Carbon Fixation Research Articles

Increasing thermostability of the key photorespiratory enzyme glycerate 3‐kinase by structure‐based recombination

SummaryAs global temperatures rise, improving crop yields will require enhancing the thermotolerance of crops. One approach for improving thermotolerance is using bioengineering to increase the thermostability of enzymes catalysing essential biological processes. Photorespiration is an essential recycling process in plants that is integral to photosynthesis and crop growth. The enzymes of photorespiration are targets for enhancing plant thermotolerance as this pathway limits carbon fixation at elevated temperatures. We explored the effects of temperature on the activity of the photorespiratory enzyme glycerate kinase (GLYK) from various organisms and the homologue from the thermophilic alga Cyanidioschyzon merolae was more thermotolerant than those from mesophilic plants, including Arabidopsis thaliana. To understand enzyme features underlying the thermotolerance of C. merolae GLYK (CmGLYK), we performed molecular dynamics simulations using AlphaFold‐predicted structures, which revealed greater movement of loop regions of mesophilic plant GLYKs at higher temperatures compared to CmGLYK. Based on these simulations, hybrid proteins were produced and analysed. These hybrid enzymes contained loop regions from CmGLYK replacing the most mobile corresponding loops of AtGLYK. Two of these hybrid enzymes had enhanced thermostability, with melting temperatures increased by 6 °C. One hybrid with three grafted loops maintained higher activity at elevated temperatures. Whilst this hybrid enzyme exhibited enhanced thermostability and a similar Km for ATP compared to AtGLYK, its Km for glycerate increased threefold. This study demonstrates that molecular dynamics simulation‐guided structure‐based recombination offers a promising strategy for enhancing the thermostability of other plant enzymes with possible application to increasing the thermotolerance of plants under warming climates.

SAGA1 and MITH1 produce matrix-traversing membranes in the CO2-fixing pyrenoid.

Approximately one-third of global CO2 assimilation is performed by the pyrenoid, a liquid-like organelle found in most algae and some plants. Specialized pyrenoid-traversing membranes are hypothesized to drive CO2 assimilation in the pyrenoid by delivering concentrated CO2, but how these membranes are made to traverse the pyrenoid matrix remains unknown. Here we show that proteins SAGA1 and MITH1 cause membranes to traverse the pyrenoid matrix in the model alga Chlamydomonas reinhardtii. Mutants deficient in SAGA1 or MITH1 lack matrix-traversing membranes and exhibit growth defects under CO2-limiting conditions. Expression of SAGA1 and MITH1 together in a heterologous system, the model plant Arabidopsis thaliana, produces matrix-traversing membranes. Both proteins localize to matrix-traversing membranes. SAGA1 binds to the major matrix component, Rubisco, and is necessary to initiate matrix-traversing membranes. MITH1 binds to SAGA1 and is necessary for extension of membranes through the matrix. Our data suggest that SAGA1 and MITH1 cause membranes to traverse the matrix by creating an adhesive interaction between the membrane and matrix. Our study identifies and characterizes key factors in the biogenesis of pyrenoid matrix-traversing membranes, demonstrates the importance of these membranes to pyrenoid function and marks a key milestone toward pyrenoid engineering into crops for improving yields.

Metabolites from intact phage-infected Synechococcus chemotactically attract heterotrophic marine bacteria.

Chemical cues mediate interactions between marine phytoplankton and bacteria, underpinning ecosystem-scale processes including nutrient cycling and carbon fixation. Phage infection alters host metabolism, stimulating the release of chemical cues from intact plankton, but how these dynamics impact ecology and biogeochemistry is poorly understood. Here we determine the impact of phage infection on dissolved metabolite pools from marine cyanobacteria and the subsequent chemotactic response of heterotrophic bacteria using time-resolved metabolomics and microfluidics. Metabolites released from intact, phage-infected Synechococcus elicited strong chemoattraction from Vibrio alginolyticus and Pseudoalteromonas haloplanktis, especially during early infection stages. Sustained bacterial chemotaxis occurred towards live-infected Synechococcus, contrasted by no discernible chemotaxis towards uninfected cyanobacteria. High-throughput microfluidics identified 5'-deoxyadenosine and 5'-methylthioadenosine as key attractants. Our findings establish that, before lysis, phage-infected picophytoplankton release compounds that attract motile heterotrophic bacteria, suggesting a mechanism for resource transfer that might impact carbon and nutrient fluxes across trophic levels.

Spontaneous Generation of -CH2CN from Acetonitrile at the Air-Water Interface.

Acetonitrile (CH3CN) is considered a very stable molecule in aqueous solutions, and its deprotonation to produce strongly basic -CH2CN requires harsh conditions. CH3CN is also present in the atmosphere, but its chemical transformation pathway at the air-water interface is unknown. In this study, we discovered and verified the unprecedented spontaneous generation of -CH2CN from the CH3CN-H2O solution at the air-water interface of microdroplets, and revealed the indirect deprotonation mechanism of CH3CN by synergistic redox of •OH and electrons in the microdroplets through the capture of key intermediates and computational chemistry. In addition, the dynamic process of indirect deprotonation-protonation was also observed. The high reactivity of -CH2CN in the droplets was revealed via nucleophilic addition to acetone, benzaldehyde, and the parent CH3CN molecule. Furthermore, the -CH2CN generated in the microdroplets underwent a barrier-free nucleophilic addition reaction with CO2 to produce 2-cyanoacetic acid for CO2 fixation. The synergistic redox reaction process revealed in this study provides new insights into microdroplet chemistry, and the distinctive CH3CN reactions identified may provide new clues to unravel the mystery of the CH3CN transformation in the atmospheric environment.

Inside the Atacama Desert: uncovering the living microbiome of an extreme environment.

The Atacama Desert in Chile is one of the driest and most inhospitable places on Earth. To analyze the diversity and distribution of microbial communities in such an environment, one of the most important and challenging steps is DNA extraction. Using commercial environmental DNA extraction protocols, a mixture of living, dormant, and dead cells of microorganisms is extracted, but separation of the different DNA pools is almost impossible. To overcome this problem, we applied a novel method on soils across a west-east moisture transect in the Atacama Desert to distinguish between extracellular DNA (eDNA) and intracellular DNA (iDNA) at the cell extraction level. Here, we show that a large number of living and potentially active microorganisms, such as Acidimicrobiia, Geodermatophilaceae, Frankiales, and Burkholderiaceae, occur in the hyperarid areas. We observed viable microorganisms involved as pioneers in initial soil formation processes, such as carbon and nitrogen fixation, as well as mineral-weathering processes. In response to various environmental stressors, microbes coexist as generalists or specialists in the desert soil environment. Our results show that specialists compete in a limited range of niches, while generalists tolerate a wider range of environmental conditions. Use of the DNA separation approach can provide new insights into different roles within viable microbial communities, especially in low-biomass environments where RNA-based analyses often fail.IMPORTANCEThe novel e- and iDNA separation technique offers insights into the living community at the cell extraction level in the hyperarid Atacama Desert. This approach provides a new framework for analyzing the composition and structure of the potentially active part of the microbial communities as well as their specialization, ecological network and community assembly process. Our findings underscore the significance of utilizing alternative genomic techniques in low-biomass environments where traditional DNA- and RNA-based analyses may not be feasible. The results demonstrate the viability of the proposed study framework and show that specialized microorganisms are important in initial soil formation processes, including microbial-driven mineral weathering, as well as the fixation of carbon and nitrogen.

Enhancement of non-oleaginous green microalgae Ulothrix for bio-fixing CO2 and producing biofuels by ARTP mutagenesis.

Oleaginous green microalgae are often mentioned in algae-based biodiesel industry, but most of them belong to specific genus (Chlorella, Scenedesmus, Botryococcus and Desmodesmus). Thus, the microalgal germplasm resources for biodiesel production are limited. Mutagenesis is regarded as an important technology for expanding germplasm resources. The main purpose of this study is to screen microalgae strains with high carbon dioxide tolerance and high lipid content from mutants derived from indigenous non-oleaginous green microalgae species-Ulothrix SDJZ-17. Two mutants with high CO2 tolerance and high lipid content genetic stability were obtained from the mutants by high-throughput screening, named Ulothrix SDJZ-17-A20 and Ulothrix SDJZ-17-A23. In order to evaluate the potential of CO2 fixation and biofuel production, A20 and A23 were cultured under air and 15% CO2 (v/v) conditions, and their wild-type strains (WT) were used as controls. Under the condition of high CO2 concentration, the growth performance and lipid production capacity of mutant strains A20 and A23 were not only significantly better than those of wild strains, but also better than those of their own cultured under air conditions. Among them, A23 obtained the highest LCE (light conversion efficiency) (14.79%), Fv/Fm (maximal photochemical efficiency of photosystem II) (71.04%) and biomass productivity (81.26mgL-1d-1), while A20 obtained the highest lipid content (22.45%). Both mutants can be used as candidate strains for CO2 fixation and biofuel production. By ARTP (atmospheric and room temperature plasma) mutagenesis with high-throughput screening, the mutants with higher CO2 tolerance, photosynthetic efficiency and lipid productivity can be obtained, even if they are derived from non-oleaginous microalgae, which is of great significance for enriching the energy microalgae germplasm bank, alleviating the global warming and energy crisis.

Comparative transcriptomic and proteomic analyses of two salt-tolerant alfalfa (Medicago sativa L.) genotypes: investigation of the mechanisms underlying tolerance to salt

Abiotic stressors such as salt stress restrict plant development and output, which lowers agricultural profitability. In this study, alfalfa (Medicago sativa L.) varieties with different levels of salt tolerance were examined using high-throughput RNA sequencing (RNA-Seq) and Tandem Mass Tags (TMT) technologies to study the reactions of the root systems to salt stress, from transcriptomics and proteomics perspectives. The varieties Atlantic (AT) and Zhongmu-1 (ZM-1) were selected and evaluated after 2 h and 6 h of treatment with 150 mM NaCl. The results showed that under salt stress for 2 h, 1810 differentially expressed genes (DEGs) and 160 differentially expressed proteins (DEPs) in AT were screened, while 9341 DEGs and 193 DEPs were screened in ZM-1. Under salt stress for 6 h, 7536 DEGs and 118 DEPs were screened in AT, while 11,754 DEGs and 190 DEPs were screened in ZM-1. Functional annotation and pathway enrichment analyses indicated that the DEGS and DEPs were mainly involved in the glutathione metabolism, biosynthesis of secondary metabolites, glycolysis/gluconeogenesis, carbon fixation in photosynthetic organisms, and photosynthesis pathways. A series of genes related to salt tolerance were also identified, including GSTL3 and GSTU3 of the GST gene family, PER5 and PER10, of the PER gene family, and proteins such as APR and COMT, which are involved in biosynthesis of secondary metabolites. This study provides insights into salt resistance mechanisms in plants, and the related genes and metabolic pathways identified may be helpful for alfalfa breeding in the future.

Global Profiling of Protein Phosphorylation, Acetylation, and β-Hydroxybutyrylation in Nannochloropsis oceanica.

Protein post-translational modifications (PTMs) regulate protein functions but remain poorly characterized in Nannochloropsis. This study examined three PTMs: lysine acetylation (Kac), lysine β-hydroxybutyrylation (Kbhb), and phosphorylation. Using LC-MS/MS, we identified 4571 Kac sites, 7812 Kbhb sites, and 6237 phosphorylation sites across 2455, 3109, and 2786 proteins, respectively. Subcellular localization analysis revealed significant overlaps between Kac and Kbhb proteins, primarily in the chloroplast, cytosol, and nucleus, while phosphorylated proteins were predominantly located in the nucleus and chloroplast. Motif analysis highlighted specific amino acid enrichments around modification sites, with several motifs conserved. Additionally, 529 proteins harbored all three PTMs, underscoring the potential regulatory interplay. Kac, Kbhb, and phosphorylated proteins were particularly abundant in glycolysis, the TCA cycle, carbon fixation, and lipid metabolism pathways, influencing energy production and lipid accumulation. Based on previous transcriptome data under nutrient-limited conditions, these frequently modified key enzymes appear to be vital components in the response to abiotic stress. The presence of histone modifications related to Kac and Kbhb might also point to the epigenetic regulation in gene expression and stress adaptation. This comprehensive PTM landscape in N. oceanica provides a foundation of valuable insights into future metabolic engineering and biotechnological applications.

Hydrogen peroxide mediates melatonin-induced chilling tolerance in cucumber seedlings.

MT mitigates chilling damage by enhancing antioxidant system and photosystem activities, and cold-responsive genes expression in cucumbers. H2O2 may act as a downstream signaling molecule in the MT-induced chilling tolerance. Melatonin (MT) and hydrogen peroxide (H2O2) are important endogenous signaling molecules that play multifaceted roles in plant responses to abiotic stress. However, the interactive mechanism by which MT and H2O2 regulate chilling tolerance remains unclear. Here we found that MT exhibited a positive regulatory effect on the chilling tolerance of cucumbers, with an optimum concentration of 100µM. MT markedly enhanced RBOH1 mRNA expression, activity and endogenous H2O2 accumulation in cucumber seedlings. However, 1.0mM H2O2 had no significant effect on mRNA levels of TDC and ASMT, the key genes for MT synthesis, and endogenous MT content. Both MT and H2O2 significantly decreased malondialdehyde (MDA), electrolyte leakage (EL) and chilling injury index (CI) by activating the antioxidant system, thereby alleviating chilling damage in cucumber seedlings. MT and H2O2 improved photosynthetic carbon assimilation, which was primarily attributed to an increase in activity, mRNA expression, and protein levels of RuBPCase and RCA. Meanwhile, MT and H2O2 induced the photoprotection for both PSII and PSI by enhancing the QA's electron transport capacity and elevating protein levels of the photosystems. Moreover, MT and H2O2 significantly upregulated the expression of cold response genes. MT-induced chilling tolerance was attenuated by N', N'-dimethylthiourea (DMTU), a H2O2 specific scavenger. Whereas, the MT synthesis inhibitor (p-chlorophenylalanine, p-CPA) did not influence H2O2-induced chilling tolerance. The positive regulation of MT on the antioxidant system, photosynthesis and cold response gene levels were significantly attenuated in RBOH1-RNAi plants compared with WT plants. These findings suggest that H2O2 may functions as a downstream signaling molecule in MT-induced chilling tolerance in cucumber plants.

Two-stage carbon sequestration by Haematococcus pluvialis: Integrated research from small-scale to pilot-scale cultivation and data quality monitoring.

A novel two-stage carbon sequestration strategy (3 % and 10 % CO2) was developed and its feasibility was comprehensively demonstrated by multiple methods (pilot-scale cultivation, kinetics, economics and carbon fixation analysis). It was also a safe, efficient and low-cost harvesting strategy. At the end of the culture, astaxanthin production and content increased 2.3 and 2.2 times, respectively. Sedimentation rate (SR) was introduced for the first time to evaluate microalgae culture methods. The SR reached 82.2 % after 2 h of standing. Pilot-scale cultivation was achieved outdoors, with the optimal photobioreactor being a 40 L tubular photobioreactor (T-PBRs), which individually achieved 3.1 g/L and 2.3 % biomass and astaxanthin content. The maximum rate of carbon sequestration (227.9 mg/L/d) was observed in 40 L T-PBRs. The cost of producing 1 kg of astaxanthin-enriched Haematococcus pluvialis (H. pluvialis) was only 17.5 USD. This study brings new perspectives to carbon sequestration and the development of astaxanthin markets.

Water-Induced Switching in Selectivity and Steric Control of Activity in Photochemical CO2 Reduction Catalyzed by RhCp*(bpy) Derivatives.

Photocatalytic reduction of CO2 to formic acid (HCOOH) was investigated in either organic or aqueous/organic media by employing three water-soluble [RhIIICp*(LH2)Cl]+ (LH2 = n,n'-dihydroxy-2,2'-bipyridine; n = 4, 5, or 6) in the presence of [Ru(bpy)3]2+, 1,3-dimethyl-2-phenyl-2,3-dihydro-1H-benzo[d]imidazole (BIH) and triethanolamine (TEOA). Through studying the electron-donating effects of two hydroxyl groups introduced into the bipyridyl ligand, we found that the substituent positions greatly affect both the catalytic efficiency and selectivity in CO2 reduction. More importantly, the HCOOH selectivity shows a dramatic increase from 14 to 83% upon switching the solvent media from pure organic to an aqueous/organic mixture, where the H2 selectivity shows a reverse phenomenon. The enhanced HCOOH selectivity and the drastic decrease in the H2 yield are well rationalized by the fact that the catalytic CO2 hydrogenation is not only driven photochemically via the attack of RhIII(H)Cp*(LH2-·) on CO2 but also partly bypassed by a dark H2 addition reaction yielding [RhIII(H)Cp*(L)]- from [RhIIICp*(L)Cl]+, which was also separately investigated under dark conditions. A combination of experimental and theoretical approaches was made to clarify the pKa values of catalyst intermediates together with the abundant species responsible for the major catalytic processes. Our DFT studies unveil that the exceptionally large structural strain given by the steric contacts between the 6,6'-dihydroxyl groups and the Cp* moiety plays a significant role in bringing about an outstanding catalytic performance of the 6,6'-substituted derivative. The intrinsic reaction coordinate calculations were carried out to clarify the mechanism of hydride transfer steps leading to generating formate together with the heterolytic H2 cleavage steps leading to afford the key hydridorhodium intermediates. This study represents the first report on the water-induced high selectivity in CO2-to-HCOOH conversion, shedding new light on the strategy to control the efficiency and selectivity in the catalysis of CO2 reduction.

An optimization method for measuring the stomata in cassava (Manihot esculenta Crantz) under multiple abiotic stresses.

As a gateway for gas exchange, pores regulate the transport of air and water in carbon assimilation, respiration, and transpiration to quickly adapt to environmental changes. Therefore, the study of stomatal movement characteristics of plants is helpful to strengthen the understanding of the mechanism of plant response to multi-environmental stress, and can improve the function of plant resistance to stresses. The stomatal movement of Arabidopsis leaves was observed by staining the stomata with rhodamine 6G, but this method has not been reported in other plant leaf stomata studies. Taking cassava as an example, the correlation between cassava stomatal movement and cassava response to stress was observed by using and improving the staining method. Rhodamine 6G is a biological stain widely used in cell biology and molecular biology. It was found that 1 μM rhodamine 6G could stain the stomata of cassava without affecting stomatal movement (n = 109, p < 0.05). In addition, we proposed that stomata fixed with 4% concentration of formaldehyde after staining were closest to the stomatal morphology of cassava epidermis, so as to observe stomatal movement under different environmental stresses more accurately. Previous methods of measuring stomatal pore size by autofluorescence of cell wall needs to fix the cells for 6 h, but Rhodamine staining can only be observed in 2 min, which greatly improves the experimental efficiency. Compared with the traditional exfoliation method (e.g., Arabidopsis), this method can reduce the damage of the leaves and observe the stomata of the whole leaves more completely, so that the experimental results are more complete. In addition, the method enables continuous leaf processing and observation. Using this method, we further compared four different cassava varieties (i.e., KU50, SC16, SC8, and SC205) and found that there are differences in stomatal density (SD) among cassava varieties, and the difference in the SD directly affects the stress resistance of cassava (n = 107, p < 0.001). This finding has important implications for studying the mechanism of plant response to environmental stress through stomata.

Metabolic regulation of 5-oxoproline for enhanced heat tolerance in perennial ryegrass

Pyroglutamic acid [(5-oxoproline (5-oxp)], a non-protein amino acid, can be converted to glutamate to regulate amino acid metabolism in plants. Its roles in plant adaptation to abiotic stresses, including heat stress, are not well understood. The objectives of this study were to determine whether exogenous application of 5-oxp could promote heat tolerance in cool-season perennial grass species and identify the major metabolic pathways that could be activated or responsive to 5-oxp for enhancing heat tolerance. Perennial ryegrass (Lolium perenne L.) plants were foliar-sprayed with 5-oxp or water (untreated control) prior to and during the exposure to heat stress (35/33 ℃, day/night temperature) or ambient temperature (25/22 ℃, day/night temperature, non-stress control) in controlled-environment growth chambers. Application of 5-oxp improved the heat tolerance of perennial ryegrass, as manifested by the chlorophyll content, photochemical efficiency, cell membrane stability, and antioxidant enzyme activities increasing by 31.2%, 25.7%, 37.2%, and 57.1-258.3%, as well as the reduction in hydrogen peroxide production by 36.8%. Metabolic profiling identified metabolites up-regulated by 5-oxp that are involved in the metabolic pathways of carbon assimilation in photosynthesis, glycolysis and the tricarboxylic acid cycle of respiration, proteinogenic amino acid metabolism, glutathione metabolism, and nucleotide metabolism for DNA or RNA synthesis and ATP generation. The up-regulation or activation of those metabolic processes could contribute to 5-oxp-mediated enhancement in the heat tolerance of perennial ryegrass.

The rDNA Diversity, Interseasonal Dynamic, and Functional Role of Cyanobacteria Synechococcus in the Sub-Arctic White Sea

Planktonic unicellular cyanobacteria are the dominant biomass producers and carbon fixers in the global ocean ecosystem, but they are not abundant in polar seawater. The interseasonal dynamics of picocyanobacterial (PC) abundance, picophytoplankton primary production, and phylogenetic diversity of PC Synechococcus were studied in the sub-Arctic White Sea. The PC abundance varied from 0.2–0.3 × 106 cells/L in February to 5.2–16.7 × 106 cells/L in July. Picophytoplankton primary production ranged from 0.22 mg C/m3 per day in winter to 11.32 mg C/m3 per day in summer. Synechococcus abundance positively correlated with water temperature and river discharge that increased in recent years in the White Sea. Phylogenetic analysis of the 16S rRNA gene and ITS region clone libraries from the White Sea and Barents Sea eDNA revealed picocyanobacterial sequences related to marine Synechococcus subclusters 5.1-I, 5.I-IV, 5.2, and 5.3. All Synechococcus S5.1-I were common in the White and Barents seas and were consistently present in the picophytoplankton composition throughout the year. Synechococcus S5.2 and S5.3 appear in the PC community in summer, suggesting their river origin, and Synechococcus S5.1-IV inhabits only the Barents Sea and was not detected in the White Sea. A unique Synechococcus phylotype was revealed. It is expected that the increase in the abundance of PC and their increasing role in ecosystem functioning, as well as the enrichment of the species composition with new phylotypes in the semi-enclosed sub-Arctic White Sea, which is vulnerable to the effects of climate change, will be characteristic of all Arctic seas in general.

Analysis of Technological Pathways and Development Suggestions for Blast Furnace Low-Carbon Ironmaking

Under the global dual-carbon background, heightened public awareness of climate change and strengthened carbon taxation policies are increasing pressure on the steel industry to transition. Given the urgent need for carbon reduction, the exploration of low-carbon pathways in a blast furnace (BF) metallurgy emerges as crucial. Evaluating both asset retention and technological maturity, the development of low-carbon technologies for BFs represents the most direct and effective technical approach. This article introduces global advancements in low-carbon metallurgical technologies for BFs, showcasing international progress encompassing hydrogen enrichment, oxygen enrichment, carbon cycling technologies, biomass utilization, and carbon capture, utilization, and storage (CCUS) technologies. Hydrogen enrichment is identified as the primary technological upgrade currently, although its carbon emission reduction potential is limited to 10% to 30%, insufficient to fundamentally address high carbon emissions from BFs. Therefore, this article innovatively proposes a comprehensive low-carbon metallurgical process concept with the substitution of carbon-neutral biomass fuels at the source stage—intensification of hydrogen enrichment in the process stage—fixation of CCUS at the end stage (SS-IP-FE). This process integrates the cleanliness of biomass, the high-efficiency of hydrogen enrichment, and the thoroughness of carbon fixation through CCUS, synergistically enhancing overall effectiveness. This integrated strategy holds promise for achieving a 50% reduction in carbon emissions from BFs in the long processes. Critical elements of these core technologies are analyzed, assessing their cost-effectiveness and emission reduction potential, underscoring comprehensive low-carbon metallurgy as a pivotal direction for future steel industry development with high technological feasibility and emission reduction efficacy. The article also proposes a series of targeted recommendations, suggesting short-term focus on technological optimization, the medium-term enhancement of technology research and application, and the long-term establishment of a comprehensive low-carbon metallurgical system.

The ‘photosynthetic C1 pathway’ links carbon assimilation and growth in California poplar

Although primarily studied in relation to photorespiration, serine metabolism in chloroplasts may play a key role in plant CO2 fertilization responses by linking CO2 assimilation with growth. Here, we show that the phosphorylated serine pathway is part of a ‘photosynthetic C1 pathway’ and demonstrate its high activity in foliage of a C3 tree where it rapidly integrates photosynthesis and C1 metabolism contributing to new biomass via methyl transfer reactions, imparting a large natural 13C-depleted signature. Using 13CO2-labelling, we show that leaf serine, the S-methyl group of leaf methionine, pectin methyl esters, and the associated methanol released during cell wall expansion during growth, are directly produced from photosynthetically-linked C1 metabolism, within minutes of light exposure. We speculate that the photosynthetic C1 pathway is highly conserved across the photosynthetic tree of life, is responsible for synthesis of the greenhouse gas methane, and may have evolved with oxygenic photosynthesis by providing a mechanism of directly linking carbon and ammonia assimilation with growth. Although the rise in atmospheric CO2 inhibits major metabolic pathways like photorespiration, our results suggest that the photosynthetic C1 pathway may accelerate and represents a missing link between enhanced photosynthesis and plant growth rates during CO2 fertilization under a changing climate.

Morphological and Physiological Characteristics Influencing CO2 Assimilation Rate and Growth in Different Half-Sib Families of Quercus acuta and Q. glauca

Climate change alters vegetation patterns, pushing subtropical forests further north. These forests play a crucial role for carbon neutrality efforts due to their significant CO2 assimilation potential. This study investigated CO2 assimilation rate along with growth, morphological, and physiological traits in 23 half-sib families of Quercus acuta and 26 half-sib families of Q. glauca, two prominent East Asian evergreen broadleaf species. Q. acuta exhibited significantly higher growth rates, with diameter at breast height (DBH) and aboveground biomass exceeding those for Q. glauca by 12.1% and 69.9%, respectively (p &lt; 0.001). Leaf traits, including leaf mass pear area (LMA), leaf nitrogen, and chlorophyll content, were also greater in Q. acuta, showing 24.5%, 45.8%, and 15.6% higher values (p &lt; 0.001). While photosynthetic traits were similar, Q. acuta exhibited a 12.7% higher intrinsic water-use efficiency (iWUE) (p &lt; 0.01). Among half-sib families, marginal differences were observed in growth traits (p &lt; 0.1), and significant differences in leaf morphology and physiological traits (p &lt; 0.05) were observed. A positive correlation was found between growth and physiological traits associated with the CO2 assimilation rate in Q. acuta, but not in Q. glauca. These findings highlight the potential of Q. acuta and Q. glauca for supporting future carbon neutrality efforts and provide traits supporting carbon uptake, valuable for selecting tree species with enhanced carbon sequestration potential.

Metagenomic Analysis of Microbial Diversity in the Moroccan Coastal Water of the Gibraltar Strait

Coastal waters are known for higher productivity and organic matter levels, which support a high diversity and abundance of microorganisms compared to some aquatic environments. The characterization of marine microbiomes can provide valuable information for evaluating the sustainability of coastal waters that are increasingly subjected to environmental and human impacts. Our study is the first metagenomic study realized on Moroccan Mediterranean coastal seawater. We analyzed and described the Gibraltar Detroit marine microbiome taxonomic and functional profiling using MG-RAST software. Shotgun sequencing revealed a predominance of bacterial taxa, particularly the Proteobacteria (57.29%) and Bacteroidetes (27.06%) phyla, alongside notable populations of eukaryotes, viruses, and archaea. Alphaproteobacteria and Gammaproteobacteria emerged as the dominant bacterial classes, while Flavobacteria represented a significant portion of Bacteroidetes. Functional profiling of the microbial community highlighted a wide array of metabolic pathways, emphasizing genes related to carbohydrate metabolism, amino acid synthesis, and protein processing. The marine microbiome exhibited essential biogeochemical activities, particularly in nitrogen, sulfur, and carbon cycles, with notable pathways including denitrification, thiosulfate oxidation, and carbon fixation. This functional diversity underlines the microbiome’s role in sustaining ecosystem health through nutrient cycling and organic matter degradation. Our findings offer a crucial baseline for understanding microbial community structure and resilience in Mediterranean coastal ecosystems, with implications for assessing future environmental and anthropogenic impacts on these microbial dynamics.

Growth and Lipid Production of Ankistrodesmus Sp. IFRPD 1061 Under Mixotrophic Culture Condition: Effect of Sodium Acetate Concentration and Period Addition of Sodium Acetate in an Open Pond

AbstractMicroalgae with increased amount of biomass and lipid yield are crucial for biodiesel production. Mixotrophic cultivation has prominence for increasing the micro‐algal cell concentration and hence the volumetric productivity owing to independent utilization of both the photo‐assimilation of CO2 and oxidative assimilation of organic carbon sources. In this study, Ankistrodesmus sp. IFRPD 1061 was examined under various concentrations of sodium acetate for concentration and productivity of biomass and lipid, lipid contents (LCs), and fatty acid profiles. The optimum condition was obtained at Day 21 with 10 mM sodium acetate, which gave 6.940 ± 0.057 g L−1 biomass concentration, 327.619 ± 2.020 mg L−1 day−1 biomass productivity, 2.795 ± 0.191 g L−1 lipid concentration, 131.955 ± 9.275 mg L−1 day−1 lipid productivity, and 40.286 % ± 3.079 % w/w LC. The optimum condition (10 mM sodium acetate) in an open pond cultivation attained maximum values at Day 14, that is, 0.575 ± 0.004 g L−1 biomass concentration, 38.161 ± 0.076 mg L−1 day−1 biomass productivity, 0.203 ± 0.002 g L−1 lipid concentration, 13.440 ± 0.197 mg L−1 day−1 lipid productivity, and 35.219 % ± 0.585 % w/w LC. The lipids recovered from mixotrophic micro‐algae were primarily unsaturated fatty acids, which are appropriate to produce biodiesel. The results revealed that a 10 mM sodium acetate concentration can enhance lipid accumulation within algal cells.

Spatiotemporal Encapsulation of Tandem Enzymes in Hierarchical Metal-Organic Frameworks for Cofactor-Dependent Photoenzymatic CO2 Conversion.

The photo-enzyme coupling system (PECS) holds immense potential in "green" biomanufacturing, encompassing the realms of pharmaceuticals, fuels, and carbon sequestration. Nevertheless, the intricate nature of enzymes' structures significantly impedes the seamless integration of multiple enzymes in a precise, tandem fashion, with exact control over their distribution, posing a formidable challenge. Herein, it has devised a mesoporous csq-type metal organic framework (Zr-MOF) from meso-tetrakis-(4-((phenyl)ethynyl)benzoate)porphyrin (Por-PTP) and Zr6(μ3-O)4(μ3-OH)4(OH)4(H2O)4) nodes (Zr6clusters), featuring intricate hierarchical hexagonal (5.8nm) and triangular (2.9nm) channels, enabling the simultaneous encapsulation of Formate dehydrogenase from Candida boidinii (CbFDH)and ferredoxin-NADP+ reductase (FNR) via a spatiotemporally controlled strategy for cofactor-dependent photoenzymatic carbon dioxide (CO2) conversion. Upon illumination, photoexcited electrons originating from the Zr-MOF frameworks migrate to the adjacent FNR for cofactor NADH regeneration, which is then harnessed by proximal CbFDH for CO2 fixation. Concurrently, the resulting holes are neutralized by AA for system recovery. The results demonstrated the confinement of tandem enzymes within MOF channels significantly enhanced the performance of multi-enzyme cascade pathways as well as augmenting the local NAD+/NADH, which leading to a further improvement in the efficiency of tandem biocatalytic formic acid generation (55mm) from CO2. Crucially, the photo-enzyme-coupled factories exhibited remarkable stability alongside exceptional recyclability, attributed to the preservation of MOF skeletons.