Peripheral Tissue-restricted Antigens Research Articles

The transcription factor Sox4 is required for thymic tuft cell development.

Medullary thymic epithelial cells (mTECs) help shape the thymic microenvironment for T-cell development by expressing a variety of peripheral tissue-restricted antigens (TRAs). The self-tolerance of T cells is established by negative selection of autoreactive T cells that bind to TRAs. To increase the diversity of TRAs, a fraction of mTECs terminally differentiates into distinct subsets resembling atypical types of epithelial cells in specific peripheral tissues. As such, thymic tuft cells that express peripheral tuft cell genes have recently emerged. Here, we show that the transcription factor SRY-box transcription factor 4 (Sox4) is highly expressed in mTECs and is essential for the development of thymic tuft cells. Mice lacking Sox4 specifically in TECs had a significantly reduced number of thymic tuft cells with no effect on the differentiation of other mTEC subsets, including autoimmune regulator (Aire)+ and Ccl21a+ mTECs. Furthermore, Sox4 expression was diminished in mice deficient in TEC-specific lymphotoxin β receptor (LTβR), indicating a role for the LTβR-Sox4 axis in the differentiation of thymic tuft cells. Given that Sox4 promotes differentiation of peripheral tuft cells, our findings suggest that mTECs employ the same transcriptional program as peripheral epithelial cells. This mechanism may explain how mTECs diversify peripheral antigen expression to project an immunological self within the thymic medulla.

Conceiving the Inconceivable: The Function of Aire in Immune Tolerance to Peripheral Tissue-Restricted Antigens in the Thymus.

The pursuit of the understanding of mechanisms underlying immune tolerance has led to some of the most important breakthroughs in immunology. The discovery by Mathis, Benoist, and colleagues ([1][1]) of an essential function for the autoimmune regulator ( Aire ) gene in establishing tolerance to

Graft-versus-host disease reduces lymph node display of tissue-restricted self-antigens and promotes autoimmunity.

Acute graft-versus-host disease (GVHD) is initially triggered by alloreactive T cells, which damage peripheral tissues and lymphoid organs. Subsequent transition to chronic GVHD involves the emergence of autoimmunity, although the underlying mechanisms driving this process are unclear. Here, we tested the hypothesis that acute GVHD blocks peripheral tolerance of autoreactive T cells by impairing lymph node (LN) display of peripheral tissue–restricted antigens (PTAs). At the initiation of GVHD, LN fibroblastic reticular cells (FRCs) rapidly reduced expression of genes regulated by DEAF1, an autoimmune regulator-like transcription factor required for intranodal expression of PTAs. Subsequently, GVHD led to the selective elimination of the FRC population, and blocked the repair pathways required for its regeneration. We used a transgenic mouse model to show that the loss of presentation of an intestinal PTA by FRCs during GVHD resulted in the activation of autoaggressive T cells and gut injury. Finally, we show that FRCs normally expressed a unique PTA gene signature that was highly enriched for genes expressed in the target organs affected by chronic GVHD. In conclusion, acute GVHD damages and prevents repair of the FRC network, thus disabling an essential platform for purging autoreactive T cells from the repertoire.

One-two punch injury to tolerance mechanisms in graft-versus-host disease.

Chronic graft-versus-host disease (GVHD) is a major complication of allogeneic hematopoietic cell transplantation that resembles autoimmunity, with unclear pathogenesis and few effective therapeutic options. In this issue of the JCI, Dertschnig et al. used mouse models to investigate the basis of T cell autoreactivity following GVHD. Notably, GVHD caused irreversible damage to a population of tolerogenic stromal cells that display peripheral tissue-restricted antigens in lymph nodes, which impaired their capacity to purge and suppress autoreactive T cells. Together with damage to central tolerance mechanisms in the thymus, these findings outline a critical one-two punch injury that profoundly disrupts immune tolerance in this devastating disease.

Bruno Kyewski 1950‐2018

Bruno Kyewski, a dear friend and colleague, passed away in March 2018 after a long battle against early metastasizing prostate cancer. With him we have lost a remarkable and visionary scientist who more than 40 years ago set out to unravel the immunological secrets of the thymus and its role in self-tolerance. Bruno was born in the idyllic village of Bad Peterstal in the Black Forest and studied medicine in Bonn and Zürich. He earned his MD in 1978 with Hartmut Wekerle at the Max-Planck-Institute for Immunobiology in Freiburg, in those days one of the cradles of immunologists in Germany. Inspired by Wekerle´s thymic nurse cells Bruno developed his interest and passion for the role of the thymus in shaping the T cell repertoire and self-tolerance. He continued to work on the thymus as a postdoc in Henry Kaplan's laboratory at Stanford University Medical School, where he discovered that circulating protein antigens were efficiently presented in the thymus by MHC class II-positive dendritic cells, whereas cortical epithelial cells failed to do so, despite their high MHC class II expression. Thereafter, he joined the German Cancer Research Center in Heidelberg as a principal investigator, where he became Head of the Division of Developmental Immunology in 2004. For a long time it was assumed, and then shown with T cell receptor transgenic mice, that autoreactive T cells could be deleted in the thymus. It was believed that at least some peripheral tissue-restricted antigens could be picked up by dendritic cells and presented in the thymus, resulting in central tolerance. For those organ-specific antigens that would not find their way into the thymus, it was assumed that peripheral tolerance mechanisms would take care of auto-reactivity. This hypothesis was plausible and made perfect sense. No one could imagine the existence of a particular cell type which would express all or almost all organ-specific proteins, but Bruno did. In a brilliant set of experiments he discovered that thymic medullary epithelial cells expressed a large number of antigens that had been believed to be restricted to peripheral tissues, thereby resulting in thymic deletion of T cells specific for peripheral organs. With these stunning findings Bruno provided a crucial part of the mechanistic basis for the groundbreaking observation made by the Nobel laureate Sir Peter Medawar half a century earlier in the 1950s that immunological tolerance to the body's own tissues is not inborn but rather is acquired by the developing immune system. Most importantly, Bruno's elegant studies stimulated new directions of research, such as the genetic mechanisms for promiscuous gene expression and the consequences for autoimmune diseases and cancer vaccination. In addition to that work, Bruno served as associate editor at the International Journal of Cancer for over 15 years. Here, too, he made a significant contribution to the journal's development with his expertise. Bruno was a unique friend and colleague, warmhearted and very modest, almost too modest for this world. He would listen carefully and help to solve scientific problems, but his curiosity and interests were not limited to science. In discussions and conversations he would often drift off to literature, philosophy, art, and music, especially Schubert's music, which deeply moved him. He loved to spend vacations in France together with his family, where he enjoyed French cuisine and savoir vivre. His thoughts and comments were always enlightening and never superficial. Could I choose a piece of art for him it would be Rodin's sculpture The Thinker. Bruno would have loved to continue his research and life with his family, but fate wouldn't let him. We already miss him very much. Günter J. Hämmerling Tumor Immunology Program German Cancer Research Center

MicroRNA-449a modulates medullary thymic epithelial cell differentiation

Medullary thymic epithelial cells (mTECs) ectopically express a diversity of peripheral tissue-restricted antigens (PTAs) and provide unique cues for the expansion, maturation and selection of a repertoire of functionally diverse T lymphocytes. Genetic deletion of all mature microRNAs in thymic epithelial cells (TECs) results in premature thymic involution, progressive disorganisation of the thymic epithelium, and alteration in thymic T cell lineage commitment, consequently eliciting autoimmune disorders. In the present study, we identified that microRNA-449a (miR-449a), a member of miR-449 cluster, regulated mTEC differentiation. Expression of miR-449a was induced by RANK ligand in mouse fetal thymus. In in vitro studies, overexpression of miR-449a induced thymic epithelial progenitor cells (TEPCs) differentiation into mature mTECs. Despite abundant expression of miR-449a in developing thymus, miR-449a-mutant mice exhibited normal thymic development. This might be partially due to in miR-449a-mutant thymus the up-regulation of miR-34a which shared similar seed sequence with miR-449a. However, thymic expression of miR-449/34 sponge which was able to neutralize the function of miR-449/34 family members significantly reduced the number of mature Ly51-MHCIIhi mTECs. Taken together, our data suggested that miR-449a modulated mTEC differentiation, and members of miR-34 cluster functioned redundantly to rescue miR-449a deficiency in thymus development.

The role of bone marrow promiscuous gene expression in peripheral tolerance

Abstract For the negative selection of autoreactive T cells, peripheral tissue-restricted antigens (TRAs) are ectopically expressed and presented by medullary thymic epithelial cells (mTECs). This physiological property of mTECs, termed promiscuous gene expression (pGE), is predominantly regulated by the transcription factor, autoimmune regulator (AIRE). In the periphery, pGE was also found in secondary lymphoid organs and can induce peripheral immune tolerance. Bone marrow is an important organ known to prime naïve conventional T cells, as well as being a reservoir of regulatory T cells. However, the occurrence of pGE in the bone marrow is hitherto unknown. We hypothesize that a repertoire of auto-antigens is ectopically expressed and presented in the bone marrow, which maintains the peripheral tolerance of T cells. We investigated the presence of AIRE-expressing cells in bone marrow using a transgenic reporter mouse model in which GFP is expressed under the control of the AIRE promoter. AIRE expression was detected at both the RNA and protein levels. The bone marrow-resident AIRE-expressing cells (BMACs) anatomically locate adjacent to clusters of CD4+ T cells and express high levels of CD45, MHC-II and EpCAM. Their tolerogenic characteristic was conferred by the expression of PD-L1 and lack of costimulatory molecules CD80 and CD86. Gene expression analysis showed the AIRE-dependent TRA genes expressed in BMACs differ from those expressed in mTECs. BMACs were also detected at various frequencies in patients carrying different tumor entities. Our result demonstrates that the AIRE-expressing cells which ectopically express TRAs in the bone marrow could comprise the cellular basis for the induction of peripheral T-cell tolerance.

Thymic stromal cell subsets for T cell development.

The thymus provides a specialized microenvironment in which a variety of stromal cells of both hematopoietic and non-hematopoietic origin regulate development and repertoire selection of T cells. Recent studies have been unraveling the inter- and intracellular signals and transcriptional networks for spatiotemporal regulation of development of thymic stromal cells, mainly thymic epithelial cells (TECs), and the molecular mechanisms of how different TEC subsets control T cell development and selection. TECs are classified into two functionally different subsets: cortical TECs (cTECs) and medullary TECs (mTECs). cTECs induce positive selection of diverse and functionally distinct T cells by virtue of unique antigen-processing systems, while mTECs are essential for establishing T cell tolerance via ectopic expression of peripheral tissue-restricted antigens and cooperation with dendritic cells. In addition to reviewing the role of the thymic stroma in conventional T cell development, we will discuss recently discovered novel functions of TECs in the development of unconventional T cells, such as natural killer T cells and γδT cells.

Aire-Overexpressing Dendritic Cells Induce Peripheral CD4+ T Cell Tolerance

Autoimmune regulator (Aire) can promote the ectopic expression of peripheral tissue-restricted antigens (TRAs) in thymic medullary epithelial cells (mTECs), which leads to the deletion of autoreactive T cells and consequently prevents autoimmune diseases. However, the functions of Aire in the periphery, such as in dendritic cells (DCs), remain unclear. This study’s aim was to investigate the effect of Aire-overexpressing DCs (Aire cells) on the functions of CD4+ T cells and the treatment of type 1 diabetes (T1D). We demonstrated that Aire cells upregulated the mRNA levels of the tolerance-related molecules CD73, Lag3, and FR4 and the apoptosis of CD4+ T cells in STZ-T1D mouse-derived splenocytes. Furthermore, following insulin stimulation, Aire cells decreased the number of CD4+ IFN-γ+ T cells in both STZ-T1D and WT mouse-derived splenocytes and reduced the expression levels of TCR signaling molecules (Ca2+ and p-ERK) in CD4+ T cells. We observed that Aire cells-induced CD4+ T cells could delay the development of T1D. In summary, Aire-expressing DCs inhibited TCR signaling pathways and decreased the quantity of CD4+IFN-γ+ autoreactive T cells. These data suggest a mechanism for Aire in the maintenance of peripheral immune tolerance and provide a potential method to control autoimmunity by targeting Aire.

Integrin alpha-7+ pericytes are a novel, immunologically relevant lymph node stromal subset found in mice and humans (47.6)

Abstract Within lymph nodes, non-hematopoietic stromal cells attract, arrange, and promote the survival of naïve T cells, while deleting self-reactive T cells in a non-redundant fashion. Despite these important functions, subsets are poorly characterized. One major subset (gp38-CD31- double negative, termed DN) comprises 10-15% of stroma, with transcript for relevant peripheral tissue-restricted antigens (PTAs) and Aire, yet nothing was known of their lineage, localization, phenotype, or capacity to interact with leukocytes. We addressed this through in-depth transcriptomic, protein and functional analyses of DN stroma, in comparison to 5 other stromal subsets. DNs express CCL19, CCL21, CXCL13, CXCL9, CXCL10 and other chemokines, with high levels of Flt3L, BAFF, CSF-1, TGFb family members and lymphangiogenic growth factors. Phylogenetic analysis showed DNs were similar to but distinct from fibroblastic reticular cells, with a unique integrin profile, higher contractility in culture, and a lack of IL-7 expression. In situ, we found a unique surface protein, integrin α7, which identified DNs as lymph node pericytes in the cortex and medulla. Strikingly, DNs strongly alter PTA transcription following inflammation without increasing surface expression of MHC molecules. We subsequently identified DN cells in human lymph nodes. These data identify DNs as a unique, immunologically relevant subset of fibroblastic, contractile pericytes, which we term integrin α7+ pericytes (IAPs).

The Contribution of Thymic Stromal Abnormalities to Autoimmune Disease

In essence, normal thymus function involves the production of a broad repertoire of αβT cells capable of responding to foreign antigens with low risk of autoreactivity. Thymic epithelial cells are an essential component of the thymic stromal microenvironment, promoting the growth and export of self-tolerant thymocytes. Autoimmune disease, resulting from a loss of self-tolerance, is clinically and genetically complex, and accordingly has many potential etiological origins. However, it is commonly linked to defects in the thymic epithelial microenvironment. The study of autoimmune-linked thymic stromal dysfunction has indisputably advanced our understanding of T cell tolerance; notably, a field-wide paradigm shift occurred when autoimmune regulator (Aire) was found to drive expression of a multitude of peripheral tissue-restricted antigens in medullary thymic epithelial cells. Many other associations with polygenically controlled autoimmune diseases have been reported but are more difficult to definitively dissect. Paradoxically, immunodeficiency and age-related immunosenescence are also linked with increased autoimmunity. Here we discuss the theoretical basis and the evidence gathered thus far to support these associations.

The Autoimmune Regulator AIRE in Thymoma Biology: Autoimmunity and Beyond

Thymomas are tumors of thymic epithelial cells. They associate more often than any other human tumors with various autoimmune diseases; myasthenia gravis is the commonest, occurring in 10-50% of thymoma patients, depending on the World Health Organization-defined histologic subtype. Most thymomas generate many polyclonal maturing T lymphocytes but in disorganized microenvironments Failure to induce self-tolerance may be a key factor leading to the export of potentially autoreactive CD4 progeny, thus predisposing to autoimmune diseases. Normally, the master Autoimmune Regulator promotes expression of peripheral tissue-restricted antigens such as insulin by medullary thymic epithelial cells and induction of tolerance to them. The failure of approximately 95% of thymomas to express autoimmune regulator is another feature potentially contributing to autoimmunity.

Lymph node fibroblastic reticular cells directly present peripheral tissue antigen under steady-state and inflammatory conditions

Lymph node stromal cells (LNSCs) can induce potent, antigen-specific T cell tolerance under steady-state conditions. Although expression of various peripheral tissue–restricted antigens (PTAs) and presentation to naive CD8+ T cells has been demonstrated, the stromal subsets responsible have not been identified. We report that fibroblastic reticular cells (FRCs), which reside in the T cell zone of the LN, ectopically express and directly present a model PTA to naive T cells, inducing their proliferation. However, we found that no single LNSC subset was responsible for PTA expression; rather, each subset had its own characteristic antigen display. Studies to date have concentrated on PTA presentation under steady-state conditions; however, because LNs are frequently inflammatory sites, we assessed whether inflammation altered stromal cell–T cell interactions. Strikingly, FRCs showed reduced stimulation of T cells after Toll-like receptor 3 ligation. We also characterize an LNSC subset expressing the highest levels of autoimmune regulator, which responds potently to bystander inflammation by up-regulating PTA expression. Collectively, these data show that diverse stromal cell types have evolved to constitutively express PTAs, and that exposure to viral products alters the interaction between T cells and LNSCs.

Intercellular MHC transfer between thymic epithelial and dendritic cells

Thymic dendritic cells (DC) and epithelial cells play a major role in central tolerance but their respective roles are still controversial. Epithelial cells have the unique ability to ectopically express peripheral tissue-restricted antigens conferring self-tolerance to tissues. Paradoxically, while negative selection seems to occur for some of these antigens, epithelial cells, contrary to DC, are poor negative selectors. Using a thymic epithelial cell line, we show the functional intercellular transfer of membrane material, including MHC molecules, occurring between epithelial cells. Using somatic and bone marrow chimeras, we show that this transfer occurs efficiently in vivo between epithelial cells and, in a polarized fashion, from epithelial to DC. This novel mode of transfer of MHC-associated, epithelial cell-derived self-antigens onto DC might participate to the process of negative selection in the thymic medulla.

APECED-causing mutations in AIRE reveal the functional domains of the protein

A defective form of the AIRE protein causes autoimmune destruction of target organs by disturbing the immunological tolerance of patients with a rare monogenic disease, autoimmune polyendocrinopathy (APE)-candidiasis (C)-ectodermal dystrophy (ED), APECED. Recently, experiments on knockout mice revealed that AIRE controls autoimmunity by regulating the transcription of peripheral tissue-restricted antigens in thymic medullary epithelial cells. Thus, AIRE provides a unique model for molecular studies of organ-specific autoimmunity. In order to analyze the molecular and cellular consequences of 16 disease-causing mutations in vitro, we studied the subcellular localization, transactivation capacity, homomultimerization, and complex formation of several mutant AIRE polypeptides. Most of the mutations altered the nucleus-cytoplasm distribution of AIRE and disturbed its association with nuclear dots and cytoplasmic filaments. While the PHD zinc fingers were necessary for the transactivation capacity of AIRE, other regions of AIRE also modulated this function. Consequently, most of the mutations decreased transactivation. The HSR domain was responsible for the homomultimerization activity of AIRE; all the missense mutations of the HSR and the SAND domains decreased this activity, but those in other domains did not. The AIRE protein was present in soluble high-molecular-weight complexes. Mutations in the HSR domain and deletion of PHD zinc fingers disturbed the formation of these complexes. In conclusion, we propose an in vitro model in which AIRE transactivates transcription through heteromeric molecular interactions that are regulated by homomultimerization and conditional localization of AIRE in the nucleus or in the cytoplasm.