Psoralens (Ps) are a class of heterocyclic aromatic compounds that have been extensively utilized in the photochemotherapy of skin disorders such as psoriasis and vitiligo, cutaneous T-cell lymphoma. On exposure to ultraviolet light, especially in the range of 320-400 nm, psoralens form chemical crosslinks to the DNA bases in the three steps. The first step is intercalation of psoralen between to adjacent base-pairs. The second step is formation of monoadduct; that is one psoralen molecule photo-react with one strand of DNA. The third step is the cross-linking of the same psoralen molecule to the other strand of DNA, thus covalently linking the two strand of a double stranded DNA. Psoralens have two photochemical reaction sites, 3,4pyrone double bond and 12,13-furan double bond, both of which are engaged in cross-linking of DNA bases. The formation of interstrand cross-linking through C4-cycloaddition of 3,4and 12,13-double bonds to the 5,6-double bond of the pyrimidine bases, especially thymine, in DNA has been correlated with the biological effects of photoexcited psoralens. Binding of Ps to DNA is generally the consequence of two successive events (1) intercalation into DNA between the base pairs; and (2) photocycloaddition reaction of 3,4Pyrone double bond and/or 12,13-furan double bond with 5,6-double bond of thymine. Although several photoproducts of purine bases from direct and photosensitized irradiation of purines are known, the photoaddition reaction between the excited psoralens and purine bases are not well understood. In the present paper, we report that the formation of interstrand cross-linking through C4-cycloaddition of 3,4and 12,13-double bonds to the 5,6-double bond of the pyrimidine bases, especially thymine, in DNA is calculated by the ab initio method. The molecular geometries are optimized at HF levels of theory with the 6-31G basis set by using the Gaussian 03 program. The 6-31G optimizations of the final structures are done to include the effect of electron correlation and the basis set with polarization function. The photosensitization activity of psoralens is generally correlated to their photoreactivity with pyrimidine bases in DNA. The cross-linkage is caused by the formation of cyclobutane adducts, which are produced by photoreactions of the psoralen 3,4-pyrone and 12,13-furan double bonds to two pyrimidine bases. The association energies for photocycloadduct (ΔE) are obtained by subtracting the sum of the energies of the 5MOP and two thymine from the energy of the full optimized photocycloadduct.
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