Phylogenetic Community Composition Research Articles

Topography drives tree–habitat association and functional and phylogenetic structure in the northernmost tropical dry forest of the Americas

ABSTRACT Background Plant species composition and structural attributes are related to physiographic factors such as slope orientation and topographic position. This relationship is accentuated with increasing seasonality in temperature and precipitation. Aims We quantified the relationship between topography and the taxonomic, functional and phylogenetic community composition of woody species at the northernmost distribution of seasonally dry tropical forests (STDF) in the Americas. Methods We related slope orientation (north-facing vs. south-facing) and position (upper slope vs. lower slope) to the distribution of species, assessed their habitat preference by life stage (juvenile vs. adult) and compared the observed phylogenetic distance of species against random species assemblages. Results Our results showed the segregation of two species groups in both life stages is related to slope orientation, but not to topographic position. We found a strong habitat association for 68% of the species with both juveniles and adults similarly associated with the same habitat. Slope orientation was related to taxonomic, functional and phylogenetic structure, but it differed in the two life stages. Conclusions The functional and evolutionary segregation of species between north-facing vs. south-facing habitats indicates that species are non-randomly distributed; suggesting that deterministic mechanisms (e.g. topographic habitat specialisation) are operating at a local scale.

Bacterial communities in a subarctic stream network: Spatial and seasonal patterns of benthic biofilm and bacterioplankton.

Water-column bacterial communities are assembled by different mechanisms at different stream network positions, with headwater communities being controlled by mass effects (advection of bacteria from terrestrial soils) while downstream communities are mainly driven by environmental sorting. Conversely, benthic biofilms are colonized largely by the same set of taxa across the entire network. However, direct comparisons of biofilm and bacterioplankton communities along whole stream networks are rare. We used 16S rRNA gene amplicon sequencing to explore the spatiotemporal variability of benthic biofilm (2 weeks old vs. mature biofilm) and water-column communities at different network positions of a subarctic stream from early summer to late autumn. Amplicon sequence variant (ASV) richness of mature biofilm was about 2.5 times higher than that of early biofilm, yet the pattern of seasonality was the same, with the highest richness in midsummer. Biofilm bacterial richness was unrelated to network position whereas bacterioplankton diversity was negatively related to water residence time and distance from the source. This pattern of decreasing diversity along the network was strongest around midsummer and diminished greatly as water level increased towards autumn. Biofilm communities were phylogenetically clustered at all network positions while bacterioplankton assemblages were phylogenetically clustered only at the most downstream site. Both early and mature biofilm communities already differed significantly between upstream (1st order) and midstream (2nd order) sections. Network position was also related to variation in bacterioplankton communities, with upstream sites harbouring substantially more unique taxa (44% of all upstream taxa) than midstream (20%) or downstream (8%) sites. Some of the taxa that were dominant in downstream sections were already present in the upmost headwaters, and even in riparian soils, where they were very rare (relative abundance <0.01%). These patterns in species diversity and taxonomic and phylogenetic community composition of the riverine bacterial metacommunity were particularly strong for water-column communities, whereas both early and mature biofilm exhibited weaker spatial patterns. Our study demonstrated the benefits of studying bacterioplankton and biofilm communities simultaneously to allow testing of ecological hypotheses about biodiversity patterns in freshwater bacteria.

Milk microbiomes of three great ape species vary among host species and over time

In mammalian neonates, milk consumption provides nutrients, growth factors, immune molecules, and microbes. Milk microbiomes are increasingly recognized for their roles in seeding infant gut microbiomes and priming immune development. However, milk microbiome variation within and among individuals remains under investigation. We used 16S rRNA gene sequencing to investigate factors shaping milk microbiomes in three captive great ape species: Gorilla gorilla gorilla (individuals, N = 4; samples, n = 29), Pongo abelii (N = 2; n = 16), and Pongo pygmaeus (N = 1; n = 9). We demonstrate variation among host species, over lactation, and between housing facilities. In phylogenetic community composition, milk microbiomes were distinct among the three ape species. We found only a few shared, abundant bacterial taxa and suggest that they likely serve functional roles. The diversity and community composition of milk microbiomes showed gradual changes over time in gorillas and the Bornean orangutan, which was detectable with our comprehensive sampling over lactation stages (> 300-day span). In gorillas, milk microbiomes differed between housing facilities, but were similar between dams within a facility. These results support the strong influence of evolutionary history in shaping milk microbiomes, but also indicate that more proximate cues from mother, offspring, and the environment affect the distribution of rarer microbial taxa.

Benthic Microbial Communities in a Seasonally Ice-Covered Sub-Arctic River (Pasvik River, Norway) Are Shaped by Site-Specific Environmental Conditions.

The Pasvik River experiences chemical, physical, and biological stressors due to the direct discharges of domestic sewage from settlements located within the catchment and runoff from smelter and mine wastes. Sediments, as a natural repository of organic matter and associated contaminants, are of global concern for the possible release of pollutants in the water column, with detrimental effects on aquatic organisms. The present study was aimed at characterizing the riverine benthic microbial community and evaluating its ecological role in relation to the contamination level. Sediments were sampled along the river during two contrasting environmental periods (i.e., beginning and ongoing phases of ice melting). Microbial enzymatic activities, cell abundance, and morphological traits were evaluated, along with the phylogenetic community composition. Amplified 16S rRNA genes from bacteria were sequenced using a next-generation approach. Sediments were also analyzed for a variety of chemical features, namely particulate material characteristics and concentration of polychlorobiphenyls, polycyclic aromatic hydrocarbons, and pesticides. Riverine and brackish sites did not affect the microbial community in terms of main phylogenetic diversity (at phylum level), morphometry, enzymatic activities, and abundance. Instead, bacterial diversity in the river sediments appeared to be influenced by the micro-niche conditions, with differences in the relative abundance of selected taxa. In particular, our results highlighted the occurrence of bacterial taxa directly involved in the C, Fe, and N cycles, as well as in the degradation of organic pollutants and toxic compounds.

Global taxonomic and phylogenetic assembly of AM fungi.

Arbuscular mycorrhizal (AM) fungi are a ubiquitous group of plant symbionts, yet processes underlying their global assembly - in particular the roles of dispersal limitation and historical drivers - remain poorly understood. Because earlier studies have reported niche conservatism in AM fungi, we hypothesized that variation in taxonomic community composition (i.e.,unweighted by taxon relatedness) should resemble variation in phylogenetic community composition (i.e., weighted by taxon relatedness) which reflects ancestral adaptations to historical habitat gradients. Because of the presumed strong dispersal ability of AM fungi, we also anticipated that the large-scale structure of AM fungal communities would track environmental conditions without regional discontinuity. We used recently published AM fungal sequence data (small-subunit ribosomal RNA gene) from soil samples collected worldwide to reconstruct global patterns in taxonomic and phylogenetic community variation. The taxonomic structure of AM fungal communities was primarily driven by habitat conditions, with limited regional differentiation, and there were two well-supported clusters of communities - occurring in cold and warm conditions. Phylogenetic structure was driven by the same factors, though all relationships were markedly weaker. This suggests that niche conservatism with respect to habitat associations is weakly expressed in AM fungal communities. We conclude that the composition of AM fungal communities tracks major climatic and edaphic gradients, with the effects of dispersal limitation and historic factors considerably less apparent than those of climate and soil.

Spatial and Annual Variation in Microbial Abundance, Community Composition, and Diversity Associated With Alpine Surface Snow.

Understanding microbial community dynamics in the alpine cryosphere is an important step toward assessing climate change impacts on these fragile ecosystems and meltwater-fed environments downstream. In this study, we analyzed microbial community composition, variation in community alpha and beta diversity, and the number of prokaryotic cells and virus-like particles (VLP) in seasonal snowpack from two consecutive years at three high altitude mountain summits along a longitudinal transect across the European Alps. Numbers of prokaryotic cells and VLP both ranged around 104 and 105 per mL of snow meltwater on average, with variation generally within one order of magnitude between sites and years. VLP-to-prokaryotic cell ratios spanned two orders of magnitude, with median values close to 1, and little variation between sites and years in the majority of cases. Estimates of microbial community alpha diversity inferred from Hill numbers revealed low contributions of common and abundant microbial taxa to the total taxon richness, and thus low community evenness. Similar to prokaryotic cell and VLP numbers, differences in alpha diversity between years and sites were generally relatively modest. In contrast, community composition displayed strong variation between sites and especially between years. Analyses of taxonomic and phylogenetic community composition showed that differences between sites within years were mainly characterized by changes in abundances of microbial taxa from similar phylogenetic clades, whereas shifts between years were due to significant phylogenetic turnover. Our findings on the spatiotemporal dynamics and magnitude of variation of microbial abundances, community diversity, and composition in surface snow may help define baseline levels to assess future impacts of climate change on the alpine cryosphere.

Plant Compartments and Developmental Stages Modulate the Balance between Niche-Based and Neutral Processes in Soybean Microbiome.

Understanding the dynamics of plant-associated microbial communities within agriculture is well documented. However, the ecological processes that assemble the plant microbiome are not well understood. This study elucidates the relative dominance of assembly processes across plant compartments (root, stem, and leaves) and developmental stages (emergence, growth, flowering, and maturation). Bacterial community composition and assembly processes were assessed using 16S rRNA gene amplicon sequencing. Null models that couple phylogenetic community composition and species distribution models were used to evaluate ecological assembly processes of bacterial communities. All models highlighted that the balance between the assembly process was modulated by compartments and developmental stages. Dispersal limitation dominated amongst the epiphytic communities and at the maturation stage. Homogeneous selection dominated assembly across plant compartments and development stages. Overall, both sets of models were mostly in agreement in predicting the prevailing assembly processes. Our results show, for the first time, that even though niche-based processes dominate in the plant environment, the relative influence of dispersal limitation in community assembly is important.

Examining differences in phylogenetic composition enhances understanding of the phylogenetic structure of the shrub community in the northeastern Qinghai-Tibetan Plateau.

Periodic climatic oscillations and species dispersal during the postglacial period are two important causes of plant assemblage and distribution on the Qinghai‐Tibet Plateau (QTP). To improve our understanding of the bio‐geological histories of shrub communities on the QTP, we tested two hypotheses. First, the intensity of climatic oscillations played a filtering role during community structuring. Second, species dispersal during the postglacial period contributed to the recovery of species and phylogenetic diversity and the emergence of phylogenetic overdispersion. To test these hypotheses, we investigated and compared the shrub communities in the alpine and desert habitats of the northeastern QTP. Notably, we observed higher levels of species and phylogenetic diversity in the alpine habitat than in the desert habitat, leading to phylogenetic overdispersion in the alpine shrub communities versus phylogenetic clustering in the desert shrub communities. This phylogenetic overdispersion increased with greater climate anomalies. These results suggest that (a) although climate anomalies strongly affect shrub communities, these phenomena do not act as a filter for shrub community structuring, and (b) species dispersal increases phylogenetic diversity and overdispersion in a community. Moreover, our investigation of the phylogenetic community composition revealed a larger number of plant clades in the alpine shrub communities than in the desert shrub communities, which provided insights into plant clade‐level differences in the phylogenetic structures of alpine and desert shrub communities in the northeastern QTP.

Soil fungal community assembly processes under long‐term fertilization

AbstractUnderstanding the processes that regulate communities of microorganisms is a key issue and focus in microbial ecology. Although fungi play a critical role in soil biogeochemical cycling, their community assembly processes remain largely unknown, especially in agricultural soils. In this study, we investigated the relative importance of five community assembly processes (variable selection, homogeneous selection, homogeneous dispersal, dispersal limitation and an undominated process) in soil fungal communities under long‐term (28 years, 1990–2018) fertilization management consisting of 12 different treatments in triplicate field plots. Using Illumina MiSeq sequencing of the 18S rRNA eukaryotic gene, we observed that fungal communities in manure treatments were all structured primarily by homogeneous dispersal, whereas the communities in chemical fertilizer treatments were structured primarily by homogeneous dispersal and an undominated process. Soil calcium played an important role in shaping the soil fungal community, whereas soil organic matter concentrations had a considerable impact on the soil fungal phylogenetic community composition. Overall, our results suggest that fertilization management should be considered as a key factor driving microbial community assembly processes in farmed soils.Highlights Soil Ca played a key role in shaping eukaryotic microbial community Chemical fertilization resulted in homogenous selection and undominated processes. A combination of chemical and manure fostered homogenous selection processes.

Nitrogen alters effects of disturbance on annual grassland community diversity: Implications for restoration

Abstract In an era of anthropogenically altered disturbance regimes and increased nutrient loads, understanding how communities respond to these perturbations is essential for successful habitat restoration. Disturbance and resource supply can affect community diversity by altering community assembly processes, such as recruitment, mortality or competitive inequalities. The mechanisms behind community responses to these drivers will differentially affect multiple facets of diversity. Here we examine how factorial manipulations of disturbance (raking to remove above‐ground vegetation) and nitrogen supply affect taxonomic and phylogenetic diversity of predominantly annual California grassland communities spanning a 500‐km latitudinal and twofold rainfall gradient. The disturbance caused density‐independent biomass removal and increased access to resources such as space and light, thus mimicking demographic effects of disturbance as considered in ecological models and broadly applicable to empirical systems. We used paired metrics of richness, evenness and community composition to compare evidence from taxonomy and phylogeny. Disturbance increased species and phylogenetic diversity (richness and evenness metrics). However, nitrogen addition interacted with disturbance to reduce species richness and phylogenetic diversity. Undisturbed communities were more strongly clustered phylogenetically, but disturbance eroded this clustering such that communities became more random (i.e. indistinguishable from a null model of assembly). Species composition differed between disturbed and undisturbed communities, and many species were observed in only one community type. Disturbance interacted with nitrogen supply to alter phylogenetic composition of communities, and recently disturbed communities were more spatially variable in phylogenetic composition than undisturbed communities. Phylogenetic composition of communities also differed among nitrogen treatments. Synthesis. Our results suggest that disturbing these grassland communities by removing above‐ground vegetation increased community diversity by increasing recruitment. Seed addition following this type of disturbance is thus likely to be an effective restoration technique. However, we have shown that disturbance combined with nitrogen enrichment reduces community diversity. The mechanism for this enrichment effect does not appear to be linked to increased productivity leading to light limitation. This work suggests restoration efforts employing biomass removal must take nutrient availability into account to maximize local community diversity.

Converting arable land into flowering fields changes functional and phylogenetic community structure in ground beetles

Agri-environmental schemes aim to promote biodiversity in agricultural landscapes. However, knowledge about the impact of these measures on diversity components beyond species richness, especially for non-target species and their ecological functions, is still very poor. Here, we investigated the response of ground beetle communities to the conversion of arable land into flowering fields, which are primarily installed to counteract pollinator loss in agricultural landscapes. We are focusing on the relationship between biodiversity components and the evolutionary relationship among functional groups.Land-use conversion from arable land to flowering fields has changed the phylogenetic community composition of ground beetles towards a phylogenetically clustered community. This is due to an increase in closely related medium-sized herbivorous species and a decrease in evolutionarily distinct small carnivorous species. Phylogenetic clustering did not result in a reduction of functional richness, but it increased the number of unique trait combinations of species within the local communities. This suggests a low ecological redundancy among herbivorous species. Because species richness, functional richness and phylogenetic diversity were unaffected by conversion, phylogenetic community structuring was predominantly driven by species turnover rather than by numerical changes.Flowering fields can act as refuges for herbivorous carabids that potentially affect the surrounding agricultural landscape by providing important ecosystem services such as weed control. To understand the impact of habitat transformation on carabid biodiversity, it was more informative to relate response traits to phylogenic and functional diversity than to use single diversity measures such as species richness. This conclusion might also apply to many other taxa.

Soil fertility and flood regime are correlated with phylogenetic structure of Amazonian palm communities.

Identifying the processes that generate and maintain biodiversity requires understanding of how evolutionary processes interact with abiotic conditions to structure communities. Edaphic gradients are strongly associated with floristic patterns but, compared with climatic gradients, have received relatively little attention. We asked (1) How does the phylogenetic composition of palm communities vary along edaphic gradients within major habitat types? and (2) To what extent are phylogenetic patterns determined by (a) habitat specialists, (b) small versus large palms, and (c) hyperdiverse genera? We paired data on palm community composition from 501 transects of 0.25 ha located in two main habitat types (non-inundated uplands and seasonally inundated floodplains) in western Amazonian rain forests with information on soil chemistry, climate, phylogeny and metrics of plant size. We focused on exchangeable base concentration (cmol+ kg-1) as a metric of soil fertility and a floristic index of inundation intensity. We used a null model approach to quantify the standard effect size of mean phylogenetic distance for each transect (a metric of phylogenetic community composition) and related this value to edaphic variables using generalized linear mixed models, including a term for spatial autocorrelation. Overall, we recorded 112 008 individuals belonging to 110 species. Palm communities in non-inundated upland transects (but not floodplain transects) were more phylogenetically clustered in areas of low soil fertility, measured as exchangeable base concentration. In contrast, floodplain transects with more severe flood regimes (as inferred from floristic structure) tended to be phylogenetically clustered. Nearly half of the species recorded (44 %) were upland specialists while 18 % were floodplain specialists. In both habitat types, phylogenetic clustering was largely due to the co-occurrence of small-sized habitat specialists belonging to two hyperdiverse genera (Bactris and Geonoma). Edaphic conditions are associated with the phylogenetic community structure of palms across western Amazonia, and different factors (specifically, soil fertility and inundation intensity) appear to underlie diversity patterns in non-inundated upland versus floodplain habitats. By linking edaphic gradients with palm community phylogenetic structure, our study reinforces the need to integrate edaphic conditions in eco-evolutionary studies in order to better understand the processes that generate and maintain tropical forest diversity. Our results suggest a role for edaphic niche conservatism in the evolution and distribution of Amazonian palms, a finding with potential relevance for other clades.

Sulphate-Reducing Microorganisms: the Study of Phylogenetic Community Composition, Metabolic Properties, a Role in Natural and Anthropogenic Ecosystems

Representatives of sulfate-reducing bacteria are among the oldest microorganisms on Earth and play a key role in the global biogeochemical cycles of carbon and sulfur, especially in marine ecosystems. Using the modern molecular biological methods based on the analysis of genes 16S rRNA and dsrAB the heterogeneous phylogenetic composition of different communities of sulfate-reducing bacteria in the water column and sediments of the Barents, Baltic and Black seas was studied. In particular, we have found representatives of the genera Desulfovibrio,Desulfomicrobium, Desulfotomaculum, Desulfococcus, Desulfosarcina, Desulfobacter. For the first time, pure cultures were obtained and the psychrophilic black sea sulfate-reducing bacteria from the water column and bottom sediments of the Black sea were fully characterized. In particular, we described as a new species of Desulfofrigus euxinos, which has a wider range of used donors and electron acceptors than a typical strain.

Relative influence of spatial over environmental and historical processes on the taxonomic and phylogenetic beta diversity of Neotropical phyllostomid bat assemblages

AbstractAimEnvironmental, spatial and historical dynamics are widely recognized as fundamental factors underlying community assembly along geographical gradients. We addressed the relative roles of these three processes on the taxonomic (TBD) and phylogenetic beta diversity (PBD) among 108 phyllostomid bat assemblages. Considering the bats’ dispersal abilities, niche requirements and tropical origin, we hypothesized that the current environmental parameters would explain most of the taxonomic and phylogenetic variation among these communities.LocationNeotropics.MethodsWe assessed taxonomic and phylogenetic similarities among these 108 communities using species compositional data. To disentangle the effects of different processes structuring these assemblages, we conducted variance partitioning using distance‐based redundancy analyses. We also examined the spatial structure of these communities and used null models to test whether the assemblages are phylogenetically more or less dissimilar than would be expected by chance.ResultsMost of the variation in TBD and PBD was accounted for by spatial processes. Spatial influences were consistent for beta diversity components and for groups of species with distinct geographical range sizes. We observed a strong and non‐random spatial structure underlying the taxonomic and phylogenetic community composition. A pairwise comparison revealed that most communities had random variation with respect to phylogeny.Main conclusionsSpatial processes were more effective than environmental and historical processes in explaining species and lineages composition of 108 Neotropical phyllostomid assemblages, a result that could be due to topographic complexities limiting species dispersal in this region, regardless of the bats’ dispersal capabilities. In contrast to previous studies of patterns of bat diversity at local and regional scales, our results suggest that the structure of bat assemblages is related to complementary ecological and evolutionary processes at different levels of diversity and geographical scales throughout the Neotropics.

Elevational diversity patterns as an example for evolutionary and ecological dynamics in ferns and lycophytes

AbstractEvolutionary processes such as adaptation, ecological filtering, and niche conservatism involve the interaction of organisms with their environment and are thus commonly studied along environmental gradients. Elevational gradients have become among the most studied environmental gradients to understand large‐scale patterns of species richness and composition because they are highly replicated with different combinations of geographical, environmental and historical factors. We here review the literature on using elevational gradients to understand evolutionary processes in ferns. Some phylogenetic studies of individual fern clades have considered elevation in the analysis or interpretation and postulated that fern diversification is linked to the colonization of mountain habitats. Other studies that have linked elevational community composition and hence ecological filtering with phylogenetic community composition and morphological traits, usually only found limited phylogenetic signal. However, these studies are ultimately only correlational, and there are few actual tests of the evolutionary mechanisms leading to these patterns. We identify a number of challenges for improving our understanding of how evolutionary and ecological processes are linked to elevational richness patterns in ferns: i) limited information on traits and their ecological relevance, ii) uncertainties on the dispersal kernels of ferns and hence the delimitation of regional species pools from which local assemblages are recruited, iii) limited genomic data to identify candidate genes under selection and hence actually document adaptation and selection, and iv) conceptual challenges in developing clear and testable hypotheses to how specific evolutionary processes can be linked to patterns in community composition and species richness.

Geographical variation of body size in sigmodontine rodents depends on both environment and phylogenetic composition of communities

AbstractAimBody size variation in animal assemblages is a widely addressed pattern in biogeographical studies, and is affected by both environmental gradients and phylogenetic constraints. However, no study has yet explored to what extent the association between body size variation and environmental gradients across broad spatial scales is influenced by the biogeographical distribution of different phylogenetic lineages. In this study, we discriminate the influences of environmental variables and phylogenetic community composition on body size variation in South American sigmodontine rodents.LocationSouth America.MethodsWe computed the mean body mass of sigmodontine species co‐occurring in 1 × 1° cells across South America. For each cell we recorded mean values for three environmental variables. We characterized the phylogenetic composition of sigmodontine assemblages within each cell using phylogenetic fuzzy‐weighting and principal coordinates of phylogenetic structure (PCPS). We then partitioned out the influence of environmental factors and the phylogenetic community composition on mean body size.ResultsMean body size variation was mostly explained by shared influence of phylogenetic community composition (PCPS) and environmental factors (68%), while exclusive influence of PCPS was low (19%), and of environment was even lower (0.47%). Increases in body size were related to increases in annual mean temperature, and the influence of environment on body size was mediated by the distribution of sigmodontine lineages across South America.Main conclusionsEnvironment alone was not sufficient to explain body size variation in sigmodontine assemblages. Rather, environmental gradients interacted with historical processes to determine body size variation in the Neotropical assemblages. These results have implications for the way we think of body size gradients across species assemblages, because any gradient in a trait may be a result of differences in the biogeographical distribution of lineages across space, which should be considered in an explicit context.

Assessment of Bacterial Community Assembly Patterns and Processes in Pig Manure Slurry.

The bacterial community assembly patterns and processes are poorly understood in pig manure slurry. We collected pig manure slurry samples during the winter and summer seasons from eight commercial pig farms in South Korea. The V3 region of 16S rRNA genes was PCR amplified and sequenced using paired-end Illumina technology for in-depth characterization of bacterial community. Firmicutes, Bacteroidetes, Proteobacteria, Spirochaetes, and Tenericutes were the predominant bacterial phyla present in slurry samples. Bacterial taxonomic community composition was not influenced by the season; however, phylogenetic community composition was affected by seasonal variations. The community composition and diversity patterns were strongly influenced by pH. The bacterial diversity indices showed a unimodal relationship with pH. Phylogenetic signals were detected over only short phylogenetic distances, revealing that closely related bacterial operational taxonomic units (OTUs) tend to co-occur in the same environment; hence, they are ecologically similar. Across all samples, a niche-based process, through strong environmental filtering imposed by pH, primarily governed bacterial community assembly; however, in samples close to the neutral pH range, the role of environmental filtering was decreased due to neutral community assembly. In summary, pH emerged as the major physico-chemical variable in pig manure slurry that regulates the relative importance of niche-based and neutral processes in shaping the community assembly of bacteria.

Permanent Managed Grassland at Future Climate Change: Is There a Connection between GHG Emission and Composition of Plant and Microbial Communities?

Managed grasslands cover 35% of the European agricultural landscape (184 Mio ha). Within the next century temperature and atmospheric CO2 increase will significantly affect this ecosystem type. In Hesse (Germany) 0.6°C warming of air temperatures occurred already since 1960. At our grassland field site, we will treat ring plots (14.5 m2) with elevated CO2 (+20%), air temperature warming (+2°C) and a combination of these two factors throughout the year, (at least) for three years.We use deep rRNA sequencing (Illumina RNAseq) to reveal bacterial phylogenetic community composition, analyze plant species diversity (Shannon and Ellenberg index) and then integrate treatment response across these traditional disciplines. Finally, measurements of N2O, CH4 and CO2 emissions measured by closed chambers approach and automated systems (LI-COR 8100), support the balance of emitted CO2 equivalents.GHG emissions emerge from both plants and microbes in the soil, and are associated with changes in the community composition of soil microbes. Furthermore, plant functional types can affect ecosystem net GHG emission.We expect that elevated CO2 will improve the plant water-use efficiency, and soil moisture differences will decrease, with consequences for diversity1. Elevated air temperatures will most likely stimulate transpiration and increase the VPD (water vapour deficit) causing rather a soil drying effect. Hence we expect that warming combined with elevated CO2 will be antagonistic. Besides the drying effect, the warming will have an impact on phenology and aboveground biomass production of the vegetation, consequently affecting GHG emissions.As elevated CO2 in the 15 year long running Giessen-FACE led to a doubling of N2O emissions2, a slight increase in CO2 emissions3 and a reduction in CH4 oxidation, turning the system from a GHG sink to a GHG source, we want to test if the combined air temperature warming will enforce those processes or if it will drive antagonistic processes.

Evidence for phylogenetic correlation of plant-AMF assemblages?

Specificity in biotic interactions is mediated' by functional traits inducing shifts in the community species composition. Functional traits are often evolutionarily conserved, resulting in closely related species tending to interact with similar species. This tendency may initially shape the phylogenetic composition of coexisting guilds, but other intraguild ecological processes may either blur or promote the mirroring of the phylogenetic compositions between guilds. The roles of intra- and interguild interactions in shaping the phylogenetic community composition are largely unknown, beyond the mere selectivity in the interguild interactions. Plant facilitation is a phylogenetically structured species-specific process involving interactions not only between the same guild of plants, but also between plants and other guilds such as arbuscular mycorrhizal fungi (AMF). In this study it is hypothesized that reciprocal plant-AMF interactions will leave an interdependent phylogenetic signal in the community composition of both plants and AMF. A correlation was used to test for a relationship between the phylogenetic composition of plant and AMF assemblages in a patchy xeric shrubland environment shaped by plant facilitation. In addition, a null model was used to test whether this correlation can be solely explained by selectivity in plant-AMF interactions. A significant correlation was observed between the phylogenetic composition of plant and AMF assemblages. Plant phylogenetic composition in a patch was related to the predominance of plant species with high nursery quality that can influence the community assembly. AMF phylogenetic composition was related to the AMF phylogenetic diversity in each patch. This study shows that shifts in the phylogenetic composition of plants and AMF assemblages do not occur independently. It is suggested that besides selectivity in plant-AMF interactions, inter-related succession dynamics of plants and AMF within patches could be an ecological mechanism driving community assembly. Future lines of research might explore whether interlinked above- and below-ground dynamics could be occurring across multiple guilds simultaneously.

A phylogenetic perspective on species diversity, β-diversity and biogeography for the microbial world.

There is an increasing interest to combine phylogenetic data with distributional and ecological records to assess how natural communities arrange under an evolutionary perspective. In the microbial world, there is also a need to go beyond the problematic species definition to deeply explore ecological patterns using genetic data. We explored links between evolution/phylogeny and community ecology using bacterial 16S rRNA gene information from a high-altitude lakes district data set. We described phylogenetic community composition, spatial distribution, and β-diversity and biogeographical patterns applying evolutionary relatedness without relying on any particular operational taxonomic unit definition. High-altitude lakes districts usually contain a large mosaic of highly diverse small water bodies and conform a fine biogeographical model of spatially close but environmentally heterogeneous ecosystems. We sampled 18 lakes in the Pyrenees with a selection criteria focused on capturing the maximum environmental variation within the smallest geographical area. The results showed highly diverse communities nonrandomly distributed with phylogenetic β-diversity patterns mainly shaped by the environment and not by the spatial distance. Community similarity based on both bacterial taxonomic composition and phylogenetic β-diversity shared similar patterns and was primarily structured by similar environmental drivers. We observed a positive relationship between lake area and phylogenetic diversity with a slope consistent with highly dispersive planktonic organisms. The phylogenetic approach incorporated patterns of common ancestry into bacterial community analysis and emerged as a very convenient analytical tool for direct inter- and intrabiome biodiversity comparisons and sorting out microbial habitats with potential application in conservation studies.