalls in the globally data‐deficient biodiversity‐rich regions.

Water level regime variation is a crucial driver for taxonomic, functional, and phylogenetic diversity in seasonally flooded tropical forests

Floodplains contribute significantly to terrestrial ecosystem service provision but are also among the most vulnerable and degraded ecosystems worldwide. Heterogeneity in floodplain properties arises from variations in river-specific flood regimes, watershed characteristics, and valley morphology, influencing seasonally flooded forests' taxonomic, functional, and phylogenetic diversity. This study addresses persisting knowledge gaps in floodplain ecology, focusing on the seasonally dry tropics. We explore the relationships between flood regime, environmental conditions, vegetation composition, functional and phylogenetic diversity, and the impact of environmental variables on above-ground biomass (AGB) and ecological strategies. The study spans six rivers in southeastern Brazil's main river basins: Rio Grande and São Francisco. We identified five eco-units in each floodplain based on flooding regimes and surveyed six plots per eco-unit. We measured trees with DBH > 5 cm and collected functional traits, along with detailed soil, climate, and water level data. We calculated plot-level floristic composition, taxonomic, functional, and phylogenetic diversity, wood density, and AGB. Functional and phylogenetic dissimilarity were analyzed, and the effects of climate, soil, and hydrological variables were quantified using generalized linear mixed models. We show how flood frequency and duration affect floristic composition across the floodplains. Taxonomic and phylogenetic diversity responded to climate, soil, and hydrological variables, while functional diversity responded primarily to hydrological variables, emphasizing the role of environmental filtering. Hydrological seasonality, soil fertility, and flood regime emerged as key factors shaping community structure and ecological strategies in the studied seasonally flooded tropical forests. Plot-level AGB responded to phosphorus but not to climate or hydrological variables. The study also highlights functional and phylogenetic dissimilarities among eco-units and basins, indicating potential climate change impacts.

Multiple aspects of tree beta diversity in coastal ecosystems in Brazil

AbstractAimPatterns of beta diversity reflect the formation dynamics of ecological communities. Here, we integrated geographic, phylogenetic, and phenotypic information of coastal woody vegetation to investigate (1) whether the observed dissimilarity between assemblages differs from that expected by chance, examining the roles of spatial and deterministic processes; (2) the relative contribution of beta‐diversity components (turnover and nestedness) for taxonomic, phylogenetic, and functional beta diversity; and (3) what environmental factors drive the differences in composition between assemblages for all these dimensions.LocationBrazil.TaxonAngiosperm trees.MethodsWe built dissimilarity matrices and partitioned the taxonomic, phylogenetic, and functional beta diversity from an incidence matrix, a phylogeny including the region's plants, and a matrix expressing functional distances. Using linear regressions, we tested the effects of different environmental predictors representative of the effects of water availability, thermal energy, habitat heterogeneity, edaphic constraints, climatic stability, and human influence on beta‐diversity patterns.ResultsTaxonomic, phylogenetic, and functional dissimilarities exhibited a typical pattern of greater dissimilarity with distance (i.e., as expected by chance). However, these patterns showed different contributions of beta‐diversity components, predominating turnover in taxonomic and phylogenetic dissimilarity, and nestedness in functional dissimilarity. Water availability had a slight effect on patterns of taxonomic and phylogenetic dissimilarities.Main conclusionsThe Brazilian coastal woody vegetation appears to have emerged through a dynamic of colonisation of evolutionarily distinct but functionally similar lineages that originated from adjacent phytogeographic domains, proportional to their diversity. This is consistent with a combination of both neutral and non‐neutral processes. Our findings underscore the complementary roles of different dimensions of beta diversity in explaining the dynamics of these vegetation communities.

Tree mycorrhizal type mediates the responses of foliar stoichiometry and tree growth to functionally dissimilar neighbours in a subtropical forest experiment

Abstract Plant nutrient stoichiometry is of critical importance to productivity and nutrient cycling in terrestrial ecosystems. The impacts of tree species diversity on productivity have been well studied at the stand level. However, it is unclear how neighbourhood interactions impact the foliar nutrient stoichiometry of trees at the neighbourhood scale and how plant mycorrhizal associations can mediate such effects. We randomly selected eight tree species from a large‐scale biodiversity experiment with mixtures up to 32 tree species in subtropical China to assess the effects of species richness, phylogenetic and trait dissimilarities and competition on the foliar nutrient stoichiometry of focal trees associated with either arbuscular mycorrhizal (AM) or ectomycorrhizal (EM) fungi. We further investigated whether neighbourhood diversity can alter focal tree growth by regulating C:N:P stoichiometry. Neighbourhood species richness had no significant impact on the foliar C:N, N:P or C:P for both AM and EM trees. Increased neighbourhood phylogenetic dissimilarity significantly decreased the foliar N:P and C:P of AM trees but did not affect those of EM tree species. Foliar C:N, N:P and C:P of AM trees decreased with increasing neighbour trait (specific leaf area, root diameter, wood density dissimilarity, total trait) dissimilarities, while those of EM trees increased or remained unchanged. The increase of the neighbourhood competition index resulted in an increase in the foliar C:N of AM tree species but not EM tree species. The structural equation model analysis revealed that the increase of neighbourhood phylogenetic dissimilarity and functional trait dissimilarity indirectly enhanced tree growth of AM trees by decreasing foliar C:N. Conversely, the increase of neighbourhood‐specific root length and wood density dissimilarity indirectly reduced the growth of EM trees by increasing foliar N:P. Synthesis. Our results indicate that neighbourhood trait dissimilarity regulated tree foliar stoichiometry and growth performance, but the effects depended on the mycorrhizal type of trees. Our findings highlight the importance of tree mycorrhizal associations for better understanding the relationship between plant diversity and ecosystem functions. Read the free Plain Language Summary for this article on the Journal blog.

Home‐field advantage, N‐priming and precipitation independently govern litter decomposition in a plant diversity manipulation

Abstract Litter decomposition facilitates the recycling of often limiting resources, which may promote plant productivity responses to diversity, that is, overyielding. However, the direct relationship between decomposition, k, and overyielding remains underexplored in grassland diversity manipulations. We test whether local adaptation of microbes, that is, home‐field advantage (HFA), N‐priming from plant inputs or precipitation drive decomposition and whether decomposition generates overyielding. Within a grassland diversity‐manipulation, altering plant richness (1, 2, 3 and 6 species), composition (communities composed of plants from a single‐family or multiple‐families) and precipitation (50% and 150% ambient growing season precipitation), we conducted a litter decomposition experiment. In spring 2020, we deployed four replicate switchgrass, Panicum virgatum, litter bags (1.59 mm mesh opening), collecting them over 7 months to estimate litter k. Precipitation was a strong, independent driver of decomposition. Switchgrass decomposition accelerated with grass richness and decelerated as phylogenetic dissimilarity from switchgrass increased, suggesting decomposition is fastest at ‘home’. However, decomposition slowed with switchgrass density. In plots that contained switchgrass, we observed no relationship between decomposition and fungal saprotroph dissimilarity from switchgrass. However, in plots without switchgrass, decomposition slowed with increasing saprotroph dissimilarity from switchgrass. Combined these findings suggest that HFA is strongest when closely related neighbours, that is, heterospecific neighbours, are present in the community, rather than other individuals of the same species, that is, conspecifics. Legumes accelerated decomposition with more litter N remaining in those plots, suggesting that N‐inputs from planted legumes are priming decomposition of litter C. However, decomposition and overyielding were unrelated in legume communities. While in grass communities, overyielding and decomposition were positively related and the relationship was strongest in plots with low densities of switchgrass, that is, with heterospecific neighbours. Combined these findings suggest that plant species richness and community composition stimulate litter decomposition through multiple mechanisms, including N‐priming, but only HFA from local adaptation of microbes on closely related species correlates with overyielding, likely through resource recycling. Our results link diversity with ecosystem processes facilitating above‐ground productivity. Whether diversity loss will affect litter decomposition, productivity or both is contingent on resident plant traits and whether a locally adapted soil microbiome is maintained. Read the free Plain Language Summary for this article on the Journal blog.

Impact of soil inorganic nitrogen on bacterial phylogeny in estuarine intertidal zones: a study of nitrogen metabolism.

Here we investigated the potential impacts of soil inorganic nitrogen (SIN) content on the phylogenetic characteristics and ecological functions of soil bacterial communities in estuarine intertidal zones in China, aiming to comprehend the response mechanism of soil microorganisms to variations in SIN content within estuarine wetlands. Our results show that SIN in estuarine areas has a significant spatiotemporal variation on spatial and seasonal scales, in this study and is significantly associated with the phylogenetic diversity and phylogenetic turnover of soil bacterial communities. In addition, the results of the metagenomic analysis showed that the relative abundance of nitrogen-cycling functional genes in bacterial communities did not differ significantly in sampling sites and seasons, and weakly correlated with SIN content. Further, the results based on structural equation modeling (SEM) analysis showed that SIN directly and significantly regulated the phylogenetic characteristics of bacterial communities, thereby indirectly affecting the potential of bacterial nitrogen metabolism. This study emphasizes the key influence of SIN variations on the phylogenetic dissimilarity in soil bacterial communities. Moreover, although there was a weak direct relationship between the functional characteristics of the bacterial nitrogen metabolism and SIN content, the spatiotemporal variation of bacterial nitrogen metabolic potential may be indirectly regulated by SIN content by influencing the phylogenetic diversity in bacterial communities. Our study unravels the pivotal mechanisms through which SIN content influences bacterial communities, thereby offering novel insights into the microbial intricacies governing nitrogen metabolism within estuaries.

Detecting benefits of protection level on diversity facets in a sea of temporal scarcity

Abstract The establishment of protected areas to face global diversity declines has mainly prioritized taxonomic diversity, leaving aside phylogenetic and functional diversities, which determine ecosystem functioning and resilience. Furthermore, the assessment of protected areas' effectiveness is mainly done using short‐duration surveys (<2 h), which may undermine the detection of rare species. Through a long‐duration video approach, reef fish taxonomic, phylogenetic and functional facets of diversity were assessed for 3 days within a fully protected area and a nearby poorly protected area in Mayotte Island (Western Indian Ocean). We found that temporally rare species contributed to more than 60% of the taxonomic facet and 85% of the functional facet of biodiversity found on each site. Those rare species, which harbour the most distinct trait values, also make reef fish diversity particularly vulnerable to their loss. Taxonomic, phylogenetic and functional richness were similar between the fully protected area and the poorly protected area, while the species, lineage and trait compositions were markedly different. These results pinpoint the importance of considering taxonomic, functional and phylogenetic dissimilarities while assessing protected areas' effectiveness, instead of using only richness. In addition, benefits of the fully protected area were detected only using more than 15 h of video survey, which emphasizes the importance of long‐duration remote approaches to capture the within‐ and between‐day temporal variations.

Stronger latitudinal phylogenetic patterns in woody angiosperm assemblages with higher dispersal abilities in China

AbstractAimThe equator‐to‐poles decline in the number of species, namely the latitudinal diversity gradient (LDG), is the most conspicuous pattern in biology, yet the underlying mechanisms of this pattern remain controversial. Species dispersal could have strong effects on large‐scale species distributions but has rarely been considered in understanding the LDG. Here we sought to examine how dispersal ability may influence the latitudinal phylogenetic patterns of woody angiosperm assemblages.LocationChina.TaxonWoody angiosperms.MethodsBased on a highly supported mega‐phylogeny constructed from plastid genomes, we assessed the patterns of phylogenetic relatedness and dissimilarity of 1184 trees with three different seed dispersal modes (i.e. zoochory, anemochory and autochory) in 12 permanent forest dynamic plots covering tropical, subtropical and temperate zones in China.ResultsWe found that, compared with zoochorous and anemochorous species, the less vagile autochorous trees exhibited a much weaker latitudinal pattern in phylogenetic relatedness and higher phylogenetic dissimilarity among plots. The phylogenetic dissimilarity pattern of autochorous trees was explained more by geographic distance than environmental factors, consistent with a dominant role for dispersal limitation.Main ConclusionsOur study, for the first time, demonstrates that seed dispersal mode strongly influences the latitudinal phylogenetic patterns of woody angiosperm assemblages in China and highlights the importance of interaction between dispersal limitation and environmental filtering in determining the large‐scale distribution of forest biodiversity.

Sapling recruitment does not compensate for increased tree mortality under climate change

Sapling recruitment within established stands plays an important role in the long-term functionality of forest ecosystems. However, the specific impacts of climate change on sapling recruitment and its underlying mechanisms remain unclear. We hypothesized that sapling recruitment is directly affected by climate change and indirectly through the responses of tree mortality and growth to climate change as well as their induced modification of neighbourhood conditions. We employed a dataset of 173 permanent sample plots with individual stems that were spatially mapped and monitored at 5-year intervals from 1986 to 2010 in the central boreal forests of North America. By constructing structural equation models (SEMs), we examined how sapling recruitment probability may, directly and indirectly, respond to climate change through the mortality and growth of established trees, neighbourhood crowding, and functional and phylogenetic dissimilarities. We used the middle calendar year of a 5-year census period to represent recent systematic temporal trends in climate change. Our SEMs revealed that sapling recruitment probability did not respond significantly directly to temporal climate change in the studied forests, where atmospheric CO2 concentration, air temperature, and climatic water availability simultaneously increased temporally. However, the temporally increased mortality and growth of neighbourhood established trees (all stems except for new recruits) exerted indirect negative effects on sapling recruitment probability. Furthermore, temporally increased neighbourhood crowding had an indirect adverse effect, while temporally increased neighbourhood shade tolerance and phylogenetic dissimilarities had weak indirect positive effects on sapling recruitment probability. Collectively, temporal climate change had a significant total negative effect on sapling recruitment probability. Our analysis demonstrated multiple mechanisms that simultaneously regulated the effect of temporal climate change on sapling recruitment. Our results emphasized that sapling recruitment does not compensate for increased tree mortality. We suggest that even so-called favourable climate change could threaten the long-term functionality of boreal forest ecosystems.

Environmental fluctuations explain the universal decay of species-abundance correlations with phylogenetic distance

Multiple ecological forces act together to shape the composition of microbial communities. Phyloecology approaches-which combine phylogenetic relationships between species with community ecology-have the potential to disentangle such forces but are often hard to connect with quantitative predictions from theoretical models. On the other hand, macroecology, which focuses on statistical patterns of abundance and diversity, provides natural connections with theoretical models but often neglects interspecific correlations and interactions. Here, we propose a unified framework combining both such approaches to analyze microbial communities. In particular, by using both cross-sectional and longitudinal metagenomic data for species abundances, we reveal the existence of an empirical macroecological law establishing that correlations in species-abundance fluctuations across communities decay from positive to null values as a function of phylogenetic dissimilarity in a consistent manner across ecologically distinct microbiomes. We formulate three variants of a mechanistic model-each relying on alternative ecological forces-that lead to radically different predictions. From these analyses, we conclude that the empirically observed macroecological pattern can be quantitatively explained as a result of shared population-independent fluctuating resources, i.e., environmental filtering and not as a consequence of, e.g., species competition. Finally, we show that the macroecological law is also valid for temporal data of a single community and that the properties of delayed temporal correlations can be reproduced as well by the model with environmental filtering.

Phylogenetic Partitioning of Gansu Flora: Unveiling the Core Transitional Zone of Chinese Flora.

Floristic regions, conventionally established using species distribution patterns, have often overlooked the phylogenetic relationships among taxa. However, how phylogenetic relationships influence the historical interconnections within and among biogeographic regions remains inadequately understood. In this research, we compiled distribution data for seed plants in Gansu, a region of significant biogeographic diversity located in northwestern China.We proposed a novel framework for floristic regions within Gansu, integrating distribution data and phylogenetic relationships of genera-level native seed plants, aiming to explore the relationship between phylogenetic relatedness, taxonomic composition, and regional phylogenetic delineation. We found that (1) phylogenetic relatedness was strongly correlated with the taxonomic composition among floras in Gansu. (2) The southeastern Gansu region showed the lowest level of spatial turnover in both phylogenetic relationships and the taxonomic composition of floristic assemblages across the Gansu region. (3) Null model analyses indicated nonrandom phylogenetic structure across the region, where most areas showed higher phylogenetic turnover than expected given the underlying taxonomic composition between sites. (4) Our results demonstrated a consistent pattern across various regionalization schemes and highlighted the preference for employing the phylogenetic dissimilarity approach in biogeographical regionalization investigations. (5) Employing the phylogenetic dissimilarity approach, we identified nine distinct floristic regions in Gansu that are categorized into two broader geographical units, namely the northwest and southeast. (6) Based on the phylogenetic graphic regions of China across this area.

Phylogenetic diversity is a weak proxy for functional diversity but they are complementary in explaining community assembly patterns in temperate vegetation

AbstractEcological differences between coexisting species within plant communities can be assessed by considering functional and phylogenetic dissimilarities either separately or in a complementary way. Here, we studied (a) the potential overlap between functional (FD) and phylogenetic diversities (PD) and (b) their combined and unique roles in explaining community assembly patterns across different temperate vegetation types and across functional traits representing multiple dimensions of plant strategy (plant size, leaf, floral and reproductive, clonal and bud bank traits).We tested the strength of the PD–FD relationship within and across vegetation types and functional traits (Pearson correlations) and tested whether it depended on the strength of the phylogenetic signal (Pagel's lambda and Blomberg'sK). We tested deviations from random expectations in FD and ‘decoupled FD’ (i.e. functional dissimilarity after accounting for the effect of phylogenetic distances between species) to reveal the importance of ecological differences for community assembly.PD–FD correlations were predominantly significant but rarely strong, and largely depended on the studied functional trait and vegetation type. Phylogenetic signals were partially but inconsistently related to the overlap between FD and PD.Community assembly patterns tended to shift from under‐dispersion (FD lower than random expectations) towards over‐dispersion (FD higher than random expectations) when functional distances were decoupled from phylogenetic distances indicating that species within the same clade were dissimilar to each other regarding their traits. However, we found the opposite pattern as well, mainly for floral and below‐ground traits, which indicated functional differentiation across clades.Synthesis. Decoupling functional and phylogenetic differences between species might provide further information on plant community assembly: showing cases where the strongest ecological differentiation between coexisting species occurs between phylogenetically related species rather than between phylogenetically unrelated ones.

Geographical and climate‐dependent patterns in spatial distributions of snail (Mollusca: Gastropoda) assemblages in freshwater wetlands across Northeast China

Abstract A central goal of community ecology and biogeography involves understanding the spatial patterns of organisms and their underlying mechanisms. Understanding how the structure of wetland biomes vary throughout geographical or climatic gradients has critical implications for the ecological restoration and management of wetlands. However, the geographical patterns of snails in freshwater wetlands and the relative contributions of climatic and local environment variables remain poorly elucidated. We investigated 126 freshwater wetlands across four ecoregions (Da Xing'an Mountains, Songnen Plain, Sanjiang Plain and Changbai Mountains) in Northeast China, and collected 105578 individual snails (Mollusca: Gastropoda) belonging to 17 families, 34 genera and 64 species. Overall, snail richness and functional alpha diversity was higher in the wetlands of the Sanjiang Plain than the other three regions. Multivariate analyses results revealed that the taxonomic, functional and phylogenetic structures of snail assemblages differed significantly across the four regions. Higher taxonomic dissimilarities, as well as functional and phylogenetic dissimilarities existed between the wetlands of the Songnen Plain and the other three regions. The variations in taxonomic, functional and phylogenetic structures of snail assemblages were predominantly explained by climatic variables rather than by local environmental variables. For taxonomic structure, salinity explained the greatest variation among all variables, whereas precipitation seasonality explained the greatest variation for functional and phylogenetic structure. Considering extant patterns in assemblage structure and its predictors, aggravated salinization and seasonality of precipitation are expected to act as powerful factors shaping future assemblages. Also, climate‐related factors cause changes and spatial distribution of invertebrate assemblages of freshwater wetlands should be considered to formulate differentiated strategy for biodiversity conservation.

Dispersal syndromes mediate phylogenetic distance decay relationships in a dendritic stream network

AbstractAimUnderstanding the mechanisms underlying the structure and connectivity of ecological communities is a central issue in biogeography. Dispersal syndromes are tightly woven into organisms' life history seen across populations and communities, but measuring dispersal is still complicated in practice. We investigated the role of dispersal syndromes (here, associated with body size, adult flying ability and voltinism) to predict phylogenetic distance decay relationships (DDRs) of aquatic insect assemblages in dendritic stream networks.LocationDu River Basin, China.TaxonAquatic insects (Coleoptera, Diptera, Ephemeroptera, Hemiptera, Lepidoptera, Megaloptera, Odonata, Plecoptera and Trichoptera).MethodsWe applied multiple methods (i.e. deconstruction approach, null models, Mantel tests and partial Mantel tests) to enhance our basic understanding of phylogenetic distance decay patterns. To provide additional insights into correlates of phylogenetic dissimilarity between stream sites, we modelled potential dispersal routes based on overland, watercourse and cost distances.ResultsOverland distances were among the main correlates of phylogenetic distance decay in the stream networks studied, suggesting that aquatic insects disperse overland seeking for habitats suitable for survival and reproduction. However, local environmental filtering was generally more important for phylogenetic DDRs than geographical distances alone. The interaction between environmental vs. dispersal processes in driving spatial patterns of phylogenetic dissimilarity was contingent on different dispersal syndromes. More specifically, significant phylogenetic DDRs were detected only for subsets of large‐bodied, univoltine taxa with strong adult flying abilities, such as dragonflies.Main ConclusionsOverall, historical constraints affect the phylogenetic DDRs in aquatic insects. Dispersal syndromes associated with body size, adult flying ability and voltinism are key features underlying distance decay in phylogenetic assemblage similarity and the evolutionary legacies of aquatic insects in dendritic stream networks.

Phylogenetic patterns in regional flea assemblages from 6 biogeographic realms: strong links between flea and host phylogenetic turnovers and weak effects of phylogenetic originality on host specificity.

We investigated phylogenetic patterns in flea assemblages from 80 regions in 6 biogeographic realms and asked whether (a) flea phylogenetic turnover is driven by host phylogenetic turnover, environmental dissimilarity or geographic distance; (b) the relative importance of these drivers differs between realms; and (c) the environmental drivers of flea phylogenetic turnover are similar to those of host phylogenetic turnover. We also asked whether the phylogenetic originality of a flea species correlates with the degree of its host specificity and whether the phylogenetic originality of a host species correlates with the diversity of its flea assemblages. We found that host phylogenetic turnover was the best predictor of flea phylogenetic turnover in all realms, whereas the effect of the environment was weaker. Environmental predictors of flea phylogenetic turnover differed between realms. The importance of spatial distances as a predictor of the phylogenetic dissimilarity between regional assemblages varied between realms. The responses of host turnover differed from those of fleas. In 4 of the 6 realms, geographic distances were substantially better predictors of host phylogenetic turnover than environmental gradients. We also found no general relationship between flea phylogenetic originality and its host specificity in terms of either host species richness or host phylogenetic diversity. We conclude that flea phylogenetic turnover is determined mainly by the phylogenetic turnover of their hosts rather than by environmental gradients. Phylogenetic patterns in fleas are manifested at the level of regional assemblages rather than at the level of individual species.

Evolutionary diversity gradients in neotropical tree assemblages: New insights from Non‐Flooded Evergreen forests

AbstractWe investigated spatial patterns of evolutionary diversity along Neotropical Non‐Flooded Evergreen Forests (NEF). We addressed the following questions: (i) What are the main NEF evolutionary groups? (ii) How evolutionary diversity varies across NEF environmental gradients? Based on a phylogeny of 1248 tree genera distributed over 1824 NEF assemblages, we examined the evolutionary differentiation using UPGMA and evopca. We measured lineage diversity (ses.PD) and structure (ses.MPD and ses.MNTD) and tested their response to environmental gradients using linear models. Phylogenetic dissimilarity segregated NEF into 12 evolutionary groups that largely confirm groups obtained in our previous work based on floristic similarity. However, one discrepancy was the amalgamation of Amazon and northern Atlantic Forest assemblages, while the southern Atlantic Forest remained an isolated group. Furthermore, Mesoamerica, which had been recognized as a single group, here split into six evolutionary groups. We found greater lineage diversity as altitude and latitude increased and temperature decreased. Evolutionary groups with the highest mean values of lineage diversity were those composed of Mesoamerican cloud forests, which harbor a mixture of tropical and temperate lineages representing a confluence of South and North American floras. We found that variations in phylogenetic diversity in NEF are primarily related to the coexistence of lineages of temperate and tropical climates in the mountain and nebular environments of NEF, indicating the strong contribution of extratropical niche conservatism in structuring evolutionary diversity.

Compositional and phylogenetic beta diversity reveal different patterns of aquatic plant assemblages in lakes along the Changjiang River

Many articles have examined the aquatic flora in lakes along the Changjiang River over the past four decades. However, studies on taxonomic and phylogenetic alpha and beta diversity of aquatic plants along the Changjiang River are lacking. In order to clarify the distribution pattern of aquatic plants in lakes of the Changjiang River, we comprehensively analyzed the phylogenetic structure, compositional beta diversity (CBD), and phylogenetic beta diversity (PBD) of their aquatic plant assemblages. We found strong regional differences in phylogenetic community structures with significant differences in the net relatedness index and nearest taxon index values at subregional scales. Interestingly, similarity clustering based on compositional beta similarity showed that the lakes in the upper Changjiang River and upper Pearl River were clustered into a branch, and then connected with the lakes in the lower Changjiang River. However, similarity clustering based on phylogenetic beta similarity clustered the lakes in the upper and lower Changjiang River together into a branch, before connecting them with the lakes in the upper Pearl River. Additionally, we found significantly higher taxonomic dissimilarity than phylogenetic dissimilarity overall, as well as in individual subregions of the Changjiang River. These results suggested that the uplift of the Qinghai-Tibet Plateau and river capture played important roles in the aquatic plant assemblages of lakes resulting in patterns of geographic endemism at regional scales.

Different responses of soil bacterial species diversity and phylogenetic diversity to short-term nitrogen input in an alpine steppe at the source of Brahmaputra

The Qinghai-Tibet Plateau has experienced an increase in N deposition/input due to global change. However, it remains unclear how the responses and whether the responses of soil bacterial diversity to short-term N input are consistent at different levels. Here, we investigated soil bacterial species and phylogenetic α-diversity and community composition based on a short-term nitrogen input experiment (five levels: 0, 2.5, 5, 10, and 20 g N m−2 y−1) in an alpine steppe at the source of Brahmaputra, using high-throughput sequencing technology. Short-term nitrogen input did not affect the species α-diversity and β-diversity of soil bacteria. However, soil bacterial phylogenetic α-diversity and dissimilarity increased with increasing nitrogen input. Different relative contributions and correlations of primary factors to species and phylogenetic diversity under short-term nitrogen input may result in different responses, in which ecological processes also play a role. Therefore, studying the response of soil bacteria to short-term nitrogen input should take into account not only the species level but also the phylogenetic level. We should pay close attention to the potential influence of short-term nitrogen deposition/fertilization on the soil bacterial community in the alpine steppe on the Tibetan Plateau.

Phylogenetic diversity of eastern Asia–eastern North America disjunct plants is mainly associated with divergence time

The underlying causes of biodiversity disparities among geographic regions have long been a fundamental theme in ecology and evolution. However, the patterns of phylogenetic diversity (PD) and phylogenetic beta diversity (PBD) of congeners that are disjunctly distributed between eastern Asia–eastern North America (EA−ENA disjuncts) and their associated factors remain unknown. Here we investigated the standardized effect size of PD (SES-PD), PBD, and potentially associated factors in 11 natural mixed forest sites (five in EA and six in ENA) where abundant EA−ENA disjuncts occur. We found that the disjuncts in ENA possessed higher SES-PD than those in EA at the continental scale (1.96 vs −1.12), even though the number of disjunct species in ENA is much lower than in EA (128 vs 263). SES-PD of the EA−ENA disjuncts tended to decrease with increasing latitude in 11 sites. The latitudinal diversity gradient of SES-PD was stronger in EA sites than in ENA sites. Based on the unweighted unique fraction metric (UniFrac) distance and the phylogenetic community dissimilarity, PBD showed that the two northern sites in EA were more similar to the six-site ENA group than to the remaining southern EA sites. Based on the standardized effect size of mean pairwise distances (SES-MPD), nine of eleven studied sites showed a neutral community structure (−1.96 ≤ SES-MPD ≤ 1.96). Both Pearson's r and structural equation modeling suggested that SES-PD of the EA–ENA disjuncts was mostly associated with mean divergence time. Moreover, SES-PD of the EA–ENA disjuncts was positively correlated with temperature-related climatic factors, although negatively correlated with mean diversification rate and community structure. By applying approaches from phylogenetics and community ecology, our work sheds light on historical patterns of the EA−ENA disjunction and paves the way for further research.