peri-Mediterranean Region Research Articles

The potential habitat and environmental fitness change of Aedes albopictus in Western Eurasia for 2081-2100.

The range of Aedes albopictus, the most important vector mosquito in Western Eurasia is growing due to climate change. However, it is not known how it will influence the habitats occupied by the species and its environmental fitness within its future range. To study this question, the habitat characteristic of the mosquito was investigated for 2081-2100. The models suggest a notable future spread of the mosquito in the direction of Northern Europe and the parallel northward and westward shift of the southern and eastern potential occurrences of the mosquito. The models suggest a notable increase in generation numbers in the warmest quarter, which can reach 4-5 generations in the peri-Mediterranean region. However, both the joint survival rate of larvae and pupae and the number of survival days of adults in the warmest quarter exhibit decreasing values, as does the potential disappearance of the mosquito in the southern regions of Europe and Asia Minor, along with the growing atmospheric CO2 concentration-based scenarios. While in 1970-2000 Aedes albopictus mainly occupied the hot and warm summer temperate regions of Europe, the species will inhabit dominantly the cool summer temperate (oceanic) and the humid continental climate territories of North and North-Eastern Europe in 2081-2100.

The potential habitat and environmental fitness change of Aedes albopictus in Western Eurasia for 2081-2100.

The range of Aedes albopictus, the most important vector mosquito in Western Eurasia is growing due to climate change. However, it is not known how it will influence the habitats occupied by the species and its environmental fitness within its future range. To study this question, the habitat characteristic of the mosquito was investigated for 2081-2100. The models suggest a notable future spread of the mosquito in the direction of Northern Europe and the parallel northward and westward shift of the southern and eastern potential occurrences of the mosquito. The models suggest a notable increase in generation numbers in the warmest quarter, which can reach 4-5 generations in the peri-Mediterranean region. However, both the joint survival rate of larvae and pupae and the number of survival days of adults in the warmest quarter exhibit decreasing values, as does the potential disappearance of the mosquito in the southern regions of Europe and Asia Minor, along with the growing atmospheric CO2 concentration-based scenarios. While in 1970-2000 Aedes albopictus mainly occupied the hot and warm summer temperate regions of Europe, the species will inhabit dominantly the cool summer temperate (oceanic) and the humid continental climate territories of North and North-Eastern Europe in 2081-2100.

Du minéral à la structure et vice-versa : nouvelles observations méthodologiques et expérimentales sur le phénomène galet depuis les régions tropicales d’Amérique du Sud

In the field of archaeology, the pebble — a raw mineral material — is frequently subject to biased interpretations that obstruct its objective comprehension. Countering stereotypes that equate the pebble with primitiveness, this article seeks to reevaluate its technical utility. We delineate three primary methods of pebble exploitation: (1) unaltered use, wherein its mass serves functions such as a percussor or projectile, via a process of complete Affordance; (2) complete transformation into a distinct tool through the processes of Shaping or Flaking; and (3) its conceptualization as an assemblage composed of multiple sub-units, which through the interplay of Shaping, Flaking, and Affordance, constitute a matrix. This latter approach necessitates the acknowledgement that certain sections of the pebble are intentionally selected and conserved for prospective technical functions. Building on this classification, we scrutinize a range of archaeological and experimental instances from tropical regions where the pebble holds a pivotal role in toolkits. Through a techno-functional examination, we underscore the complexity of the pebble as a technical entity, thus revealing the distinctiveness of numerous cultures throughout history. This study suggests an alternative to the dominant interpretation focused on the peri-Mediterranean region, instead casting the pebble as a unique, diverse, universal, and timeless phenomenon.

First record of Macaca (Cercopithecidae, Primates) in the Middle Pleistocene of Greece

In this article, we describe an almost complete macaque mandible from the Middle Pleistocene locality Marathousa 1 in the Megalopolis Basin of southern Greece. The mandible belonged to a male individual of advanced ontogenetic age and of estimated body mass ∼13 kg. Comparative metric analysis of its teeth permits its attribution to the Barbary macaque Macaca sylvanus, a species that was geographically widely distributed in Western Eurasia during the Plio-Pleistocene. The dental dimensions of the Marathousa 1 macaque fit better within the variation of the Early Pleistocene M. s. florentina and the Middle to Late Pleistocene M. s. pliocena rather than with the extant representative M. s. sylvanus. Moreover, principal component analysis reveals a better match with M. s. pliocena. However, because no clear-cut diagnostic criteria have been defined to differentiate these European fossil subspecies, we attribute the Marathousa 1 specimen to M. s. cf. pliocena, in agreement with the chronology of the locality. Previously known only from the Early Pleistocene of Greece by some isolated teeth, this is the first record of Macaca in the Middle Pleistocene of the country and one of very few in the eastern sector of the peri-Mediterranean region. We discuss the presence of macaques in the paleolake environment of Marathousa 1, as well as their predation risks from both carnivores and hominins present at the locality.

New insight on element bioaccumulation performance of two lichen biomonitors: When morpho-chemical details mark the difference

In biomonitoring of airborne elements with native lichens, two allopatric species could be used jointly only when bioaccumulation mechanisms are the same, and differences negligible. The present study aims at (i) investigating the bioaccumulation performance for 12 elements in one-year-old lobes of Flavoparmelia caperata and Xanthoria parietina (i.e. the two lichen native biomonitors most used in the peri-Mediterranean regions) collected side-by-side on the same trees at 17 sampling sites. Both species were characterized morphologically and by X-ray diffraction analysis to evaluate specific thallus area and oxalate content, respectively. Results show that Ca and chalcophile elements (Cd, Cu, Pb and Zn) were more concentrated in F. caperata, lithophile and siderophile elements (Cr, Fe, and Ti) in X. parietina, whereas Al, Li, Mn, and Ni were accumulated in similar amounts. The outstanding content of Ca-oxalate deposits in F. caperata underlies the higher content of Ca, Cd and Pb observed in this species. On the contrary, the micro-anatomy of the upper cortex of X. parietina, which is more porous than in F. caperata, allows a higher transfer of litophile and siderophile elements. The adoption of interspecific calibration factors for biomonitoring purposes is thoroughly discussed, and the choice of using a single native species made by the most recent guidelines for biomonitoring airborne elements with lichens is fully supported.

Macaca ulna from new excavations at the Notarchirico Acheulean site (Middle Pleistocene, Venosa, southern Italy)

In this article, we describe an almost complete macaque mandible from the Middle Pleistocene locality Marathousa 1 in the Megalopolis Basin of southern Greece. The mandible belonged to a male individual of advanced ontogenetic age and of estimated body mass ∼13 kg. Comparative metric analysis of its teeth permits its attribution to the Barbary macaque Macaca sylvanus, a species that was geographically widely distributed in Western Eurasia during the Plio-Pleistocene. The dental dimensions of the Marathousa 1 macaque fit better within the variation of the Early Pleistocene M. s. florentina and the Middle to Late Pleistocene M. s. pliocena rather than with the extant representative M. s. sylvanus. Moreover, principal component analysis reveals a better match with M. s. pliocena. However, because no clear-cut diagnostic criteria have been defined to differentiate these European fossil subspecies, we attribute the Marathousa 1 specimen to M. s. cf. pliocena, in agreement with the chronology of the locality. Previously known only from the Early Pleistocene of Greece by some isolated teeth, this is the first record of Macaca in the Middle Pleistocene of the country and one of very few in the eastern sector of the peri-Mediterranean region. We discuss the presence of macaques in the paleolake environment of Marathousa 1, as well as their predation risks from both carnivores and hominins present at the locality.

Diversity and phylogeny of Paradiplozoon species (Monogenea: Diplozoidae) parasitising endemic cyprinoids in the peri-Mediterranean area, with a description of three new Paradiplozoon species

The Diplozoidae are monogenean parasites of mainly cyprinoid fishes with a unique life cycle, whereby two larvae undergo anastomosis and fuse into a single cross-shaped specimen. Paradiplozoon is the most species rich and widespread genus of the family, with a distribution range covering Eurasia and Africa; however, some areas remain underexplored and their diplozoid fauna is uncertain. In the present study, the Paradiplozoon diversity was investigated in the peri-Mediterranean region, which has the highest levels of cyprinoid diversity and endemism in Europe. A total of 36 endemic cyprinoid species were sampled from sites in north-west Africa and the southern European peninsulas and investigated for the presence of diplozoid parasites. Of five Paradiplozoon species collected, three were identified as new to science: Paradiplozoon moroccoensis n. sp. from the Moroccan endemic Luciobarbus lepineyi; Paradiplozoon ibericus n. sp. from Iberian endemic cyprinids and leuciscids and Paradiplozoon helleni n. sp. from the Greek endemic Scardinius acarnicus and Tropidophoxinellus hellenicus (descriptions provided herein). In addition, new host records for P. homoion and P. megan are presented, with the former being most prevalent in the investigated region. Phylogenetic analysis supported paraphyly of the genus Paradiplozoon, and suggests the need for a careful taxonomic re-evaluation of this genus. Furthermore, the results showed that endemic Paradiplozoon of the peri-Mediterranean do not form a monophyletic group, suggesting multiple origins of this parasite groups in different peri-Mediterranean regions.

Disentangling the evolutionary history of peri-Mediterranean cyprinids using host-specific gill monogeneans

The diversification of Mediterranean fish appears to be far more complex than could be explained by a single dispersion model. Cyprinids represent one of the most species-rich groups of freshwater fishes living in this region. The current distribution of several highly divergent cyprinid taxa is most likely the result of multiple dispersion events. Cyprinid fish serve as hosts for the highly diversified and host-specific monogenean parasites of the genus Dactylogyrus. On the assumption that the distribution of Dactylogyrus spp. reflects the biogeography and evolutionary history of their hosts, we used these parasites as an additional tool to shed new light on the evolutionary history of peri-Mediterranean cyprinids of the subfamily Barbinae. The degree of congruence between host and parasite phylogenies was investigated using 29 Dactylogyrus spp. and 34 Barbinae hosts belonging to the genera Aulopyge, Barbus and Luciobarbus. We showed that the morphological adaptation of Dactylogyrus (i.e. of the ventral bar, representing the most variable morphological character of the attachment organ) is linked with parasite phylogeny. By applying distance-based and event-based cophylogenetic approaches, we revealed a significant global coevolutionary signal. A total of 62% of individual host–parasite links contributed significantly to the coevolutionary structure evidenced between hosts of Barbus spp. and Iberian Luciobarbus spp., and their host-specific Dactylogyrus spp. The host switching of parasites was revealed as the most important coevolutionary event in the Dactylogyrus-Barbinae system in the peri-Mediterranean region. Cophylogenetic analyses and the mapping of the morphological character of the parasite attachment organ onto the phylogeny of Dactylogyrus indicate that endemic southern European Dactylogyrus spp. parasitizing cyprinids of Barbinae have multiple origins. We suggest that continental bridges connecting southern Europe and North Africa played a crucial role in the dispersion of cyprinids, affecting the distribution of their host-specific gill parasites.

Desert otters: Distribution, habitat use and feeding ecology in arid rivers of Morocco

Some of the most arid environments inhabited by the Eurasian otter (Lutra lutra) are the river systems draining the southern slopes of the High Atlas Mountains into the Sahara Desert, where we have studied otter distribution, habitat use and feeding ecology. We found signs of otter presence in 61% of 80 sampled sites. The species was widespread at intermediate elevations within the study area, being rarer at high altitudes (above 2000 m a.s.l.) and, especially, in the arid lowlands. The intensity of habitat use, estimated from spraint counts, also peaked at intermediate elevations. Otter diet, described through the analysis of 554 spraints, was dominated by fish in general (found in 97% of the spraints) and Luciobarbus barbels in particular (86% of spraints). The otter positively selected barbels of intermediate sizes (100–160 mm in length), avoiding the smallest size classes and consuming larger ones according to their availability. Our results suggest that otter may be vulnerable to the harsh environmental conditions in arid areas. This aridity-driven vulnerability is expected to increase in the area and to expand to other peri-Mediterranean regions in the future.

Distribution of Alveolina assemblages in the Ypresian (Ilerdian-Cuisian) successions from Iran and Turkey (central and western Tethys): biostratigraphic implications for regional correlation

Benthic foraminiferal assemblages dominated by Alveolina species from the Ypresian (Ilerdian-Cuisian) are studied herein from numerous localities of Iran and Turkey. From these successions, highly diversified assemblage of 58 alveolinid species are identified along with their detailed biostratigraphical application, which resulted in the recognition of eight shallow benthic zones (SBZ5-SBZ12). Our findings are based upon the distribution ranges of Alveolina from the Ilerdian-Cuisian sediments in Iran (Central Tethys) that are considered to have a strong affinity with their coeval fauna in Turkey (Western Tethys). In this study, the wide expansion ranges of Alveolina permit us to achieve a high-resolution biostratigraphy and apply the shallow benthic zones of the peri-Mediterranean region (Western Tethys) to the Ilerdian-Cuisian successions in Iran (Central Tethys). Nevertheless, the distribution of some Alveolina species, even the zonalmarkers consisting of Glomalveolina lepidula, Alveolina ellipsoidalis, A. pisiformis, A. laxa, A. subpyrenaica, A. varians, A. fornasinii and A. canavarii are found occurring at younger stratigraphic levels in Iran and/or Turkey than in the western European shallow marine deposits.

THE FIRST RECORD OF NEMKOVELLA DAGUINI (NEUMANN, 1958) FROM THE MIDDLE-UPPER EOCENE OF OMAN (ARABIAN PENINSULA) AND MEGHALAYA (INDIAN SUBCONTINENT) AND ITS SIGNIFICANCE IN TETHYAN CORRELATIONS AND PALEOBIOGEOGRAPHY

Nemkovella daguini (Neumann, 1958) is a small-sized orthophragminid species previously reported from the Lutetian to lower Priabonian shelf deposits of the peri-Mediterranean region (Western Tethys). This species, originally established from the Aquitaine Basin (France), differs significantly from typical nemkovellas and other orthophragminids by having isolated adauxiliary and orbitoidal chamberlets that progressively give rise to the formation of typical annular chambers in the neanic stage. We record here for the first time this species from the lower Priabonian Tahwah Formation in the Arabian Peninsula and from the transitional middle-upper Eocene Prang Formation in Meghalaya (India), giving a detailed description and biometry. This expands the geographic range of N. daguini to the Eastern Tethys, allowing us to provide an enhanced scheme for the correlation of peri-Mediterranean deposits with those from the South Asia. In previous studies the majority of the larger benthic foraminiferal (LBF) fauna from this region were considered to belong to the Indo-Pacific bioprovince. The LBF in Tahwah Formation, on the other hand, are here considered to have greater affinity with those of Western Tethys based on the occurrence of Heterostegina reticulata, Nummulites hormoensis, Assilina gr. schwageri-alpina, and Silvestriella tetraedra. The occurrence of Pellatispira in this unit, represented by at least two species, shows Indo-Pacific influence in Oman.

Reticulate Nummulites (N. fabianii Linage) and Age of the Pellatispira-Beds of the Drazinda Formation, Sulaiman Range, Pakistan

The Eocene shallow marine Pellatispira-beds in the upper part of the Drazinda Formation represent the latest phase of Cenozoic Tethyan marine deposition in the Sulaiman Range, West Pakistan. The unit consists of stratigraphically important taxa as Heterostegina,Silvestriella, Pellatispira, a new Baculogypsina (possibly ancestral to modern Baculogypsina) and reticulate Nummulites implying a latest middle to late Eocene (late Bartonian-Priabonian) age. A more precise age of the unit requires the biometric study of reticulate Nummulites, the evolutionary scheme of which is better known from the peri-Mediterranean region in the Tethys. This group, which was subdivided into a series of successive chrono-species based on the biometry of inner cross-diameter of proloculus and changes in the types of granulation/reticulation on the test surface in the late Eocene-late Oligocene interval, appears to have a significant biostratigraphic potential for a high-resolution biostratigraphy in the peri-Mediterranean region (Western Tethys). The reticulate Nummulites in two samples from Rakhi Nala and Zinda Pir, ZP22 and RNB10, were studied and compared with those from the peri-Mediterranean region. The isolated specimens have a weak surface granulation externally, a distinct small umbonal granule (pile) and typical reticulation. The samples ZP22 and RNB10 from Zinda Pir and and Rakhi Nala sections have an average inner cross diameter of proloculus of 152.0 and 153.0 μm respectively. The reticulate Nummulites in both samples are assigned to N. hormoensis, a chrono-species characteristic for the shallow benthic zone (SBZ 18), referable to latest Bartonian-early Priabonian time interval. Since Heterostegina in peri-Mediterranean region and in Pakistan belongs to different lineages, a correlation of N. hormoensis in the studied samples with the wellestablished evolutionary scheme of Heterostegina reticulata and H.armenica lineages from the Western Tethys was not possible.

Paleocene orthophragminids from the Lakadong Limestone, Mawmluh Quarry section, Meghalaya (Shillong, NE India): implications for the regional geology and paleobiogeography

Abstract. The late Paleocene orthophragminids, hitherto poorly known from the Himalayan foreland basins, are studied from the Lakadong Limestone in Meghalaya, northeastern India, in order to establish a systematic, biostratigraphic, and paleobiogeographical framework for them in the eastern Tethys. In the Mawmluh Quarry section (MQS) on the Shillong Plateau, to the southeast of Tibet, orthophragminids are associated with typical Paleocene orbitoidiform taxa endemic to the Indian subcontinent, i.e., Lakadongia Matsumaru & Jauhri (= Setia Ferràndez-Cañadell) and Orbitosiphon Rao, and various species of alveolinids, miscellaneids, and rotaliids, characterizing the Shallow Benthic Zones (SBZ) 3 and 4. The orthophragminids belong to two lineages of the genus Orbitoclypeus Silvestri: O. schopeni (Checchia-Rispoli) and O. multiplicatus (Gümbel), both well known from the peri-Mediterranean region and Europe (western Tethys). The latter species is identified here for the first time from the eastern Tethys. Previous records of the genus Discocyclina Gümbel from the Lakadong Limestone actually correspond to misidentified Orbitoclypeus; this implies that the late Paleocene orthophragminid assemblages from Meghalaya and eastern Tethys were less diverse than in the western Tethys. The lineage of Orbitoclypeus schopeni in the lower part of the Lakadong Limestone (SBZ 3) is identified as O. schopeni cf. ramaraoi based on the morphometry of a few specimens, whereas in the upper part (SBZ 4) it corresponds to a transitional development stage between O. schopeni ramaraoi and O. schopeni neumannae (with average Dmean values ranging between 192 and 199 µm). The embryon diameters of O. multiplicatus, recorded only in SBZ 4, range between 300 and 319 µm on average, corresponding to transitional development stages of O. multiplicatus haymanaensis and O. multiplicatus multiplicatus. Our data, along with a review of previous Paleocene and Eocene records from India and Pakistan, suggest that Orbitoclypeus is the only orthophragminid in the Paleocene of the eastern Tethys, whereas Discocyclina first appears in early Eocene times, being mainly represented by endemic taxa confined to the Indian subcontinent. Facies change in the MQS from a marine to continental setting within SBZ 4 corresponds to the oldest record from the Indian plate in the Paleogene, which may be linked to the flexural uplift of the passive margin of the Indian plate, marking the onset of the collision of the Indian and Eurasian plates.

Foraminiferan-calcimicrobial benthic communities from Upper Cretaceous shallow-water carbonates of Albania (Kruja Zone)

From the Kruja Zone of Albania, shallow-water carbonates assigned to the lower Campanian are described and grouped into six microfacies types of shallow subtidal to intertidal depositional settings. The limestones display internal layering suggestive of microbial fabrics with abundance of nubeculariid foraminifera, incertae sedis Thaumatoporella Pia, and subordinate calcimicrobes of possible cyanobacterial origin: Gahkumella Zaninetti, Girvanella sp., and Decastronema kotori (Radoičić). The nubeculariid morphotypes with ornamented tests and microbial coatings reveal some kind of mutualistic relationship comparable to Late Palaeozoic–Mesozoic Tubiphytes Maslov and Crescentiella Senowbari-Daryan et al. The present study expands our knowledge on the micropalaeontological characteristics of the Late Cretaceous “Decastronema–Thaumatoporella association” widespread in carbonate platforms of the peri-Mediterranean region. Our findings indicate that nubeculariids may have played an important binding role in Late Cretaceous peritidal laminated limestones.

Early Eocene orthophragminids (Foraminifera) from the type-locality of Discocyclina ranikotensis Davies, 1927, Thal, NW Himalayas, Pakistan: insights into the orthophragminid palaeobiogeography

The study of isolated orthophragminid tests at the type-locality of Discocyclina ranikotensis Davies from the Patala Formation in Thal area (Upper Indus Basin, NW Pakistan) revealed new associations of genera Discocyclina Gümbel, and Orbitoclypeus Silvestri, not yet reported from eastern Tethys. We demonstrate that D. ranikotensis Davies, the species identity of which has been a subject of controversy in earlier works, is a valid species endemic at least to the Indo-Pakistan region. D. ranikotensis is associated with Discocyclina archiaci (Schlumberger), and very sparse Orbitoclypeus schopeni (Checchia-Rispoli), both species being key taxa for orthophragminid zonation in peri-Mediterranean Tethys. We have also identified a few discocyclinid specimens suggesting possible connection to western Tethys species D. fortisi, and a few specimens showing affinity to D. dispansa. The assemblages of orthophragminids suggest orthophragminid zone (OZ) 3 according to western Tethyan zonation scheme. The occurrence of D. archiaci extends the geographical distribution of this taxon to eastern Tethys, which hitherto was only known from peri-Mediterranean region. The typical western Tethyan asterocyclinids, nemkovellids and ribbed orbitoclypeids, first appearing at or around Paleocene/Eocene boundary (OZ 1B/2, SBZ4/5), have not been identified.

Anatolia: A long-time plant refuge area documented by pollen records over the last 23 million years

North and South Anatolia areas are today refuge areas for plants that were previously widespread in the European and Mediterranean regions. Thirteen well-dated Anatolian pollen records spanning the last 23million years allow for a reconstruction of the history of several plants that have disappeared from this region or are surviving in this refuge area. For example, in this study we show that Cedrus is an ancient element of the Anatolian flora. Tropical elements lived in this area until the early Pliocene. Subtropical elements became extinct in the Middle to Late Pleistocene, except for Glyptostrobus (Taxodiaceae swamp tree) and Carya (Juglandaceae, a warm-temperate tree), which may have persisted until recently in this area. In addition, a comparison of palaeofloras coming from different locations ranging from 36–38°N and 40–42°N latitudinal intervals in the northeastern Mediterranean (including Anatolian coastal regions) with those from Europe and North Africa has been done. This shows that the North and South Anatolia areas appear to have been separate refuges for thermophilous–hygrophilous plants since the early Pliocene (ca. 5million years). Today, Anatolia is a plant refuge area for warm-temperate species, which have almost completely (Zelkova) or completely (Pterocarya, Liquidambar, Parrotia persica) disappeared from other European and peri-Mediterranean regions. Taxodiaceae swamp ecosystems (Glyptostrobus) might have recently disappeared from the southern Black Sea shoreline. New pollen data from Anatolia also allowed us in calibrating the timing of floristic extinctions at a continental scale and helped us in clarifying the reasons of the different floral extinctions and dynamics (breaking up and shifting) in the refuge areas. Thanks to global warming there is a potential for the survival and expansion of thermophilous species (Pterocarya fraxinifolia, Zelkova abelica, Liquidambar orientalis) in this area.

Next-generation sequencing, phylogenetic signal and comparative mitogenomic analyses in Metacrangonyctidae (Amphipoda: Crustacea).

BackgroundComparative mitochondrial genomic analyses are rare among crustaceans below the family or genus level. The obliged subterranean crustacean amphipods of the family Metacrangonyctidae, found from the Hispaniola (Antilles) to the Middle East, including the Canary Islands and the peri-Mediterranean region, have an evolutionary history and peculiar biogeography that can respond to Tethyan vicariance. Indeed, recent phylogenetic analysis using all protein-coding mitochondrial sequences and one nuclear ribosomal gene have lent support to this hypothesis (Bauzà-Ribot et al. 2012).ResultsWe present the analyses of mitochondrial genome sequences of 21 metacrangonyctids in the genera Metacrangonyx and Longipodacrangonyx, covering the entire geographical range of the family. Most mitogenomes were attained by next-generation sequencing techniques using long-PCR fragments sequenced by Roche FLX/454 or GS Junior pyro-sequencing, obtaining a coverage depth per nucleotide of up to 281×. All mitogenomes were AT-rich and included the usual 37 genes of the metazoan mitochondrial genome, but showed a unique derived gene order not matched in any other amphipod mitogenome. We compare and discuss features such as strand bias, phylogenetic informativeness, non-synonymous/synonymous substitution rates and other mitogenomic characteristics, including ribosomal and transfer RNAs annotation and structure.ConclusionsNext-generation sequencing of pooled long-PCR amplicons can help to rapidly generate mitogenomic information of a high number of related species to be used in phylogenetic and genomic evolutionary studies. The mitogenomes of the Metacrangonyctidae have the usual characteristics of the metazoan mitogenomes (circular molecules of 15,000-16,000 bp, coding for 13 protein genes, 22 tRNAs and two ribosomal genes) and show a conserved gene order with several rearrangements with respect to the presumed Pancrustacean ground pattern. Strand nucleotide bias appears to be reversed with respect to the condition displayed in the majority of crustacean mitogenomes since metacrangonyctids show a GC-skew at the (+) and (-) strands; this feature has been reported also in the few mitogenomes of Isopoda (Peracarida) known thus far. The features of the rRNAs, tRNAs and sequence motifs of the control region of the Metacrangonyctidae are similar to those of the few crustaceans studied at present.Electronic supplementary materialThe online version of this article (doi:10.1186/1471-2164-15-566) contains supplementary material, which is available to authorized users.

Early Bartonian orthophragminids (Foraminiferida) from Reineche Limestone, north African platform, Tunisia: taxonomy and paleobiogeographic implications

The orthophragminids in lower Bartonian Reineche Limestone member, a fossiliferous shallow-marine unit exposed in Cap Bon peninsula in Tunisia, are represented by 17 species assigned to Discocyclinidae Galloway 1928 and Orbitoclypeidae Brönnimann 1946. These taxa, associated with nummulitids and alveolinids, belong to the lineages of Discocyclina Gümbel 1870, Nemkovella, 1987, Orbitoclypeus Silvestri 1907, and Asterocyclina Gümbel 1870, described for the first time from north Africa lying at the southern margin of Tethyan ocean during Paleogene. We identified Nemkovella evae, previously not recorded in upper Lutetian/lower Bartonian and younger Eocene deposits of northern Tethyan platforms, and erected a new subspecies, N. evae reinechensis n. ssp. A comparison of Reineche orthophraminids, assigned to orthophragmines zone (OZ) 12 and shallow benthic zone (SBZ 17), to the well-described coeval assemblages at northern Tethyan platforms in Italy, Hungary, Turkey, and to those in Kutch Basin in the Indian subcontinent suggests that some species are confined to certain paleogeographic domains. Orbitoclypeus haynesi, the only orbitoclypeid and the most abundant orthophragminid in lower Bartonian deposits in Kutch, appears to be the most common orbitoclypeid in Reineche Limestone. In Europe, this species is not known and is replaced by Orbitoclypeus varians, the most common orbitoclypeid in middle Eocene of central Europe. Both species occur in varying proportions in marine successions in Turkey. Asterocyclina sireli, identified so far only in Turkey, occurs in Reineche Limestone and in lower Bartonian deposits in Kutch. This species is recorded for the first time in the Indian subcontinent. Relying on present study, as well as our recent studies in Kutch Basin, we conclude that the generic and specific diversity of orthophragminids decreases eastward from the peri-Mediterranean region to Indian subcontinent and to the western Pacific.

First evidence of Macaca sylvanus (Primates, Cercopithecidae) from the Late Pleistocene of Lezetxiki II cave (Basque Country, Spain)

In this article, we describe an almost complete macaque mandible from the Middle Pleistocene locality Marathousa 1 in the Megalopolis Basin of southern Greece. The mandible belonged to a male individual of advanced ontogenetic age and of estimated body mass ∼13 kg. Comparative metric analysis of its teeth permits its attribution to the Barbary macaque Macaca sylvanus, a species that was geographically widely distributed in Western Eurasia during the Plio-Pleistocene. The dental dimensions of the Marathousa 1 macaque fit better within the variation of the Early Pleistocene M. s. florentina and the Middle to Late Pleistocene M. s. pliocena rather than with the extant representative M. s. sylvanus. Moreover, principal component analysis reveals a better match with M. s. pliocena. However, because no clear-cut diagnostic criteria have been defined to differentiate these European fossil subspecies, we attribute the Marathousa 1 specimen to M. s. cf. pliocena, in agreement with the chronology of the locality. Previously known only from the Early Pleistocene of Greece by some isolated teeth, this is the first record of Macaca in the Middle Pleistocene of the country and one of very few in the eastern sector of the peri-Mediterranean region. We discuss the presence of macaques in the paleolake environment of Marathousa 1, as well as their predation risks from both carnivores and hominins present at the locality.

Origin and spread of a common deletion causing mucolipidosis type II: insights from patterns of haplotypic diversity

Mucolipidosis II (ML II alpha/beta), or I-cell disease, is a rare genetic disease in which activity of the uridine diphosphate (UDP)-N-acetylglucosamine:lysosomal enzyme N-acetylglucosamine-1-phosphotransferase (GlcNAc-phosphotransferase) is absent. GlcNAc-phosphotransferase is a multimeric enzyme encoded by two genes, GNPTAB and GNPTG. A spectrum of mutations in GNPTAB has been recently reported to cause ML II alpha/beta. Most of these mutations were found to be private or rare. However, the mutation c.3503_3504delTC has been detected among Israeli and Palestinian Arab-Muslim, Turkish, Canadian, Italian, Portuguese, Irish traveller and US patients. We analysed 44 patients who were either homozygous or compound heterozygous for this deletion (22 Italians, 8 Arab-Muslims, 1 Turk, 3 Argentineans, 3 Brazilians, 2 Irish travellers and 5 Portuguese) and 16 carriers (15 Canadians and 1 Italian) for three intragenic polymorphisms: c.-41_-39delGGC, c.18G>A and c.1932A>G as well as two microsatellite markers flanking the GNPTAB gene (D12S1607 and D12S1727). We identified a common haplotype in all chromosomes bearing the c.3503_3504delTC mutation. In summary, we showed that patients carrying the c.3503_3504delTC deletion presented with a common haplotype, which implies a common origin of this mutation. Additionally, the level of diversity observed at the most distant locus indicates that the mutation is relatively ancient (around 2063 years old), and the geographical distribution further suggests that it probably arose in a peri-Mediterranean region.