Photochemical Ring-opening Reaction Research Articles

Automatic Clustering of Excited-State Trajectories: Application to Photoexcited Dynamics.

We introduce automatic clustering as a computationally efficient tool for classifying and interpreting trajectories from simulations of photo-excited dynamics. Trajectories are treated as time-series data, with the features for clustering selected by variance mapping of normalized data. The L2-norm and dynamic time warping are proposed as suitable similarity measures for calculating the distance matrices, and these are clustered using the unsupervised density-based DBSCAN algorithm. The silhouette coefficient and the number of trajectories classified as noise are used as quality measures for the clustering. The ability of clustering to provide rapid overview of large and complex trajectory data sets, and its utility for extracting chemical and physical insight, is demonstrated on trajectories corresponding to the photochemical ring-opening reaction of 1,3-cyclohexadiene, noting that the clustering can be used to generate reduced dimensionality representations in an unbiased manner.

Robust Inversion of Time-Resolved Data via Forward-Optimization in a Trajectory Basis.

An inversion method for time-resolved data from ultrafast experiments is introduced, based on forward-optimization in a trajectory basis. The method is applied to experimental data from X-ray scattering of the photochemical ring-opening reaction of 1,3-cyclohexadiene and electron diffraction of the photodissociation of CS2. In each case, inversion yields a model that reproduces the experimental data, identifies the main dynamic motifs, and agrees with independent experimental observations. Notably, the method explicitly accounts for continuity constraints and is robust even for noisy data.

Multistimulus Response of Two Tautomeric Zn(II) Complexes and Their White-Light Emission Based on Different Mechanisms.

A triphenylamine (TPA)-based 2H-quinazoline Zn(II) complex (Q-TPA-Zn) exhibiting dual fluorescence and phosphorescence emission in the solid state was designed and prepared. It possesses mechanochromic luminescence and thermochromic luminescence properties. In the solid state, the white afterglow luminescence could be observed at 77 K (CIExy: 0.27, 0.33) while cyan luminescence could be observed at 297 K. After thermolysis at 300 °C, Q-TPA-Zn could be transformed into Schiff base complex S-TPA-Zn with white fluorescence in the powder state (CIExy: 0.32, 0.38), in methanol (CIExy: 0.32, 0.39), and in dimethylformamide (CIExy: 0.26, 0.32) at room temperature. This arises from dual emission of normal* emission and tautomeric* emission induced by excited-state intramolecular proton transfer (ESIPT) from the benzimidazole NH group to the Schiff base N atom. Q-TPA-Zn could also be transformed into its isomeric form, S-TPA-Zn, through photochemical ring-opening reaction upon irradiation under 365 nm in the solution, exhibiting high-contrast photochromic luminescence. Interestingly, S-TPA-Zn could further be transformed into its zwitterionic isomer after continuous irradiation. The same ring-opening reaction could also take place for the orgainc compound Q-TPA via heating or 365 nm irradiation. The ring-opening reaction mechanism and ESIPT emission were interpreted via theoretical calculation.

Ultrafast excited state dynamics of provitamin D3 and analogs in solution and in lipid bilayers.

The photochemical ring-opening reaction of 7-dehydrocholesterol (DHC, provitamin D3) is responsible for the light-initiated formation of vitamin D3 in mammalian skin membranes. Visible transient absorption spectroscopy was used to explore the excited state dynamics of DHC and two analogs: ergosterol (provitamin D2) and DHC acetate free in solution and confined to lipid bilayers chosen to model the biological cell membrane. In solution, the excited state dynamics of the three compounds are nearly identical. However, when confined to lipid bilayers, the heterogeneity of the lipid membrane and packing forces imposed on the molecule by the lipid alter the excited state dynamics of these compounds. When confined to lipid bilayers in liposomes formed using DPPC, two solvation environments are identified. The excited state dynamics for DHC and analogs in fluid-like regions of the liposome membrane undergo internal conversion and ring-opening on 1 ps-2 ps time scales, similar to those observed in isotropic solution. In contrast, the excited state lifetime of a subpopulation in regions of lower fluidity is 7 ps-12 ps. The long decay component is unique to these liposomes and results from the structural properties of the lipid bilayer. Additional measurements in liposomes prepared with lipids having slightly longer or shorter alkane tails support this conclusion. In the lipid environments studied, the longest lifetimes are observed for DHC. The unsaturated sterol tail of ergosterol and the acetate group of DHC acetate disrupt the packing around the molecule and permit faster internal conversion and relaxation back to the ground state.

Photochemical ring-opening reactions of oxirane with the Ehrenfest force topology

Ehrenfest Force F(r) trajectories were constructed for the C-O ring-opening photo-reactions of oxirane. The F(r) trajectories were constructed in an eigenvector-space corresponding to bond-flexing, bond-twist and bond-anharmonicity associated with the least and most preferred directions of charge density accumulation and bond critical point (BCP) sliding respectively. The presence of the torsion of a CH2 group for one of the photo-reactions led to greater symmetry breaking and greater reaction pathway preference. Consistency was found from hybrid Ehrenfest Force F(r) trajectories that were constructed using the Ehrenfest Force F(r) BCPs and the stress tensor eigenvectors.

Next-generation quantum theory of atoms in molecules for the ground and excited state of DHCL

The factors underlying two possible pathways for the Dihydrocostunolide (DHCL) photochemical ring-opening reaction were investigated; the first pathway returned to the ring-closed conformation of the reactant and the second pathway progressed to the ring-opened product. High-level multi-reference DFT methods were used to optimize the two pathways and the density was analyzed using QTAIM and the stress tensor. Oscillations in the chemical character of the fissile bond were found for the first pathway before and after the conical intersection that steered the reaction back to reactant. Conversely, this behavior was absent for the second pathway that led forward to the product.

Dinitrogen Coupling to a Terpyridine-Molybdenum Chromophore Is Switched on by Fermi Resonance

Summary The traditional view of a chemical change is inherently local and classical, and such a change relies on a mix of thermodynamic and kinetic parameters to control reactivity. Often, the thermodynamic stability of chemical bonds necessitates significant energy input for activation. One fundamental question is potentially transformative: can quantum mechanics enable selective bond activation? A possible approach involves strategic input of energy to reaction-specific vibrational levels. Toward this goal, our work describes the coupling of vibrational motions in a terpyridine-molybdenum complex hosting a nonreactive substrate—dinitrogen. Ultrafast coherence spectroscopies revealed a Fermi-resonance coupling mechanism connecting in-plane breathing motion of the light-harvesting terpyridines with the stretching motion of the spatially disparate dinitrogen bridge. Notably, the coupling is significantly enhanced in the photoexcited state. This Fermi resonance indicates an energy conduit that drives the two motions in sync and thereby amplifies vibrational energy exchange. Achieving selective bond activation by bridging vibrations could present a quantum-inspired design principle in synthetic chemistry.

Switching of Radiation Force on Optically Trapped Microparticles through Photochromic Reactions of Pyranoquinazoline Derivatives

Photocontrol of mechanical motions of small objects has attracted much attention to develop mesoscopic remote actuators. For this purpose, photoinduced morphological changes of molecules, molecular aggregates, and crystals have been extensively studied in the field of chemistry and materials science. Here, we propose direct use of momenta of light (i.e. radiation force) to control the motion of small objects, through photochromic reactions of pyranoquinazoline (PQ) derivatives. PQ is colorless in visible wavelength region while it is in closed form and undergoes photochemical ring-opening reactions to form colored isomers upon UV light irradiation; the open-ring isomers return to the colorless closed isomers mainly through the thermal back reaction. In the experiment, individual polymer microparticles with diameters of 7 μm incorporating PQ were trapped by optical tweezers. When the trapped microparticle was irradiated with UV light, the microparticle was pushed along the axis of light propagation about a...

Nanosecond laser flash photolysis of a 6-nitroindolinospiropyran in solution and in nanocrystalline suspension under single excitation conditions.

Nanosecond transient absorption spectroscopy was used to study the photochemical ring-opening reaction for a 6-nitroindolinospiropyran (SP1) in solution and in nanocrystalline (NC) suspension at 298 K. We measured the kinetics in argon purged and air saturated acetonitrile and found that the presence of oxygen affected two out of the three components of the kinetic decay at 440 nm. These are assigned to the triplet excited states of the Z- and E-merocyanines (3Z-MC* and 3E-MC*). In contrast, a long-lived growth component at 550 nm and the decay of a band centered at 590 nm showed no dependence on oxygen and are assigned, respectively, to the ground state Z- and E-merocyanines (Z-MC0 and E-MC0). Laser flash photolysis studies performed in NC suspensions initially showed a very broad, featureless absorption spectrum that decayed uniformly for ca. 70 ns before revealing a more defined spectrum that persisted for greater than 4 ms and is consistent with a mixture of the more stable Z- and E-MC0 structures. We performed quantum mechanical calculations on the interconversion of E- and Z-MCs on the S0 and S1 potential energy surfaces. The computed UV-vis spectra for a scan along the Z → E interconversion reaction coordinate show substantial absorptivity from 300-600 nm, which suggests that the broad, featureless transient absorption spectrum results from the contribution of the transition structure and other high-energy species during the Z to E isomerization.

Solid-State Fluorescence Behavior Induced by Photochemical Ring-Opening Reaction of 1,2-Bis(3-methyl-5-phenyl-2-thienyl)perfluorocyclopentene

Abstract Crystals consisting of the closed-ring form of 1,2-bis(3-methyl-5-phenyl-2-thienyl)perfluorocyclopentene underwent a photochemical ring-opening reaction accompanying crystal fragmentation upon irradiation with visible light. The open-ring form crystal produced by the ring-opening reaction exhibited green fluorescence, whereas open-ring form crystals produced by recrystallization exhibit orange or yellow fluorescence depending on the polymorphic forms. The fluorescence quantum yield of the photogenerated open-ring form crystal was larger than that in n-hexane. The open-ring form exhibits different fluorescence colors depending on the intermolecular interaction in different states.

A Simple and Versatile Strategy for Rapid Color Fading and Intense Coloration of Photochromic Naphthopyran Families.

Benzo-annulated chromenes, i.e., naphthopyrans, are well-known photochromic molecules that undergo photochemical ring-opening reactions to form two colored open-ring isomers, the transoid-cis and transoid-trans forms, upon light irradiation. Though the transoid-cis form returns thermally to the uncolored closed form, the fading rate of the transoid-trans form is extremely slow because of its higher thermal stability. This slow fading behavior of the transoid-trans form is responsible for the persistence of residual color for several minutes to hours, and prevents the application of such molecules to fast photoswitching materials. We have found a new simple and versatile strategy to substantially reduce the amount of the undesirable long-lived colored transoid-trans form by introducing an alkoxy group at the 1-position of azino-fused chromenes, i.e., 8H-pyranoquinazolines. The alkoxy group effectively reduces the formation of the transoid-trans form due to C-H···O intramolecular hydrogen bonding in the transoid-cis form. Moreover, the introduction of a condensed aromatic ring at the 3-position was found to be effective to increase the photosensitivity of the ring-opening reaction. This strategy can also be applied for naphthopyran derivatives and is useful for the development of fast photoresponsive photochromic lenses and fast photoswitching applications such as dynamic holographic materials and molecular actuators.

Controlling Plasmon-Enhanced Fluorescence via Intersystem Crossing in Photoswitchable Molecules.

By harnessing photoswitchable intersystem crossing (ISC) in spiropyran (SP) molecules, active control of plasmon-enhanced fluorescence in the hybrid systems of SP molecules and plasmonic nanostructures is achieved. Specifically, SP-derived merocyanine (MC) molecules formed by photochemical ring-opening reaction display efficient ISC due to their zwitterionic character. In contrast, ISC in quinoidal MC molecules formed by thermal ring-opening reaction is negligible. The high ISC rate can improve fluorescence quantum yield of the plasmon-modified spontaneous emission, only when the plasmonic electromagnetic field enhancement is sufficiently high. Along this line, extensive photomodulation of fluorescence is demonstrated by switching the ISC in MC molecules at Au nanoparticle aggregates, where strongly enhanced plasmonic hot spots exist. The ISC-mediated plasmon-enhanced fluorescence represents a new approach toward controlling the spontaneous emission of fluorophores near plasmonic nanostructures, which expands the applications of active molecular plasmonics in information processing, biosensing, and bioimaging.

Reactive and unreactive pathways in a photochemical ring opening reaction from 2D femtosecond stimulated Raman.

Two-dimensional femtosecond stimulated Raman spectroscopy (2D-FSRS) is used to probe the structural evolution of a modified cyclohexadiene as it undergoes a photoinduced ring opening reaction. Analysis of the excited state stimulated Raman vibrational data reveals oscillations of the center frequencies and amplitudes of 21 high frequency modes. These oscillations in vibrational properties are due to anharmonic couplings between the high frequency finger print modes and the impulsively driven low frequency molecular distortions in the excited state. The largest anharmonic couplings, with intrinsic oscillation magnitudes of up to 40 cm(-1), are observed between the 467 cm(-1) C-C bend and the 1333 cm(-1) C-C stretch with the 191 cm(-1) methyl wag, all of which are centered on the reactive cyclohexadiene moiety. Conversely, motions located on the periphery - the 993 cm(-1) phenyl bend, the 1389 cm(-1) methyl bend and 1580 cm(-1) phenyl C-C stretch - are coupled with the 104 cm(-1) asymmetric bend. These couplings reveal two key energetic pathways: one leading to formation of the ring-opened product and the other reversion back to the ground state. This work is also important because it presents a new powerful method for measuring anharmonicities of potential energy surfaces and determining their role in chemical reactivity.

The photochemical ring opening reaction of chromene as seen by transient absorption and fluorescence spectroscopy

In this paper we investigate the photochromic ring-opening reaction of 2,2-diphenyl-5,6-benzo(2H)chromene. In particular, we study the uncertainties and contradictions in various published reaction models using a combination of transient absorption and fluorescence spectroscopy with femtosecond time resolution. We propose a simplified reaction scheme which is in good agreement with theoretical studies. Here, photoexcitation populates a Franck-Condon state, whose fast vibrational wave packet motion, vibrational relaxation, bond-alternation and/or solvent rearrangement processes occur on the sub-picosecond timescale. Our data suggest that the resulting excited state minimum with picosecond lifetime still features structural characteristics of the closed form. Subsequently, the ring-opened photoproducts are formed in a concerted step from the excited state. The velocity of the photoreaction hence only depends on the time that the molecule needs to reach the transition region between the ground and excited states where the crucial bond breakage occurs.

ChemInform Abstract: Photochemical Ring-Opening Reaction of Indolinospiropyrans Studied by Subpicosecond Transient Absorption.

ChemInform Abstract: Photochemical Ring-Opening Reaction of Indolinospiropyrans Studied by Subpicosecond Transient Absorption.

Dynamic electron correlation effect on conical intersections in photochemical ring-opening reaction of cyclohexadiene: MS-CASPT2 study

A method to locate minimum energy conical intersection (MECI) points with the analytical derivative technique for multistate complete active space second-order perturbation theory is presented. The photochemical ring-opening reaction of cyclohexadiene (CHD) is revisited to examine the effect of dynamic electron correlation on MECI properties. The geometries as well as potential energy landscapes of CHD are found to change remarkably. The energy difference gradient (g) and interstate coupling (h) vectors consisting the branching plane of MECI are also strongly affected. These results indicate the importance of accurate potential energy surfaces for fully understanding photochemical reactions.

Kinetics of Photochromic Induced Energy Transfer between Manganese-Doped Zinc-Selenide Quantum Dots and Spiropyrans

Fluorescence resonance energy transfer (FRET) is investigated with manganese-doped ZnSe nanoparticles (quantum dots) as long fluorescence lifetime donors and spiropyran molecules as acceptors. The kinetics of photochemical ring-opening reaction of spiropyran upon UV-illumination is exploited to achieve efficient quenching of the manganese fluorescence lifetimes at a low temperature of 78 K in methylcyclohexane/isopentane mixture. Modulation of the acceptor structure from closed to open form allows us to investigate the temporal decrease in donor lifetime accompanied with an increase in the efficiency of FRET transfer. A theoretical model proposed by us describes very well the experimental data, thus providing the intimate parameters of FRET transfer in the system quantum dot−dye molecule.

Photostimulated Crystal Lattice Change Induced by the Photochemical Ring-Opening Reaction of Diarylethene Molecules

Abstract Single crystals of the closed-ring isomer of the diarylethene derivative 1,2-bis(2-methyl-6-styryl-1-benzothiophen-3-yl)perfluorocyclopentene underwent a ring-opening reaction with high conversion while keeping their crystalline shape and transparency. Polar plots of the absorption anisotropy revealed that the closed-ring isomer in the crystal maintained an ordered alignment even at high conversion, and the transparency of the single crystal remained intact during photoreaction. X-ray crystal structural analysis showed that the length of the b axis of the unit cell increases as the photoreaction proceeds. The photostimulated crystal-lattice change is attributed to the rotational movement of the thiophene rings of the molecule during the photochemical ring-opening reaction.

Modulation of Unconventional Fluorescence of Novel Photochromic Perimidine Spirodimers

Fluorescence modulation by a class of photochromic perimidine spirodimers, which exhibit a characteristic fluorescence associated with their photochromic reactions, has been described. Upon irradiation using 365 nm light, these non-fluorescent spiro molecules undergo a thermally-reversible ring opening at their spiro junction resulting in the generation of strong fluorescence. The fluorescing species is distinctly different from both the stable ring-closed and the ring-opened compounds, though it appears to have been formed from and remains in equilibrium with the photochemically generated ring-opened form. While the fluorescing species possesses a narrow absorption band with its maximum centered at 500 nm, the ring-opened form exhibits a broad absorption across the visible region with two maxima centered at 410 and 650 nm, respectively. After initiating the photochromic reactions in these molecules using 365 nm light, purely photochemically-controlled fluorescence modulation can be carried out using two wavelengths in the visible region, that is, 500 and 700 nm, while the equilibrium concentration of the ring-opened form and the fluorescing species is controlled. Fluorescence modulation is attained also by controlling the ratio of the ring-closed and ring-opened forms by photochemical ring-opening and thermal ring-closing reactions. The study on the effect of substitution of these molecules suggests that by extending the conjugation of the perimidine core in the ring-opened form the molecule is rendered non-fluorescent and hence it can be assumed that the perimidine core forms the fluorescing entity of the molecule.

Solvent Dependent Conformational Relaxation of cis-1,3,5-Hexatriene

Ultrafast transient absorption spectroscopy was used to study the conformational relaxation dynamics of 1,3,5-cis-hexatriene (Z-HT) produced in the photochemical ring-opening reaction of 1,3-cyclohexadiene (CHD) in methanol and n-propanol solvents. The results are compared with earlier investigations performed using cyclohexane and hexadecane solvents [Anderson, N. A.; Pullen, S. H.; Walker II, L. A.; Shiang, J. J.; Sension, R. J.; J. Phys. Chem. A 1998, 102, 10588-10598.]. The conformational relaxation between hot cZc-HT, cZt-HT, and tZt-HT, where the labels c and t designate cis and trans configurations about the single bonds, is much faster in alcohol solvents than in alkane solvents. The hot Z-HT produced in the photochemical ring-opening reaction evolves from the conformationally strained cZc-HT form to the more stable cZt-HT form on a time scale of 2 ps in alcohols compared with 6 ps in alkanes. The overall decay of the internal vibrational temperature of the hot Z-HT is faster in alcohols (5-6 ps) than alkanes (12-20 ps) and is weakly dependent on the specific alcohol or alkane solvent. A small population of cZt-HT (5-10%) is trapped as the solute equilibrates with the surrounding solvent following UV excitation of CHD or direct UV excitation of Z-HT. The influence of solvent on conformational relaxation of Z-HT was investigated further by probing the temperature dependence of the decay of this thermally equilibrated cZt-HT population. The apparent barrier for the cZt --> tZt conformational isomerization is lower in alcohols (17.4 kJ/mol) than in alkanes (23.5 kJ/mol). However the equilibrium Arrhenius prefactor (A(h)) is an order of magnitude smaller for alcohols (ca. 4 x 10(12)) than alkanes (ca. 6 x 10(13)) resulting in an absolute rate of decay that is faster in the alkane than in the alcohol solvents. These results are discussed in the context of transition state theory and Kramers' theory for condensed phase reaction dynamics.