Patterns Of Population Subdivision Research Articles

Going with the Flow: Testing the Role of Habitat Isolation among Three Ecologically Divergent Darter Species

Variation in habitat across the landscape can limit dispersal between populations and influence the diversity and degree of genetic structure of populations. This effect may be larger in small aquatic species with low vagility, specific habitat requirements, and that inhabit lotic systems where dispersal may be biased by the unidirectional movement of water downstream. Darters offer a unique perspective to understand these influences because they have variable life histories and habitat requirements, and evidence suggests that certain life history characters may affect gene flow. Data were collected from a combination of microsatellite loci from 825 individuals to compare genetic structure and differentiation of three species of darters (Ammocrypta beanii, Etheostoma swaini, and Percina nigrofasciata) with differences in life histories and habitat requirements in the Pearl River basin. Our analyses reveal low, but interesting, patterns of population subdivision. Genetic subdivision among populations was highest for E. swaini, intermediate for P. nigrofasciata, and lowest for A. beanii. This pattern suggests a difference in dispersal, influenced by the variation in available habitat required for each species. Further investigations are warranted for small, benthic, and especially threatened species in the Pearl River basin as the main channel has undergone a significant shift in geomorphology and habitat diversity since the construction of reservoirs and low-head dams along its course.

Genetic variability and population structure of grey wolf (Canis lupus) in Serbia

Results of previous morphometric and genetic analyses of grey wolf (Canis lupus L.) population from Serbia indicated different patterns of population subdivision. In order to explore population structure, level of genetic variability, genetic drift, inbreeding and signals of bottleneck for grey wolves from Serbia, we applied highly polymorphic genetic markers (microsatellites). Obtained data are valuable in determination of conservation units and creation of appropriate management plans. We have amplified 18 highly polymorphic microsatellites, in a total sample of 75 grey wolves, from different localities across Serbia and multilocus genotypes were analyzed using appropriate software. Observed values of the basic genetic parameters (H O = 0.69; H E = 0.75) indicated moderate level of genetic variability, similar to genetic variability in other populations belonging to the Dinaric-Balkan population of grey wolf. In STRUCTURE analysis, although ΔK was estimated to be at first peak K = 2, and second peak K = 4, CLUMPAK analyses showed that there’s no structuring for any of assumed K, and therefore the population of grey wolf from Serbia may be considered as one continuous population and treated as one conservation unit in future management plans. Signals of bottleneck haven’t been observed (Wilcoxon test two phase mutation model p = 0.247; and stepwise mutation model p = 0.815).

Selection on the wing in Heliconius butterflies

AsbtractTo what extent population structure favours the establishment of new phenotypes within a species remains a fundamental question in evolutionary studies. By reducing gene flow, habitat fragmentation is a major factor shaping the genetic structuring of populations, favouring isolation of small populations in which drift may rapidly change frequencies of new variants. When these variants provide advantages to individuals, the combined effect of selection and drift can lead to rapid shifts in phenotypes. In a study published in BMC Genetics, Albuquerque de Moura et al. asked whether such a general pattern of population structure can be observed in Heliconius species, which could have strong implication in the evolution of colour pattern diversification in these butterflies. In this commentary we discuss the potential roles of these three processes (drift, selection and dispersal) on the evolution of Heliconius wing patterns in regard to the findings of a common fine-scale population structure within the co-mimetic species H. melpomene and H. erato. Indeed, a general pattern of population subdivision in the history of these two species may have provoked the major phenotypical shifts observed in their wing colour patterns. The suggestion that coupled environmental pressures (counter-selection of dispersal and selection on co-evolved traits) could be responsible for identical genetic differentiation profiles in H. erato and H. melpomene clearly merits further investigations using both detailed population genetic (including landscape genetic) and ecological studies.

Temporal variation of the population structure and genetic diversity of Farfantepenaeus notialis assessed by allozyme loci

Population genetic studies carried out on penaeid shrimps have disclosed different patterns of population subdivision, revealing new aspects of shrimp biology as well as the effects of historical contingency molding those patterns. However, the stability of observed allele frequencies over time still remains untested. The objective of this article is to show the analysis of the temporal variation of allozymes in a shrimp species inhabiting Cuba which proves that the genetic structure of this species could significantly change in time. The study involves four populations of Farfantepenaeus notialis sampled in a period of 8 years. The significant statistics obtained from partitions observed in 1995 were not detected in 2003 (as suggested by AMOVA and F(ST)), whereas temporal genetic differentiation and heterozygosity became highly significant. The results strongly suggest that the effect of migrations could be the cause for the loss of F. notialis genetic structure in 2003. It is therefore imperative to call attention on the vulnerability of these populations when facing unstable environmental and habitat conditions.

Patterns of Population Subdivision and Gene Flow in Three Sympatric Natricine Snakes

Patterns of population subdivision and gene flow were quantified using allozymes in three sympatric species of natricine snakes from the island region of western Lake Erie. Species share similar population history (post-Pleistocene range expansion followed by subdivision into island and mainland demes) and life-history characteristics. However, species differ in anticipated rates of gene flow because of differences in body size and degree to which they use aquatic habitats. Significant population subdivision was present in all three species, and isolation by distance was evident in water snakes (Nerodia sipedon) and, to a lesser degree, in brown snakes (Storeria dekayi) but not in garter snakes (Thamnophis sirtalis). As predicted, water snakes, the largest and most aquatic of the three species, showed significantly less population structure (lower values of FST) than did the smaller and more terrestrial garter snakes and brown snakes. Furthermore, variance in locus-specific estimates of FST was highest for brown snakes, intermediate for garter snakes, and lowest for water snakes. Estimates of FST obtained in this study are similar in magnitude to those reported for other snake species that have undergone post-Pleistocene range expansion but are lower than those reported for some southern U.S. species that may have experienced longer periods of isolation.

Patterns of population subdivision, gene flow and genetic variability in the African wild dog (Lycaon pictus).

African wild dogs are large, highly mobile carnivores that are known to disperse over considerable distances and are rare throughout much of their geographical range. Consequently, genetic variation within and differentiation between geographically separated populations is predicted to be minimal. We determined the genetic diversity of mitochondrial DNA (mtDNA) control region sequences and microsatellite loci in seven populations of African wild dogs. Analysis of mtDNA nucleotide diversity suggests that, historically, wild dog populations have been small relative to other large carnivores. However, population declines due to recent habitat loss have not caused a dramatic reduction in genetic diversity. We found one historical and eight recent mtDNA genotypes in 280 individuals that defined two highly divergent clades. In contrast to a previous, more limited, mtDNA analysis, sequences from these clades are not geographically restricted to eastern or southern African populations. Rather, we found a large admixture zone spanning populations from Botswana, Zimbabwe and south-eastern Tanzania. Mitochondrial and microsatellite differentiation between populations was significant and unique mtDNA genotypes and alleles characterized the populations. However, gene flow estimates (Nm) based on microsatellite data were generally greater than one migrant per generation. In contrast, gene flow estimates based on the mtDNA control region were lower than expected given differences in the mode of inheritance of mitochondrial and nuclear markers which suggests a male bias in long-distance dispersal.

Concordance between dispersal and mitochondrial gene flow: isolation by distance in a tropical teleost, Lates calcarifer (Australian barramundi)

Patterns of population subdivision and the relationship between gene flow and geographical distance in the tropical estuarine fish Lates calcarifer (Centropomidae) were investigated using mtDNA control region sequences. Sixty-three putative haplotypes were resolved from a total of 270 individuals from nine localities within three geographical regions spanning the north Australian coastline. Despite a continuous estuarine distribution throughout the sampled range, no haplotypes were shared among regions. However, within regions, common haplotypes were often shared among localities. Both sequence-based (average ΦST=0.328) and haplotype-based (average Φ ST=0.182) population subdivision analyses indicated strong geographical structuring. Depending on the method of calculation, geographical distance explained either 79 per cent (sequence-based) or 23 per cent (haplotype-based) of the variation in mitochondrial gene flow. Such relationships suggest that genetic differentiation of L. calcarifer has been generated via isolation-by-distance, possibly in a stepping-stone fashion. This pattern of genetic structure is concordant with expectations based on the life history of L. calcarifer and direct studies of its dispersal patterns. Mitochondrial DNA variation, although generally in agreement with patterns of allozyme variation, detected population subdivision at smaller spatial scales. Our analysis of mtDNA variation in L. calcarifer confirms that population genetic models can detect population structure of not only evolutionary significance but also of demographic significance. Further, it demonstrates the power of inferring such structure from hypervariable markers, which correspond to small effective population sizes.

Concordance between dispersal and mitochondrial gene flow: isolation by distance in a tropical teleost, Lates calcarifer (Australian barramundi)

Patterns of population subdivision and the relationship between gene flow and geographical distance in the tropical estuarine fish Lates calcarifer (Centropomidae) were investigated using mtDNA control region sequences. Sixty-three putative haplotypes were resolved from a total of 270 individuals from nine localities within three geographical regions spanning the north Australian coastline. Despite a continuous estuarine distribution throughout the sampled range, no haplotypes were shared among regions. However, within regions, common haplotypes were often shared among localities. Both sequence-based (average ΦST=0.328) and haplotype-based (average Φ ST=0.182) population subdivision analyses indicated strong geographical structuring. Depending on the method of calculation, geographical distance explained either 79 per cent (sequence-based) or 23 per cent (haplotype-based) of the variation in mitochondrial gene flow. Such relationships suggest that genetic differentiation of L. calcarifer has been generated via isolation-by-distance, possibly in a stepping-stone fashion. This pattern of genetic structure is concordant with expectations based on the life history of L. calcarifer and direct studies of its dispersal patterns. Mitochondrial DNA variation, although generally in agreement with patterns of allozyme variation, detected population subdivision at smaller spatial scales. Our analysis of mtDNA variation in L. calcarifer confirms that population genetic models can detect population structure of not only evolutionary significance but also of demographic significance. Further, it demonstrates the power of inferring such structure from hypervariable markers, which correspond to small effective population sizes.

Molecules versus morphology: the detection of selection acting on morphological characters along a cline in Drosophila melanogaster.

This work examines the nature of north-south clinal variation in morphological characters in Drosophila melanogaster. Isofemale lines were established from flies collected along a transect extending from Winnipeg, Manitoba (Canada) to Tampa Bay, Florida (U.S.A.). Offspring from different lines within each location were then cultured under standardized conditions and used to examine phenotypic variation in seven morphological characters along the cline. In addition, allozyme variation at seven polymorphic loci was examined for the same set of clinal populations. Scutellum length and wing length show the strongest clinal trends. Clinal variation is nonmonotonic, with larger flies in the middle latitudes and smaller flies in the north and south. This result contrasts with other studies which have shown monotonic clines. Patterns of population subdivision were different for the different characters. This implies that there are different selective forces acting on the different morphological characters. Based on a comparison of morphological and molecular population subdivision for adjacent populations it is inferred that natural selection is operating to maintain a high level of population subdivision for wing width and the first principal component between one of the sets of populations. A combined approach using molecules and morphology may provide an alternative to retrospective selection analysis for detecting selection in nature.

Genetic variation in subdivided populations and conservation genetics.

The genetic differentiation of populations is usually studied by using the equilibrium theory of Wright's infinite island model. In practice, however, populations are not always in equilibrium, and the number of subpopulations is often very small. To get some insight into the dynamics of genetic differentiation of these populations, numerical computations are conducted about the expected gene diversities within and between subpopulations by using the finite island model. It is shown that the equilibrium values of gene diversities (HS and HT) and the coefficient of genetic differentiation (GST) depend on the pattern of population subdivision as well as on migration and that the GST value is always smaller than that for the infinite island model. When the number of migrants per subpopulation per generation is greater than 1, the equilibrium values of HS and HT are close to those for panmictic populations, as noted by previous authors. However, the values of HS, HT, and GST in transient populations depend on the pattern of population subdivision, and it may take a long time for them to reach the 95 per cent range of the equilibrium values. The implications of the results obtained for the conservation of genetic variability in small populations are discussed. It is argued that any single principle should not be imposed as a general guideline for the management of small populations.