Photoinduced Radical Pair Research Articles

Limited solvation of an electron donating tryptophan stabilizes a photoinduced charge-separated state in plant (6\u20134) photolyase

(6–4) Photolyases ((6–4) PLs) are ubiquitous photoenzymes that use the energy of sunlight to catalyze the repair of carcinogenic UV-induced DNA lesions, pyrimidine(6–4)pyrimidone photoproducts. To repair DNA, (6–4) PLs must first undergo so-called photoactivation, in which their excited flavin adenine dinucleotide (FAD) cofactor is reduced in one or two steps to catalytically active FADH− via a chain of three or four conserved tryptophan residues, transiently forming FAD•−/FADH− ⋯ TrpH•+ pairs separated by distances of 15 to 20 Å. Photolyases and related photoreceptors cryptochromes use a plethora of tricks to prevent charge recombination of photoinduced donor–acceptor pairs, such as chain branching and elongation, rapid deprotonation of TrpH•+ or protonation of FAD•−. Here, we address Arabidopsis thaliana (6–4) PL (At64) photoactivation by combining molecular biology, in vivo survival assays, static and time-resolved spectroscopy and computational methods. We conclude that At64 photoactivation is astonishingly efficient compared to related proteins—due to two factors: exceptionally low losses of photoinduced radical pairs through ultrafast recombination and prevention of solvent access to the terminal Trp3H•+, which significantly extends its lifetime. We propose that a highly conserved histidine residue adjacent to the 3rd Trp plays a key role in Trp3H•+ stabilization.

Readout of spin quantum beats in a charge-separated radical pair by pump-push spectroscopy.

Spin quantum beats prove the quantum nature of reactions involving radical pairs, the key species of spin chemistry. However, such quantum beats remain hidden to transient absorption–based optical observation because the spin hardly affects the absorption properties of the radical pairs. We succeed in demonstrating such quantum beats in the photoinduced charge-separated state (CSS) of an electron donor–acceptor dyad by using two laser pulses—one for pumping the sample and another one, with variable delay, for further exciting the CSS to a higher electronic state, wherein ultrafast recombination to distinct, optically detectable products of singlet or triplet multiplicity occurs. This represents a spin quantum measurement of the spin state of the CSS at the time instant of the second (push) pulse.

Cryptochrome magnetoreception: four tryptophans could be better than three.

The biophysical mechanism of the magnetic compass sensor in migratory songbirds is thought to involve photo-induced radical pairs formed in cryptochrome (Cry) flavoproteins located in photoreceptor cells in the eyes. In Cry4a—the most likely of the six known avian Crys to have a magnetic sensing function—four radical pair states are formed sequentially by the stepwise transfer of an electron along a chain of four tryptophan residues to the photo-excited flavin. In purified Cry4a from the migratory European robin, the third of these flavin–tryptophan radical pairs is more magnetically sensitive than the fourth, consistent with the smaller separation of the radicals in the former. Here, we explore the idea that these two radical pair states of Cry4a could exist in rapid dynamic equilibrium such that the key magnetic and kinetic properties are weighted averages. Spin dynamics simulations suggest that the third radical pair is largely responsible for magnetic sensing while the fourth may be better placed to initiate magnetic signalling particularly if the terminal tryptophan radical can be reduced by a nearby tyrosine. Such an arrangement could have allowed independent optimization of the essential sensing and signalling functions of the protein. It might also rationalize why avian Cry4a has four tryptophans while Crys from plants have only three.

Magnetic sensitivity of cryptochrome 4 from a migratory songbird.

Night-migratory songbirds are remarkably proficient navigators1. Flying alone and often over great distances, they use various directional cues including, crucially, a light-dependent magnetic compass2,3. The mechanism of this compass has been suggested to rely on the quantum spin dynamics of photoinduced radical pairs in cryptochrome flavoproteins located in the retinas of the birds4-7. Here we show that the photochemistry of cryptochrome 4 (CRY4) from the night-migratory European robin (Erithacus rubecula) is magnetically sensitive in vitro, and more so than CRY4 from two non-migratory bird species, chicken (Gallus gallus) and pigeon (Columba livia). Site-specific mutations of ErCRY4 reveal the roles of four successive flavin-tryptophan radical pairs in generating magnetic field effects and in stabilizing potential signalling states in a way that could enable sensing and signalling functions to be independently optimized in night-migratory birds.

Time-domain shape of electron spin echo signal of spin-correlated radical pairs in polymer/fullerene blends

Temporal shape of electron spin echo (ESE) signal of photoinduced spin-correlated radical pairs (SCRP) in composite of conductive polymer P3HT and substituted fullerene PCBM is studied in details. ESE signals of radical pairs (RP) P3HT+/PCBM− are calculated in realistic model, taking into account finite microwave pulse length. Inhomogeneous broadening of resonant lines and interradical distance distribution are included. Experimentally observed ESE time-domain shape was found to contradict predictions of conventional SCRP theory, which would be valid in the case of very fast electron transfer. Thus, instantaneous formation of singlet SCRP is not the case for P3HT+/PCBM− pair, and spin system has enough time to evolve coherently during sequential electron transfer. While it is impossible to reproduce experimental data within simple singlet SCRP model, assumption of presence of additional – with respect to what is predicted by singlet SCRP theory – AE (absorption/emission) spin polarization gives convincing accordance with the experiment. Density matrix of RP P3HT+/PCBM− is a superposition of two contributions, namely the parts reflecting (i) antiphase polarization of original singlet-born SCRP and (ii) additional AE-polarization which is generated during initial stage of charge separation. AE-polarization affects experimental ESEEM (electron spin echo envelope modulation) traces, as well as ESE shape, making impossible their interpretation via simple singlet SCRP model. However, this effect can be eliminated by averaging of ESEEM traces over EPR spectral positions. Finally, choosing the optimal gate for ESE time-domain integration and proper microwave detection phase tuning are considered.

Heat, pressure and light-induced interconversion of bisdithiazolyl radicals and dimers.

The heterocyclic bisdithiazolyl radical 1b (R1 = Me, R2 = F) crystallizes in two phases. The α-phase, space group P2₁/n, contains two radicals in the asymmetric unit, both of which adopt slipped π-stack structures. The β-phase, space group P2₁/c, consists of cross-braced π-stacked arrays of dimers in which the radicals are linked laterally by hypervalent 4-center 6-electron S···S-S···S σ-bonds. Variable-temperature magnetic susceptibility measurements on α-1b indicate Curie-Weiss behavior (with Θ = -14.9 K), while the dimer phase β-1b is diamagnetic, showing no indication of thermal dissociation below 400 K. High-pressure crystallographic measurements indicate that the cross-braced π-stacked arrays of dimers undergo a wine-rack compression, but the dimer remains intact up to 8 GPa (at ambient temperature). The resistance of β-1b to dissociate under pressure, also observed in its conductivity versus pressure profile, is in marked contrast to the behavior of the related dimer β-1a (R1 = Et, R2 = F), which readily dissociates into a pair of radicals at 0.8 GPa. The different response of the two dimers to pressure has been rationalized in terms of differences in their linear compressibilities occasioned by changes in the degree of cross-bracing of the π-stacks. Dissociation of both dimers can be effected by irradiation with visible (λ = 650 nm) light; the transformation has been monitored by optical spectroscopy, magnetic susceptibility measurements, and single crystal X-ray diffraction. The photoinduced radical pairs persist up to temperatures of 150 K (β-1b) and 242 K (β-1a) before reverting to the dimer state. Variable-temperature optical measurements on β-1b and β-1a have afforded Arrhenius activation energies of 8.3 and 19.6 kcal mol(-1), respectively, for the radical-to-dimer reconversion. DFT and CAS-SCF calculations have been used to probe the ground and excited electronic state structures of the dimer and radical pair. The results support the interpretation that the ground-state interconversion of the dimer and radical forms of β-1a and β-1b is symmetry forbidden, while the photochemical transformation is symmetry allowed.

Broadband Cavity-Enhanced Detection of Magnetic Field Effects in Chemical Models of a Cryptochrome Magnetoreceptor

Broadband cavity-enhanced absorption spectroscopy (BBCEAS) is shown to be a sensitive method for the detection of magnetic field effects (MFEs) in two flavin-based chemical reactions which are simple models for cryptochrome magnetoreceptors. The advantages of optical cavity-based detection and (pseudo-white-light) supercontinuum radiation have been combined to provide full spectral coverage across the whole of the visible spectrum (425 < λ < 700 nm). This region covers the absorbance spectra of flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) as well as their photogenerated radicals. To illustrate the power of this technique, BBCEAS has been used to record the spectral dependence of MFEs for photoinduced radical pairs formed in the intermolecular reaction of FMN with lysozyme and the intramolecular photochemistry of FAD. These reactions have been chosen for their photochemical similarities to cryptochrome proteins which have been proposed as key to the magnetic compass sense of many animals including birds. In experiments performed using low protein concentrations (10 μM) and 1 mm optical path-lengths, absorbance changes as small as 1 × 10(-7) (representing <0.1%MFEs) have been detected with good signal-to-noise offering the prospect of sensitive MFE detection in cryptochrome.

Separation of photo-induced radical pair in cryptochrome to a functionally critical distance

Cryptochrome is a blue light receptor that acts as a sensor for the geomagnetic field and assists many animals in long-range navigation. The magnetoreceptor function arises from light-induced formation of a radical pair through electron transfer between a flavin cofactor (FAD) and a triad of tryptophan residues. Here, this electron transfer is investigated by quantum chemical and classical molecular dynamics calculations. The results reveal how sequential electron transfer, assisted by rearrangement of polar side groups in the cryptochrome interior, can yield a FAD-Trp radical pair state with the FAD and Trp partners separated beyond a critical distance. The large radical pair separation reached establishes cryptochrome's sensitivity to the geomagnetic field through weakening of distance-dependent exchange and dipole-dipole interactions. It is estimated that the key secondary electron transfer step can overcome in speed both recombination (electron back-transfer) and proton transfer involving the radical pair reached after primary electron transfer.

Compass magnetoreception in birds arising from photo-induced radical pairs in rotationally disordered cryptochromes.

According to the radical pair model, the magnetic compass sense of migratory birds relies on photochemical transformations in the eye to detect the direction of the geomagnetic field. Magnetically sensitive radical pairs are thought to be generated in cryptochrome proteins contained in magnetoreceptor cells in the retina. A prerequisite of the current model is for some degree of rotational ordering of both the cryptochromes within the cells and of the cells within the retina so that the directional responses of individual molecules do not average to zero. Here, it is argued that anisotropic distributions of radical pairs can be generated by the photoselection effects that arise from the directionality of the light entering the eye. Light-induced rotational order among the transient radical pairs rather than intrinsic ordering of their molecular precursors is seen as the fundamental condition for a magnetoreceptor cell to exhibit an anisotropic response. A theoretical analysis shows that a viable compass magnetoreceptor could result from randomly oriented cryptochromes contained in randomly oriented cells distributed around the retina.

Following Radical Pair Reactions in Solution: A Step Change in Sensitivity Using Cavity Ring-Down Detection

The study of radical pair intermediates in biological systems has been hampered by the low sensitivity of the optical techniques usually employed to investigate these highly reactive species. Understanding the physical principles governing the spin-selective and magneto-sensitive yields and kinetics of their reactions is essential in identifying the mechanism governing bird migration, and might have significance in the discussion of potential health hazards of electromagnetic radiation. Here, we demonstrate the powerful capabilities of optical cavity-enhanced techniques, such as cavity ring-down spectroscopy (CRDS) in monitoring radical recombination reactions and associated magnetic field effects (MFEs). These include submicrosecond time-resolution, high sensitivity (baseline noise on the order of 10(-6) absorbance units) and small (μL) sample volumes. Combined, we show that these represent significant advantages over the single-pass flash-photolysis techniques conventionally applied. The studies described here focus on photoinduced radical pair reactions involving the protein lysozyme and one of two possible photosensitizers: anthraquinone-2,6-disulphonate and flavin mononucleotide. CRDS-measured MFEs are observed in pump-probe experiments and discussed in terms of the sensitivity gains and sample-volume minimization afforded by CRDS when compared with flash photolysis methods. Finally, CRDS is applied to an in vitro MFE study of intramolecular electron transfer in the DNA-repair enzyme, Escherichia coli photolyase, a protein closely related to cryptochrome which has been proposed to mediate animal magnetoreception.

Pulsed EPR Analysis of the Photo-Induced Triplet Radical Pair in the BLUF Protein SyPixD: Determination of the Protein–Protein Distance and Orientation in the Oligomeric Protein

A photo-induced radical pair of FADH· and Y8· and in BLUF protein SyPixD was studied by pulsed electron paramagnetic resonance (EPR) spectroscopy. Blue light illumination at 150 K for 30 min followed by cooling to 50 K during illumination induced the stable radical pair. The EPR signal has been characterized by a Pake doublet signal with complete S = 1 spin state. The radical pair was utilized as a probe to analyze the oligomer of SyPixD. The relative arrangement of PixD proteins in the complex was investigated by pulsed electron–electron double resonance (PELDOR) with the orientation selection. Based on the decameric structure in the crystal, the possible structure for the PELDOR results was discussed.

EPR study of charge transfer in the poly-3-dodecylthiophene-fullerene system

The EPR spectra of photoinduced radical pairs excited by a laser with photon energies of 1.88, 2.22, and 2.75 eV in poly-3-dodecylthiophene modified by 6,6-phenyl-C61-butanoic acid methyl ester are measured and identified at 77–320 K for the first time. When the volume heterotransition is irradiated in the system, the simultaneous formation of spin charge carriers, polarons, and anion radicals of fullerene with different magnetic resonance parameters is detected. The number of radical pairs follows the activation law and increases with increasing photon energy. The spin-lattice and spin-spin relaxation times of the charge carriers are separately measured by the continuous saturation method. Dynamic parameters are found, and the mechanism of 1D polaron diffusion along the polymer chains and of the rotational diffusion of fullerene molecules about the distinguished axis is determined. The energy parameters of spin charge carriers differ, which indicates their weak interaction in this system.

Direct Observation of a Photoinduced Radical Pair in a Cryptochrome Blue‐Light Photoreceptor

Compass component: Blue-light excitation of the photoreceptor cryptochrome generates a transient radical pair by electron transfer from a tryptophan (Trp) at the surface to the flavin cofactor in the center of the protein (see picture; FAD=flavin adenine dinucleotide). Simulated EPR spectra show that the electronic coupling parameters of these radical pairs are suitable for animal magnetoreception.

Dynamics of photoinduced radical pairs in poly(3-dodecylthiophene)/fullerene composite

Radical pair laser (660nm) photoinduced in poly(3-dodecylthiophene)/[1-(3-methoxycarbonyl)-propyl-1-phenyl-(6,6)C61] (P3DDT/PCBM) composite were investigated by the X-band light-induced EPR method in a wide temperature region. Two lines with different magnetic parameters were attributed to non-interacting polaron and fullerene ion-radical. The susceptibility of these centres follow activation law and decrease drastically at T>180K due to their geminate recombination. The spin–lattice and spin–spin relaxation times of these paramagnetic centres were determined separately by the steady-state saturation method. It was shown that two independent spin dynamics processes are mainly realized in illuminated P3DDT/PCBM composite, namely polaron diffusion along the polymer chains with activation energy of 0.071eV and rotation of fullerene ion-radicals with activation energy of 0.024eV.

Unambiguous Determination of theg-Matrix Orientation in a Neutral Flavin Radical by Pulsed Electron−Nuclear Double Resonance at 94 GHz

The recent observation of photoinduced radical pairs comprising a flavin radical and an oxidized amino acid residue in various blue-light-sensitive proteins has highlighted the need to gain a more complete understanding of the electronic structure of flavin radicals. In particular, precise knowledge of the anisotropy of the Zeeman interaction quantified by the g-tensor is necessary for attaining an unambiguous identification of flavin radicals by electron paramagnetic resonance (EPR). In a recent study of a protein-bound neutral flavin radical, we have determined the principal values of the g-tensor using high-frequency/high magnetic field EPR performed at 360 GHz/12.8 T. However, in those experiments, the orientation of the principal axes of g could not be unambiguously established with respect to the molecular frame of the isoalloxazine moiety. In this contribution we resolve this ambiguity by pulsed electron-nuclear double resonance (ENDOR) at 95 GHz/3.5 T (W-band). At such high values of the microwave frequency and the magnetic field, the g anisotropy provides improved spectral resolution compared to an ENDOR experiment performed at conventional 9.5 GHz/0.35 mT (X-band). This enables one to utilize Zeeman magnetoselection to obtain single-crystal-like data from disordered samples in frozen solution. Experiments exploiting this orientation selection have allowed us to use the hyperfine coupling of the methyl protons at C(8alpha) of the isoalloxazine ring to determine the angle between the molecular frame and the principal axes of g. Quite surprisingly, the g-tensor in FADH* is not oriented as one would have expected for a 1,3-semibenzoquinone radical. For the latter, the X-axis of g commonly bisects the smaller angle between the two axes along the C=O bonds. In FADH*, the large spin density on N(5) and C(4a) apparently contributes to a significant (44 degrees ) reorientation of the g-tensor axes.

Low-Field Optically Detected EPR Spectroscopy of Transient Photoinduced Radical Pairs

The effects of simultaneously applied weak static and weak radio frequency magnetic fields on the recombination of transient (<100 ns) radical pairs have been investigated using a low-field optically detected electron paramagnetic resonance technique. Measurements on the photoinduced electron-transfer reaction of perdeuterated pyrene with 1,3-dicyanobenzene using a approximately 0.3 mT radio frequency field at three separate frequencies (5, 20, and 65 MHz) in the presence of 0-4 mT static fields yield spectra that are strikingly sensitive to the frequency of the time-dependent field, to the strength of the static field, and to the relative orientation of the two fields. The spectra are simulated using a modified form of the gamma-COMPUTE algorithm originally devised for calculating magic angle spinning NMR spectra of polycrystalline samples. The essential features of the spectra are consistent with the radical pair mechanism and were satisfactorily simulated using parameters whose values are either known independently or for which estimates are readily available. The calculations included hyperfine couplings to four deuterons in the pyrene cation radical and three protons in the 1,3-dicyanobenzene anion radical. Spin-selective recombination was modeled using an exponential distribution of radical encounter times. The results are discussed in the context of the proposal that radical pair chemistry forms the basis of the magnetoreceptor that allows birds to sense the Earth's magnetic field as a source of compass information during migration.

Influence of molecular shape on magnetic field effect on photo-induced geminate radical pair in SDS micellar medium

The magnetic field effects (MFEs) on the dynamics of the two radical pairs (RPs), one generated by photo-excitation of phenyl pyrilium ion (PP+) in the presence of SDS micelles and an electron donor, biphenyl, and the other similarly generated from a SDS micellar solution of biphenyl and trioxotriangulenium carbocation (OXO+), have been compared. At zero field, the RP (PP˙/BP˙+) has much higher recombination rate, but much lower escape rate in comparison to the RP (OXO˙ /BP˙+). The field-dependent yields and lifetimes show saturation early ( <0.1 T) in case of the latter, but in case of the former, the saturation does not occur, not even at a field of 5 T. The results have been interpreted in terms of relaxation mechanism (RM) for MFE and expected differences in the location of the guest in the micellar host, which affects the ratio of the rate of recombination to the rate of escape.

Photochemistry of Artificial Photosynthetic Reaction Centers in Liquid Crystals Probed by Multifrequency EPR (9.5 and 95 GHz)

Photoinduced charge separation and recombination in a carotenoid-porphyrin-fullerene triad C-P-C(60)(1) have been followed by multifrequency time-resolved electron paramagnetic resonance (TREPR) at intermediate magnetic field and microwave frequency (X-band) and high field and frequency (W-band). The electron-transfer process has been characterized in the different phases of two uniaxial liquid crystals (E-7 and ZLI-1167). The triad undergoes photoinduced electron transfer, with the generation of a long-lived charge-separated state, and charge recombination to the triplet state, localized in the carotene moiety, mimicking different aspects of the photosynthetic electron-transfer process. Both the photoinduced spin-correlated radical pair and the spin-polarized recombination triplet are observed starting from the crystalline up to the isotropic phase of the liquid crystals. The W-band TREPR radical pair spectrum has allowed unambiguous assignment of the spin-correlated radical pair spectrum to the charge-separated state C(.+)-P-C(60)(.-). The magnetic interaction parameters have been evaluated by simulation of the spin-polarized radical pair spectrum and the spin-selective recombination rates have been derived from the time dependence of the spectrum. The weak exchange interaction parameter (J = +0.5 +/- 0.2 G) provides a direct measure of the dominant electronic coupling matrix element V between the C(.+)-P-C(60)(.-) radical pair state and the recombination triplet state (3)C-P-C(60). The kinetic parameters have been analyzed in terms of the effect of the liquid crystal medium on the electron-transfer process. Effects of orientation of the molecular triad in the liquid crystal are evidenced by simulations of the carotenoid triplet state EPR spectra at different orientations of the external magnetic field with respect to the director of the mesophase. The order parameter (S = 0.5 +/- 0.05) has been evaluated.

Anisotropic recombination of an immobilized photoinduced radical pair in a 50-μT magnetic field: a model avian photomagnetoreceptor

Abstract It has been suggested that chemical reactions proceeding through radical pair intermediates could form the basis of bird’s ability to sense the geomagnetic field as a source of compass information [Biophys. J. 78 (2000) 707]. We present calculations of anisotropic reaction product yields for a flavin–tryptophan radical pair subject to a magnetic field of ∼50 μT. The anisotropic response of the reaction is found to be dominated by two nitrogen nuclei in the flavin radical which have near-axial hyperfine interactions with almost collinear principal axes. It is shown that the anisotropy of the product yields is not strongly dependent on the lifetime of the radical pair in the range 1–5 μs, and that it can be tuned by small variations in the hyperfine tensors of the nuclear spins in the two radicals.

Reaction Center Models in Liquid Crystals: Identification of Paramagnetic Intermediates

Photoinduced charge separation and recombination to the triplet state in a carotene (C) porphyrin (P) fullerene (C 60 ) triad have been followed by time-resolved electron paramagnetic resonance (EPR). The electron transfer process has been studied at different temperatures in both a glassy isotropic matrix (2-methyltetrahydrofuran) and uniaxial liquid crystal (E-7). In both media, the triad undergoes two-step photoinduced electron transfer, with the generation of a long-lived charge separated state (C ” + -P-C 60 ” m ), and charge recombination to the triplet state, localized in the carotene moiety. The carotenoid triplet state is initially polarized according to the mechanism of recombination of a radical pair with singlet precursor. Both the photoinduced spin-correlated radical pair and the carotene triplet are observed in E-7 starting from the glass to the liquid crystal phase. The exchange interaction between the electrons in the radical pair (J=1.2 Gauss) has been evaluated by simulation of the EPR spectrum in the isotropic glass and comparison with the corresponding spectrum in the oriented medium.