A long-term comparative study on the kinetics of enhanced biological phosphorus removal (EBPR) was carried out in pilot scale membrane-assisted and conventional biological phosphorus removal processes, by monitoring system performance, phosphorus mass balances, and maximum specific rates in off-line batch tests. The two systems exhibited similar performance in the removal of soluble phosphorus (P) from the influent wastewater, in the specific P release observed in the anaerobic zone, and in the maximum specific P release and volatile fatty acid (VFA) uptake rates. However, when the VFA in the influent was limiting, the conventional EBPR (CEBPR) process performed significantly better than the membrane (MEBPR) counterpart, and this behavior was also reflected in the kinetics of P release. Denitrifying dephosphatation was observed to be significant in both processes during periods of satisfactory P removal. When the aerobic recycle ratio was reduced to a minimum level, the anoxic P uptake activity in the CEBPR sludge was lower than that of the MEBPR sludge. Finally, the biomass decay rates of the two sludge types were estimated to be comparable, with significant reduction of the decay under unaerated conditions.