Pelagic Systems Research Articles

Beyond the threshold - Different accumulation of organochlorine compounds in common dolphins (Delphinus delphis) inhabiting continental and insular ecosystems in the Northeast Atlantic

Assessing persistent organic pollutant (POP) levels across regions helps evaluate environmental health and determine ecological risks. As an apex predator, the common dolphin (Delphinus delphis) serves as an excellent model for understanding POP exposure and impact in Eastern North Atlantic marine ecosystems. In this study, we collected biopsy samples of common dolphins in two ecoregions, the pelagic system of Madeira Island (Portugal) (n = 30) and in the continental shelf of Northwest Portugal (n = 14) to analyse organochlorine concentrations (PCBs, DDTs, Mirex, HCB) from their blubber. For both ecoregions, PCBs comprised the largest proportion of the total measured organochlorines (60% in Madeira Island and 85% in Northwest Portugal), followed by DDTs, and lastly, HCB. Considerable differences in the organochlorine profile were identified between samples from Madeira and Northwest Portugal, with common dolphins showing higher PCB loads in Northwest Portugal (53 ± 37 μg g−1 lw) compared to Madeira Island (11 ± 4.8 μg g −1 lw). The high levels of PCBs found in individuals from mainland Portugal – reaching values up to 140 μg g−1 lw – are some of the highest reported for the species worldwide, considerably exceeding toxicity thresholds. This is of particular concern as they may be potentially affecting important physiological processes of the animals. These results highlight the poor habitat quality in one of the studied regions, with potential impacts on ecosystem health, while offering valuable insights into the population structure of a species that remains understudied for effective management and conservation.

Phytoplankton community composition as a driver of annual autochthonous organic carbon dynamics in the northern coastal Baltic Sea

Phytoplankton are the major primary producers in the pelagic system. They greatly influence biogeochemical cycles but little is known about the importance of shifting phytoplankton community composition for carbon dynamics. This study investigates the impact of seasonal changes in coastal phytoplankton communities on pelagic carbon fluxes. A field sampling campaign, covering an annual cycle in primary production, was conducted to assess the seasonal changes of phytoplankton communities and relevant organic carbon parameters in the coastal Baltic Sea. The monitoring frequency ranged from 1 to 3 wk, adapted to match the seasonal phytoplankton blooms. In addition, sediment traps were deployed to determine the particulate carbon and nutrient export to the seafloor in every season. We found that the phytoplankton biomass during the spring bloom was as high as 550 µg C l-1 and was dominated by diatom species (88% of total phytoplankton biomass). In comparison, the more species-rich summer bloom reached a combined maximum biomass of 236 µg C l-1. However, the highest export flux of particulate organic carbon was found in the middle of August (561 mmol C m-2 d-1) and, not as expected, around the spring bloom in May (226 mmol C m-2 d-1), suggesting a high potential for carbon recycling within the pelagic food web rather than being exported to the seafloor or advected laterally. Our study emphasizes the importance of keystone species and diversity for carbon transport processes in marine coastal ecosystems and highlights complex relationships between phytoplankton biomass production, community composition and carbon dynamics.

Assessing the potential economic effects of mesopelagic fisheries as a novel source of fishmeal

AbstractThe continuous growth of the aquaculture industry implies increased demand for efficient sources of aquafeed, such as fishmeal. Pelagic fish are a desirable source of fishmeal due to their high nutritional content. Nevertheless, several pelagic stocks that have been exploited extensively for fishmeal production face ecological limits due to commercial exploitation, and the aquaculture industry is now seeking novel, efficient, and sustainable sources of aquafeed. The mesopelagic zone, an ecosystem with many scientific uncertainties, is being considered as a potential source for fishmeal, largely owing to the abundance of mesopelagic fish and their robust nutritional profile. However, both the ecological and economic viability of commercial exploitation of mesopelagic fish are not yet well understood. To understand the conditions that would make such an endeavor economically viable in the context of global fishmeal production systems, we use a bioeconomic model that assesses the economic consequences of including mesopelagic fish as a fishmeal source. Through simulations, we assess the economic implications of this hypothetical mesopelagic fishery on major pelagic fishmeal production systems. The mesopelagic fishery can be economically profitable for harvesters, and its addition to global fishmeal production reduces fishmeal market price, thus making it more accessible to aquaculture farmers and less profitable for pelagic fishers. While this may reduce fishing pressure on pelagic forage‐fish stocks, the implications of commercial exploitation of mesopelagic on key ecosystem services remain a concern.

Divergent responses of pelagic and benthic fish body-size structure to remoteness and protection from humans.

Animal body-size variation influences multiple processes in marine ecosystems, but habitat heterogeneity has prevented a comprehensive assessment of size across pelagic (midwater) and benthic (seabed) systems along anthropic gradients. In this work, we derive fish size indicators from 17,411 stereo baited-video deployments to test for differences between pelagic and benthic responses to remoteness from human pressures and effectiveness of marine protected areas (MPAs). From records of 823,849 individual fish, we report divergent responses between systems, with pelagic size structure more profoundly eroded near human markets than benthic size structure, signifying greater vulnerability of pelagic systems to human pressure. Effective protection of benthic size structure can be achieved through MPAs placed near markets, thereby contributing to benthic habitat restoration and the recovery of associated fishes. By contrast, recovery of the world's largest and most endangered fishes in pelagic systems requires the creation of highly protected areas in remote locations, including on the High Seas, where protection efforts lag.

Drivers of cyanotoxin and taste-and-odor compound presence within the benthic algae of human-disturbed rivers

Freshwater benthic algae form complex mat matrices that can confer ecosystem benefits but also produce harmful cyanotoxins and nuisance taste-and-odor (T&O) compounds. Despite intensive study of the response of pelagic systems to anthropogenic change, the environmental factors controlling toxin presence in benthic mats remain uncertain. Here, we present a unique dataset from a rapidly urbanizing community (Kansas City, USA) that spans environmental, toxicological, taxonomic, and genomic indicators to identify the prevalence of three cyanotoxins (microcystin, anatoxin-a, and saxitoxin) and two T&O compounds (geosmin and 2-methylisoborneol). Thereafter, we construct a random forest model informed by game theory to assess underlying drivers. Microcystin (11.9 ± 11.6 µg/m2), a liver toxin linked to animal fatalities, and geosmin (0.67 ± 0.67 µg/m2), a costly-to-treat malodorous compound, were the most abundant compounds and were present in 100 % of samples, irrespective of land use or environmental conditions. Anatoxin-a (8.1 ± 11.6 µg/m2) and saxitoxin (0.18 ± 0.39 µg/m2), while not always detected, showed a systematic tradeoff in their relative importance with season, an observation not previously reported in the literature. Our model indicates that microcystin concentrations were greatest where microcystin-producing genes were present, whereas geosmin concentrations were high in the absence of geosmin-producing genes. Together, these results suggest that benthic mats produce microcystin in situ but that geosmin production may occur ex situ with its presence in mats attributable to adsorption by organic matter. Our study broadens the awareness of benthic cyanobacteria as a source of harmful and nuisance metabolites and highlights the importance of benthic monitoring for sustaining water quality standards in rivers.

Trait-based indicators of resource selection by albacore tuna in the California Current Large Marine Ecosystem

As global climate change reorganizes marine ecosystems, understanding how predators will respond to variable prey resources is critical to forecasting future community dynamics. Prey traits that affect the foraging process and recur across unrelated taxa offer a means to better anticipate predator resource use by simplifying complex foraging dynamics. Here we compare taxonomic and trait-based indicators of resource use and selection for albacore tuna (Thunnus alalunga), a commercially valuable pelagic predator undergoing climate-driven range shifts. We synthesized datasets from 2005 to 2019 to evaluate diets of albacore tuna in relation to prey availability estimates from shipboard surveys in the California Current Large Marine Ecosystem. Analyses with these data reveal that albacore and trawl surveys sample different aspects of the pelagic system, with albacore consuming a subset of taxa identified within trawls. Albacore consistently selected coastal prey that are schooling, undefended, silvered and countershaded, and have high energy density — suggesting that ecological mechanisms driving albacore foraging outcomes may be conserved across time and space. Ecological traits mediating predator-prey interactions consistently distinguished albacore diets from assemblages sampled by trawls across years and regions. We demonstrate that a traits-based approach simplifies taxonomically diverse predator-prey interactions and may be a valuable tool to facilitate predictions of prey resource use in changing environments.

The Western Channel Observatory: a century of physical, chemical and biological data compiled from pelagic and benthic habitats in the western English Channel

Abstract. The Western Channel Observatory (WCO) comprises a series of pelagic, benthic and atmospheric sampling sites within 40 km of Plymouth, UK, that have been sampled by the Plymouth institutes on a regular basis since 1903. This longevity of recording and the high frequency of observations provide a unique combination of data; for example temperature data were first collected in 1903, and the reference station L4, where nearly 400 planktonic taxa have been enumerated, has been sampled on a weekly basis since 1988. While the component datasets have been archived, here we provide the first summary database bringing together a wide suite of the observations. This provides monthly average values of some of the key pelagic and benthic measurements for the inshore site L4 (50∘15.00′ N, 4∘13.02′ W; approx. depth 55 m), the offshore site E1 (50∘02.00′ N, 4∘22.00′ W; approx. depth 75 m) and the intermediate L5 site (50∘10.80′ N, 4∘18.00′ W; approx. depth 58 m). In brief, these data include the following: water temperature (from 1903); macronutrients (from 1934); dissolved inorganic carbon and total alkalinity (from 2008); methane and nitrous oxide (from 2011); chlorophyll a (from 1992); high-performance liquid chromatography (HPLC)-derived pigments (from 1999); <20 µm plankton by flow cytometry, including bacteria (8 functional groups from 2007); phytoplankton by microscopy (6 functional groups from 1992); microplankton and mesozooplankton from FlowCam (6 groups from 2012); Noctiluca sp. dinoflagellate (from 1997); mesozooplankton by microscopy (8 groups from 1988); Calanus helgolandicus egg production rates (from 1992); fish larvae from the Young Fish Trawl survey (4 groups from 1924); benthic macrofauna (4 groups from 2008); demersal fish (19 families from 2008); blue shark, Prionace glauca (from 1958); and 16S alpha diversity for sediment and water column (from 2012). These data have varying coverage with respect to time and depth resolution. The metadata tables describe each dataset and provide pointers to the source data and other related Western Channel Observatory datasets and outputs not compiled here. We provide summaries of the main trends in seasonality and some major climate-related shifts that have been revealed over the last century. The data are available from the Data Archive for Seabed Species and Habitats (DASSH): https://doi.org/10.17031/645110fb81749 (McEvoy and Atkinson, 2023). Making these data fully accessible and including units of both abundance and biomass will stimulate a variety of uptakes. These may include uses as an educational resource for projects, for models and budgets, for the analysis of seasonality and long-term change in a coupled benthic–pelagic system, or for supporting UK and north-eastern Atlantic policy and management.

Marine latitudinal diversity gradients are generally absent in intertidal ecosystems.

Current latitudinal diversity gradient (LDG) meta-analyses have failed to distinguish one of the most widespread marine habitats, the intertidal zone, as a separate system despite it having unique abiotic challenges and spatially compressed stress gradients that affect the distribution and abundance of resident species. We address this issue by revisiting published literature and datasets on LDGs since 1911 to explore LDG patterns and their strengths in intertidal benthic, subtidal benthic, and pelagic realms and discuss the importance of recognizing intertidal ecosystems as distinct. Rocky shorelines were the most studied intertidal ecosystem encompassing 64.2% of intertidal LDG studies, and 62.9% of studies focused on assemblage composition, while the remaining 37.1% of studies were taxa specific. While our analyses confirmed LDGs in subtidal benthic and pelagic realms, with a decrease in richness toward the poles, we found no consistent intertidal LDGs in any ocean or coastline across hemispheres or biodiversity unit. Analyzing intertidal and subtidal zones as separate systems increased the strength of subtidal benthic LDGs relative to analyses combining these systems. We demonstrate that in intertidal ecosystems across oceans in both hemispheres, a latitudinal decrease in species richness is not readily apparent, which stands in contrast with significant LDG patterns found in the subtidal realm. Intertidal habitat heterogeneity, regional environmental variability and biological interactions can create species-rich hot spots independent of latitude, which may functionally outweigh a typical latitudinal decline in species richness. Although previous work has shown weaker LDGs in benthic than pelagic systems, we demonstrate that this is caused by combining subtidal and intertidal benthic ecosystems into a single benthic category. Thus, we propose that subtidal and intertidal ecosystems cannot be combined into one entity as the physical and biological parameters controlling ecosystem processes are vastly different, even among intertidal ecosystems. Thus, the intertidal zone offers a unique model system in which hypotheses can be further tested to better understand the complex processes underlying LDGs.

Enrichment potential of carbon and metals through biogeochemical pools of particulate matter and organisms of the coastal and continental margin

Loads of trace metals and organic materials on the coastal and shelf waters of the Sunda Shelf from vast terrestrial input will affect the flux dynamic, especially through biogeochemical pools. The Sunda Shelf’s biogeochemical pools (i.e., the reservoirs or storage spaces for materials such as carbon and trace metals) vary from coastal to pelagic systems. In this context, such pools can represent suspended particulate matter, sediment, water column, and trophic levels or communities of organisms. We hypothesized that the enrichment of carbon and trace metals would follow the nitrogen stable isotope enrichment. Based on the hypothesis, this study has the following purposes: 1) to assess whether trace metals and δ13C enrichment follows the increase in trophic level; 2) to assess the correlation between trace metals and carbon or nitrogen stable isotope (δ13C or δ15N) enrichment; and 3) to elucidate the potential of carbon and metals flow through the biogeochemical pools. We analyzed the isotope and trace metals properties of the biogeochemical pool of seagrass, suspended particulate matter (SPM), mollusk, and fish. We compared the trophic level value of each pool, its carbon isotope, and metal concentration. The result shows that the sources of carbon for consumers (i.e., mollusks and fish) are seagrass, particulate organic matter (POM), and SPM. SPM presents a plausible reservoir of carbon and nitrogen that can be utilized by mollusks. In addition, the potential sources of carbon and nitrogen for fish could be seagrass, POM, epiphytes, SPM, or even mollusks. Carbon enrichment occurred from the primary producers to the higher trophic levels. Nonetheless, solely cadmium (Cd) and iron (Fe) demonstrated a notable adverse association with δ13C and δ15N, correspondingly. This result suggests that the dispersion of these trace metals likely aligns with the trophic level.

Top-down structuring of freshwater bacterial communities by mixotrophic flagellates

Mixotrophic and heterotrophic protists hold a key position in aquatic microbial food webs. Whereas they can account for the bulk of bacterivory in pelagic systems, the potential structuring effect of these consumers on bacterial communities is far from clear. We conducted short-term grazing experiments to test for the overall impact on bacterial community structure and possible prey preferences of phagotrophic protists. The protist taxa selected for this study include three mixotrophic flagellates, comprising two obligate- and one facultative mixotroph, and one phagoheterotrophic flagellate lacking phototrophic capacity. Bacterioplankton from seven different lakes were enriched and used to represent semi-natural prey communities. Our study demonstrated protist strain specific impacts on bacterial community composition linked to grazing. The three mixotrophs had variable impacts on bacterial communities where the two obligate mixotrophs exhibited lower grazing rates, while showing a tendency to promote higher bacterial diversity. The phagoheterotroph displayed the highest grazing rates and structured the bacterial communities via apparent selective grazing. Consistent selectivity trends were observed throughout the experiments, such as the apparent avoidance of all flagellates of Actinobacteria, and high grazing on dominant Burkholderiales taxa. However, there was no consistent “fingerprint” of mixotrophic grazing on prey communities, but the structuring impact rather seemed to depend on the trophic mode of the individual protist taxa, i.e. their dependence on phototrophy vs. phagotrophy. Our findings highlight the differential structuring impact of protist taxa on bacterial communities which may have important ecological implications, for example during periodic dominance of obligate mixotrophic bacterivores in changing lake ecosystems.

Self-Sustaining of Post-Disaster Pelagic Island Energy Systems With Mobile Multi-Energy Storages

Extreme natural hazards may damage the pelagic island energy system (PIES) integrating distribution systems, cold storages and desalination stations, resulting in the electric service interruption, stored food deterioration, and freshwater shortage. To alleviate the energy demand of residents as much as possible before the arrival of mainland emergency resources, a novel self-sustaining strategy of post-disaster PIESs with mobile multi-energy storages is proposed in this paper. First, mobile multi-energy storages are used to delivery electricity, ice, and water among stations to increase the resource supply resilience. Their differences in resource delivery time and transportation energy consumption are modelled. On this basis, mobile multi-energy storages are coordinated with diesel generators, cold storages, desalination devices, network reconfiguration, and islanded grid merging for self-sustaining of post-disaster PIESs. The utility loss evaluation model of the common electric load shedding, food deterioration, and freshwater shortage is established, in order to better reflect and respond to the needs of residents. Robust optimization methods are also used to address the uncertainties of the renewable generation, multi-type load demand, and especially energy transmission (i.e. traffic congestion time and line repair time), making the restoration strategy reliable. Finally, case studies verified the superiority of the proposed strategy.

Distribution and diversity of the sympatric macroalgae of the pelagic Sargassum horneri in the Yellow and East China seas

The massive pelagic Sargassum horneri (Turner) C. Agardh, 1820 has increasingly occurred in the Yellow Sea and East China Sea. Significant intrusion of floating S. horneri into the southwestern Yellow Sea, the major bloom region of the green tides, has aroused speculations on the blooming mechanism and confounded concurrent prevention practices of green tides. The floating S. horneri were surveyed and sampled throughout its distributional range to study the diversity and abundance of sympatric macroalgae, including the epiphytes and non-epiphytes. The study showed that both types of macroalgae commonly coexisted with the pelagic S. horneri and showed distinct distribution patterns. The non-epiphytic green macroalgae, primarily Ulva prolifera, were free floating with S. horneri. They were initiated from the nearshore water of Jiangsu in late April followed by a rapid accumulation and expansion as the green tide developed. The non-epiphytic green algae were mostly restricted in the western coast of southern YS with biomass decreasing evidently toward offshore. Four species in Phaeophyta were commonly detected epiphytic on the pelagic S. horneri in the survey region and Proselachista taeniiformis was dominant. Unlike the co-occurring green algae, the species composition and abundance of epiphytes have no significant variation in the distributional range of the pelagic S. horneri. High frequency (80%) and abundance (0.25 ± 0.17 gEpi/gSar) of epiphytes indicated significant biological interactions with their hosts and ecological functions of this pelagic system, which deserves further investigation.

Distribution Patterns of Benthic Protist Communities Depending on Depth Revealed by Environmental Sequencing-From the Sublittoral to the Deep Sea.

Protists are key components of the microbial food web in marine pelagic systems because they link algal and bacterial production to higher trophic levels. However, their functioning and bathymetric distribution in benthic deep-sea ecosystems are still only poorly understood. However, biogeographical patterns of communities can be coupled to the functioning of ecosystems and are therefore important to understand ecological and evolutionary processes. In this study, we investigated the diversity and distribution of benthic protist communities from the sublittoral down to the deep seafloor (50-2000 m) around three islands of the Azores in the North Atlantic Ocean. Using amplicon sequencing of the V9 region (18S rDNA) of 21 samples, we found that protist community compositions from different depths were significantly different. Three assemblages were separated along the following depths: 50 m, 150-500 m and 1000-2000 m, which indicate that deep-sea areas surrounding islands might act as isolating barriers for benthic protist species. A limited gene flow between the communities could favor speciation processes, leading to the unique protist communities found at the different investigated islands.

Reduced efficiency of pelagic–benthic coupling in the Arctic deep sea during lower ice cover

Pelagic–benthic coupling describes the connection between surface-water production and seafloor habitats via energy, nutrient and mass exchange. Massive ice loss and warming in the poorly studied Arctic Chukchi Borderland are hypothesized to affect this coupling. The strength of pelagic–benthic coupling was compared between 2 years varying in climate settings, 2005 and 2016, based on δ13C and δ15N stable isotopes of food-web end-members and pelagic and deep-sea benthic consumers. Considerably higher isotopic niche overlap and generally shorter isotopic distance were found between pelagic and benthic food web components in 2005 than in 2016, suggesting weaker coupling in the latter, low-ice year. δ15N values indicated more refractory food consumed by benthos in 2016 and fresher food reaching the seafloor in 2005. Higher δ13C values of zooplankton indirectly suggested a higher contribution of ice algae in 2005 than 2016. The difference in pelagic–benthic coupling between these years is consistent with higher energy retention within the pelagic system, perhaps due to strong stratification in the Amerasian Basin in the recent decade. Weaker coupling to the benthos can be expected to continue with ice loss in the study area, perhaps reducing benthic biomass and remineralization capacity; monitoring of the area is needed to confirm this prediction.

Coastal mesozooplankton respond to decadal environmental changes via community restructuring

AbstractLong‐term ecological research has revealed the impact of climate on marine ecosystems at multiple time scales. Changes in the pelagic system have been detected at the LTER‐MC site in the Gulf of Naples (Tyrrhenian Sea, western Mediterranean) since 1984. Here we analyzed the time series to determine whether zooplankton had significantly changed over the three decades 1984–2015. In addition to the seasonal cycle as the main mode of temporal variability, we observed long‐term trends in the functional groups and species. Copepods, the most abundant group, declined over the years owing to a decrease in the abundance of Acartia clausi, Centropages typicus, the Paracalanus parvus complex, and Oithona spp. Increasing trends were observed for strict carnivores (chaetognaths) and typical filter feeders (cladocerans, appendicularians, and thaliaceans); the latter may be linked to a higher density of <5 μm phytoplankton. Two main temporal shifts were detected: (i) in 1985–87, similarly to the regime shifts registered in other basins of the Northern Hemisphere, and (ii) after 2011, likely related to local atmospheric forcing. The disappearance or decrease in some neritic copepods and the increased abundance of typical offshore species seem to reflect the enhanced influence of the open Tyrrhenian waters at the sampling site. Despite these changes, no significant trends were detected in the total zooplankton abundance and overall composition, which indicates restructuring within the whole community. These results underline the need to examine the entire zooplankton diversity spectrum and improve our knowledge of their ecological traits to detect and interpret long‐term variability.

Variability in phytoplankton shape dominance in marine pelagic systems: prevalence of different adaptive strategies in the eastern Arabian Sea during the winter monsoon

Phytoplankton communities from pelagic systems were assessed to explore the potential of using commonly used traits (such as cell geometry and taxa) as ecological function indicators from the data generated during the winter monsoon in the eastern Arabian Sea (AS). Altogether, data from two oceanic, i.e., convective mixing influenced non-oligotrophic northeastern-AS (NEAS-O) and Rossby wave-influenced oligotrophic southeastern-AS (SEAS-O) and one coastal (NEAS-C) cruises were utilized to decipher the ecological inferences. Overall phytoplankton shapes showed a high level of redundancy by selecting only a few dominant shapes (5 of 22 shapes), though taxonomic diversity was rich (164 species). The taxonomic and morphological approach adopted revealed high species and shape diversity in NEAS-O than in high-abundance NEAS-C and low-abundance SEAS-O. Also, the shape diversity and dominant shapes (cylinder, elliptic-prism, and prism-on-parallelogram) remained the same in oceans than NEAS-C where combined (cylinder + 2 half-sphere) and simple (elliptic-prism) shapes dominated. Additionally, the Rossby-wave front and its reminiscence in SEAS-O and sea-surface-temperature fronts in NEAS-C favored simple and combine shaped phytoplankton, respectively. The morphological properties assessment revealed that the dominant shapes adapted the strategy to conserve the optimal surface-to-volume ratio (S:V) irrespective of changes in greatest-axial-linear-dimension (GALD) in NEAS-O and SEAS-O but not in NEAS-C. However, the dominant shapes in the NEAS-O and SEAS-O opted for high S:V with low GALD and low S:V with high GALD, respectively, while high S:V with no relation with GALD in NEAS-C suggests the prevalence of different adaptive strategies to cope with the respective hydrographic conditions, particularly nutrient availability.

From the Sunlit to the Aphotic Zone: Assembly Mechanisms and Co-Occurrence Patterns of Protistan-Bacterial Microbiotas in the Western Pacific Ocean.

We know little about the assembly processes and association patterns of microbial communities below the photic zone. In marine pelagic systems, there are insufficient observational data regarding why and how the microbial assemblies and associations vary from photic to aphotic zones. In this study, we investigated size-fractionated oceanic microbiotas, specifically free-living (FL; 0.22 to 3 μm) and particle-associated (PA; >3 μm) bacteria and protists (0.22 to 200 μm) collected from the surface to 2,000 m in the western Pacific Ocean, to see how assembly mechanisms and association patterns changed from photic to aphotic zones. Taxonomic analysis revealed a distinct community composition between photic and aphotic zones that was largely driven by biotic associations rather than abiotic factors. Aphotic community co-occurrence was less widespread and robust than its photic counterparts, and biotic associations were crucial in microbial co-occurrence, having a higher influence on photic than aphotic co-occurrences. The decrease in biotic associations and the increase in dispersal limitation from the photic to the aphotic zone affect the deterministic-stochastic balance, leading to a more stochastic-process-driven community assembly for all three microbial groups in the aphotic zone. Our findings significantly contribute to our understanding of how and why microbial assembly and co-occurrence vary from photic to aphotic zones, offering insight into the dynamics of the protistan-bacterial microbiota in the western Pacific's photic and aphotic zones. IMPORTANCE We know little about the assembly processes and association patterns of microbial communities below the photic zone in marine pelagic systems. We discovered that community assembly processes differed between photic and aphotic zones, with all three microbial groups studied (protists and FL and PA bacteria) being more influenced by stochastic processes than in the photic zone. The decrease in organismic associations and the increase in dispersal limitation from the photic to the aphotic zone both have an impact on the deterministic-stochastic balance, resulting in a more stochastic process-driven community assembly for all three microbial groups in the aphotic zone. Our findings significantly contribute to the understanding of how and why microbial assembly and co-occurrence change between photic and aphotic zones, offering insight into the dynamics of the protist-bacteria microbiota in the western Pacific oceans.

Submesoscale variability of subsurface chlorophyll-a across eddy-driven fronts by glider observations

Reflecting the local dynamic state of the pelagic system, subsurface chlorophyll maxima (SCM) are ubiquitous in the global ocean. Here, a high-resolution glider survey was conducted in the South China Sea to study the physical and biogeochemical change across the periphery of a mesoscale cyclonic eddy. We found intense vertical dispersion of SCM associated with enhanced diapycnal mixing at the frontal zones on the edge of the eddy. Submesoscale processes were found to play important roles within the eddy-driven fronts despite the general impact of the mesoscale Ekman upwelling and downwelling. Our results also suggested that wind-driven overturns at the frontal zone could result in a stronger gravitational instability at the northern edge of the eddy leading to an enhanced vertical mixing of subsurface Chl-a. However, turbulent mixing induced by symmetric instability with energy extracted from the lateral buoyancy gradient at the northeastern edge of the eddy had caused a divergence of the subsurface chlorophyll-a at the frontal zone. Our results provide direct evidence of the interaction between mesoscale and submesoscale processes at the oceanic frontal zone. These findings also call for tight cooperation between multidisciplinary observational and modeling approaches for a better understanding of the SCM variability and associated biogeochemical transformations at transient oceanic fronts.

Microbiome network in the pelagic and benthic offshore systems of the northern Adriatic Sea (Mediterranean Sea)

Because of their recognized global importance, there is now the urgent need to map diversity and distribution patterns of marine microbial communities. Even if available studies provided some advances in the understanding the biogeographical patterns of marine microbiomes at the global scale, their degree of plasticity at the local scale it is still underexplored, and functional implications still need to be dissected. In this scenario here we provide a synoptical study on the microbiomes of the water column and surface sediments from 19 sites in a 130 km2 area located 13.5 km afar from the coast in the North-Western Adriatic Sea (Italy), providing the finest-scale mapping of marine microbiomes in the Mediterranean Sea. Pelagic and benthic microbiomes in the study area showed sector specific-patterns and distinct assemblage structures, corresponding to specific variations in the microbiome network structure. While maintaining a balanced structure in terms of potential ecosystem services (e.g., hydrocarbon degradation and nutrient cycling), sector-specific patterns of over-abundant modules—and taxa—were defined, with the South sector (the closest to the coast) characterized by microbial groups of terrestrial origins, both in the pelagic and the benthic realms. By the granular assessment of the marine microbiome changes at the local scale, we have been able to describe, to our knowledge at the first time, the integration of terrestrial microorganisms in the marine microbiome networks, as a possible natural process characterizing eutrophic coastal area. This raises the question about the biological threshold for terrestrial microorganisms to be admitted in the marine microbiome networks, without altering the ecological balance.

A database of zooplankton abundance in the Atlantic sectors of the Southern and sub-Arctic Oceans

SummaryScientific sampling of zooplankton in the Atlantic sector of the Southern Ocean has been undertaken since the 1920s, but few analyzed datasets are available to the research community. We provide a database of standardized data derived from samples collected by Bongo nets in this sector between 1996 and 2013, amounting to almost 94,000 individual records. The study region contains some of the highest levels of pelagic biomass in the Southern Ocean and is also undergoing rapid ocean warming and changing seasonality in sea-ice distribution. Data from a single expedition to the sub-Arctic where the same sampling methodology was used are also included. Atlantic water is an increasing influence in that region, as is the prevalence of boreal plankton taxa within Arctic plankton communities. These data will be of value in supporting studies assessing the impacts of climate change on the structure and function of polar pelagic systems.