Background: Small-cell transformation is one of the resistance mechanisms (4–14%) to Epidermal Growth Factor Receptor (EGFR) Tyrosine Kinase Inhibitors (TKIs) in EGFR-mutant lung adenocarcinomas (LADCs). Although bi-allelic inactivation of TP53 and RB1 is identified as the major genetic footprint of t-SCLC, the molecular driving force to the small cell transformation is still unknown. Recent studies to classify the genetic subtypes of de novo SCLC have guided subtype-specific treatment strategies. Here, we characterized the subtypes of nine t-SCLC cases and two t-SCLC patient-.derived cell lines. Material and methods: We compared RNA profiles of two t-SCLC cell lines (SNU-2962A and SNU-4505) with 57 LADC and 48 SCLC cell lines from the Cancer Cell Line Encyclopedia (CCLE). We investigated the molecular subtypes of t-SCLC and their therapeutic strategies. SNU-2962A and SNU-4505 cells were seeded in 384-well plates containing the siRNA of 709 kinases for 72hr. Furthermore, cell viability assays were performed on drugs targeting genes suggested as subtype-specific vulnerabilities in de novo SCLC. We also examined four subtype markers (ASCL1, NEUROD1, POU2F3, and YAP1) by immunohistochemistry (IHC) in t-SCLC tumor samples of 5 EGFR-mutant and 3 EGFR wild-type patients. Results: RNA-seq results showed that the SNU-2962A cell line was classified into the NEUROD1 subtype with high expression of neuroendocrine genes and typical SCLC markers (SYP, CHGA, and NCAM1). In contrast, the SNU-4505 cell line, classified as a YAP1 subtype, has EMT characteristics with low neuroendocrine and SCLC marker expressions. A dimension reduction plot of RNA expression showed that the SNU-2962A cell line was clustered close to the NEUROD1 subtype. The SNU-4505 cell line was located close to LADC with other SCLC-YAP1 cell lines. We tested the drug sensitivities of the targets based on kinome screening and the previously proposed subtype-specific vulnerabilities. In both cell lines, PLK1 knockdown significantly reduced cell viability. SNU-2962A cell line was sensitive to bromodomain and extra-terminal (BET) inhibitors, and the apoptotic pathway was activated through Caspase signaling. SNU-4505 cell lines did not show sensitivity to the drugs tested except for paclitaxel. Subtype classification by IHC in patient samples was positive for at least one subtype marker. In most cases, ASCL1 or NEUROD1 that exhibits neuroendocrine characteristics was identified as a dominant subtype. In addition, there was no difference of subtypes, according to the EGFR status. Conclusions: Our in vitro studies suggest that EGFR-mutant t-SCLC can be classified into subtypes like de novo SCLC. NEUROD1-positive SNU-2962A cell line was sensitive to BET inhibition, whereas YAP1-positive SNU-4505 cell line was only sensitive to paclitaxel, suggesting a subtype-specific therapeutic strategy in t-SCLC. Conflict of interest: Advisory Board: T.M. Kim reports advisory role or honorarium from AstraZeneca/MedImmune, Bayer, Boryung, Hanmi, Janssen, Novartis, Roche/Genentech, Sanofi, and Takeda. D.W. Kim reports Uncompensated consultation or advisory role from Amgen, AstraZeneca, BMS/ONO Pharmaceuticals, Daiichi-Sankyo, GSK, Janssen, Meck, MSD, Oncobix, Pfizer, SK Biopharm, and Takeda Corporate-sponsored Research: T.M. Kim reports research funding from Amgen, AstraZeneca/Medimmune, Boehringer-Ingelheim, BMS, Hanmi, Janssen, Merck, MSD, Novartis, Regeneron, Roche/Genentech, Sanofi, and Takeda. D.W. Kim reports research funding from Alpha Biopharma, Amgen, Astrazeneca/Medimmune, Boehringer-Ingelheim, BMS, Bridge BioTherapeutics, Chong Keun Dang, Daiichi-Sankyo, GSK, Hanmi, Janssen, Merck, Merus, Mirati Therapeutics, MSD, Novartis, ONO Pharmaceutical, Pfizer, Roche/Genentech, Takeda, TP Therapeutics, Xcovery, and Yuhan and laboratory research funding from InnoN. Other Substantive Relationships: D.W. Kim reports travel and accomodation support for advisory board meeting attendance from Amgen, Daiichi-Sankyo and medical writing assistance from Amgen, AstraZeneca, Boehringer-Ingelheim, BMS, Chong Keun Dang, Daiichi-Sankyo, GSK, Pfizer, MSD, Meck, Novartis, Roche, Takeda, and Yuhan.