Patterns Of Species Research Articles

Stable isotopes analysis combined with X-ray absorption spectroscopy reveal the fate of organic waste-borne copper and zinc in amended soils

Copper (Cu) and zinc (Zn), two potentially toxic trace elements, are commonly abundant in organic wastes (OWs) recycled in soils as fertilizer. Yet current knowledge on the long-term behavior and fate of Cu and Zn in soil following OW spreading is scant. We addressed this issue by studying the fate of OW-borne Cu and Zn in amended soils from four different long-term field experiments. By combining the stable isotope analysis and X-ray absorption spectroscopy, we identified changes in Cu and Zn concentrations, speciation and isotopic compositions in the amended soils only when OW had been applied at high rates over long periods. Under these conditions, we highlighted that: (i) all OW-derived Cu and Zn had accumulated in the topsoil layer regardless of the soil and OW type; (ii) the amended soil isotopic signatures were the result of the mixing of OW-borne and natural Cu and Zn; and (iii) Cu and Zn exhibited distinct speciation patterns in amended soils. Indeed, the unprecedented persistence of OW-borne crystallized Cu(I)-sulfide in the amended soils contrasted with the complete transformation of pig slurry-borne nanosized Zn-sulfide or household compost-derived amorphous Zn phosphate and Zn complexed by organic matter.

Phylogeography and species distribution modeling unveil unnoticed Pliocene diversity: the case of a montane Iberian bush-cricket, Antaxius spinibrachius (Orthoptera: Tettigoniidae)

Abstract The geographic distribution and systematics of many groups of insects are still understudied across large geographic areas of the Iberian Peninsula. This lack of knowledge and the fact that many species have a complex evolutionary history due to the existence of “refugia within refugia” have hindered the taxonomic description of the true biodiversity in the Iberian Peninsula. Here, we discuss the evolutionary history of a flightless Iberian bush-cricket Antaxius spinibrachius (Fischer, 1853) using 1 nuclear and 2 mitochondrial markers. We applied species distribution modeling to design sampling strategies in climatically favorable areas and to detect missing isolated populations or unknown lineages. Following the species distribution modeled using all of the presence records available, we discovered 4 new isolated populations in Sierra Madrona, Serra de São Mamede, Sierra de Montánchez, and Sierra de la Demanda. Phylogenetic analyses recovered 2 major Pliocene lineages with a north–south geographic speciation pattern in the Iberian Peninsula. This north–south vicariant event split the common ancestor of these species on either side of the Tagus Valley, probably associated with the Pliocene climate change and the reorganization of paleobasins of the western Iberian Peninsula during the Miocene–Pliocene. We described the southern Iberian Plateau lineage of Antaxius as a new species of bush-cricket based on phylogenetic and morphological evidence, Antaxius oretanus sp. nov. We assessed the conservation status of the new species as “VU B2ab(iii,v)” under the IUCN criteria.

Speciation and Antifungal Susceptibility pattern of urinary Candida isolates from catheterized patients admitted in ICU in a Tertiary Care Hospital, Theni

Speciation and Antifungal Susceptibility pattern of urinary Candida isolates from catheterized patients admitted in ICU in a Tertiary Care Hospital, Theni

The rise and fall of notoungulates: How Andean uplift, available land area, competition, and depredation driven its diversification dynamics

Unraveling the biotic and abiotic drivers likely influencing clades’ diversification dynamics (differential speciation and extinction rates) is crucial for understanding life on Earth. Here, we present a comprehensive analysis of the diversification dynamics of notoungulates (Mammalia: Notoungulata), the most diverse and widespread Cenozoic herbivore mammals that evolved in South America (SA) but are now entirely extinct. Employing fossil occurrences restricted to the southern part of the SA and a Bayesian framework, we examined the historical speciation and extinction rates across all notoungulates, suborders, and three body size categories and tested whether these dynamics could be driven by biotic (e.g., diversity dependence, competition) and abiotic (e.g., Andean uplift and temperature changes) factors. Our findings reveal significant variability in diversification rates over time and groups driven by biotic and abiotic factors. We observed an increase in notoungulate speciation rates correlated with lower group self-diversity, likely related to limited environmental productivity and more extensive emerged continental areas that can provide increased environmental and ecological heterogeneity. In contrast, elevated extinction rates were correlated with intensified Andean uplift events, which can trigger landscape modifications and the arrival of placental carnivores after the Great American Biotic Interchange, probably due to notoungulate vulnerability to novel predation pressures. Furthermore, sparassodont diversity appears to increase speciation and extinction rates of notoungulates, although the direct mechanism relating them remains uncertain. The heterogeneity in the observed patterns of speciation and extinction across distinct size categories and taxonomic clades provides valuable perspectives on how ancient global and regional changes impacted the diversification dynamics of mammals and underscores the intricate interplay between environmental changes and biological interactions in shaping the evolution of life on Earth.

Analyzing the Evolutionary History of Plant Groups using Molecular Phylogenetics, with a Focus on Understanding Speciation and Diversification Patterns

Analyzing the Evolutionary History of Plant Groups using Molecular Phylogenetics, with a Focus on Understanding Speciation and Diversification Patterns

From Europe to Caucasus: cryptic diversity and unexpected biogeographic history of a Western Palaearctic moss-inhabiting flea beetle (Chrysomelidae: Mniophila)

Abstract The turbulent Tertiary and Quaternary history of Europe and the Ponto-Caucasus has had a strong impact on its biota, resulting in unusual patterns of speciation, diversification, and dispersal. Our study reveals the Late-Tertiary diversification and biogeographic history of Mniophila, a Western Palaearctic endemic moss-inhabiting flightless flea beetle distributed across Europe and the Ponto-Caucasus. We assembled samples across the whole range of the genus except Crimea. Based on a molecular phylogenetic analysis, we found that the diversification of Mniophila started in the Balkan Peninsula, and was followed by at least two independent colonizations of other parts of Europe. The Ponto-Caucasian species are all descendants of a single colonization from the Balkans, followed by species’ radiation. The Mniophila beetles are, therefore, one of the first-known cases of the colonization of the Caucasus from Europe. We integrated our DNA data with morphology, allowing us to uncover the cryptic diversity of Mniophila and to revise its European species. We describe Mniophila haveli sp. nov. from the Carpathians and Balkans, M. wroblewskiiWańkowicz, 1880 from Central Europe and the Balkans is restored as a valid species, and M. bosnica Apfelbeck, 1914 is newly recognized as a Dinaric endemic. We reveal an exceedingly large distribution range for M. muscorum (Koch, 1803), which is unusual for a flightless beetle.

Understanding Species Boundaries that Arise from Complex Histories: Gene Flow Across the Speciation Continuum in the Spotted Whiptail Lizards.

Gene flow between diverging lineages challenges the resolution of species boundaries and the understanding of evolutionary history in recent radiations. Here, we integrate phylogenetic and coalescent tools to resolve reticulate patterns of diversification and use a perspective focused on evolutionary mechanisms to distinguish interspecific and intraspecific taxonomic variation. We use this approach to resolve the systematics for one of the most intensively studied but difficult to understand groups of reptiles: the spotted whiptail lizards of the genus Aspidoscelis (A. gularis complex). Whiptails contain the largest number of unisexual species known within any vertebrate group and the spotted whiptail complex has played a key role in the generation of this diversity through hybrid speciation. Understanding lineage boundaries and the evolutionary history of divergence and reticulation within this group is therefore key to understanding the generation of unisexual diversity in whiptails. Despite this importance, long-standing confusion about their systematics has impeded understanding of which gonochoristic species have contributed to the formation of unisexual lineages. Using reduced representation genomic data, we resolve patterns of divergence and gene flow within the spotted whiptails and clarify patterns of hybrid speciation. We find evidence that biogeographically structured ecological and environmental variation has been important in morphological and genetic diversification, as well as the maintenance of species boundaries in this system. Our study elucidates how gene flow among lineages and the continuous nature of speciation can bias the practice of species delimitation and lead taxonomists operating under different frameworks to different conclusions (here we propose that a two species arrangement best reflects our current understanding). In doing so, this study provides conceptual and methodological insights into approaches to resolving diversification patterns and species boundaries in rapid radiations with complex histories, as well as long-standing taxonomic challenges in the field of systematic biology.

Species and Speciation in the Termite-Cultivated Fungus Termitomyces

Termitomyces is a genus of basidiomycete fungi cultivated by termites of the subfamily Macrotermitinae. This symbiosis originated in central Africa, and subsequently, the fungus-growing termites have colonized almost the entire African continent including Madagascar as well as significant parts of Asia. Around 40 species of Termitomyces have been described based on morphology of the sexual fruit bodies, which are associated with some 330 species of fungus-growing termites distributed over 11 genera. However, the total number of fungal species may be higher as not all species regularly produce mushrooms, and morphological variation does not seem to be a reliable criterion for species delimitation in this group. In this study we estimated the total number of species based on ITS-barcode criteria and assessed host specificity and geographic differentiation to infer patterns of speciation. We estimated the total number of phylogenetic species using two methods of DNA sequence-based species delimitation; Automatic Barcode Gap Discovery (ABGD) and the Generalized Mixed Yule Coalescent (GMYC) model on a large dataset of over 1,500 ITS sequences from laboratory cultures, fungarium specimens and the public database NCBI Genbank. This resulted in an estimated 87 species hypotheses using ABGD and 94 species hypotheses using the GMYC model. A phylogenetic reconstruction was performed on representative sequences of the 87 species hypotheses identified by ABGD (the most conservative estimate) constrained by a well-supported phylogeny based on whole-genome data to address host specificity and geographical differentiation. Five main clades were recovered which generally were associated with species of one or two host genera, except for samples collected from the genera Microtermes and Ancistrotermes, which formed two separate non-sister clades. We did not find any evidence for long-term host fidelity as would be expected for species with strict uniparental vertical symbiont transmission. We found strict geographic separation between African and Asian species of Termitomyces and infer a minimum of seven inter-continental migrations. We show that epigeous fruiting of the T. microcarpus group has a single evolutionary origin in Africa and that fruiting in species of this group likely is induced by the fungus rather than by the host-termite species. In contrast, fruiting in the symbionts of some species of Microtermes and Macrotermes may be suppressed by the host-termite species, since mushrooms of certain fungal species are found when those species are associated with some termite-host genera, but never when associated with other host genera. We discuss some examples of incongruence between morphological and phylogenetic species concepts and give suggestions to improve the taxonomy of the genus Termitomyces.

Studying the Influence of Soil Characteristics on Selenium Distribution in Bas-Chellif Soils Algeria and Predicting Speciation Patterns

Studying the Influence of Soil Characteristics on Selenium Distribution in Bas-Chellif Soils Algeria and Predicting Speciation Patterns

Effect of salinity on arsenic uptake, biotransformation, and time-dependent speciation pattern by Sargassum species

The arsenic (As) content of seaweed has been extensively studied due to its toxicological concerns. As a primary producer, seaweed plays a vital role in the biochemical cycling of As in marine environments. Several studies have focused on the growth and behavior of seaweed under a salinity gradient; however, information related to the impact of salinity on As uptake, biotransformation mechanism, and time-dependent speciation patterns of these plants is limited. This study aimed to investigate the temporal effects of salinity on these factors in seaweed. Three seaweed species, Sargassum fusiforme, Sargassum thunbergii, and Sargassum horneri, were maintained in a 1% Provasoli-enriched seawater medium for 14 d under 5‰, 15‰, 25‰, and 34‰ salinities. The results revealed that the high salinity media promoted a rapid uptake of As by all three species. Arsenic accumulation inside the cell approached 100% within seven days of culture for S. thunbergii, irrespective of the salinity content of the media. In addition, As(V) biotransformation and release by S. fusiforme and S. thunbergii were time-dependent, while S. horneri released dimethylarsinic acid (DMAA) from day 3 of the culture. All seaweed species showed methylation of As(V) to DMAA during the culture period. Furthermore, S. thunbergii released DMAA when As(V) was completely depleted from the culture media, whereas the release by S. fusiforme and S. horneri was relatively earlier than that of S. thunbergii. S. horneri showed minimal tolerance to low salinity, as the cells revealed significant damage. Based on the results of this study, a conceptual model was developed that demonstrated the effects of salinity on As uptake and the biotransformation mechanism of seaweed.

Speciation patterns of zinc in ocean particles.

Different particulate zinc forms ultimately affect marine biological productivity.

Southern Africa's Great Escarpment as an amphitheater of climate-driven diversification and a buffer against future climate change in bats.

Hosting 1460 plant and 126 vertebrate endemic species, the Great Escarpment (hereafter, Escarpment) forms a semi-circular "amphitheater" of mountains girdling southern Africa from arid west to temperate east. Since arid and temperate biota are usually studied separately, earlier studies overlooked the biogeographical importance of the Escarpment as a whole. Bats disperse more widely than other mammalian taxa, with related species and intraspecific lineages occupying both arid and temperate highlands of the Escarpment, providing an excellent model to address this knowledge gap. We investigated patterns of speciation and micro-endemism from modeled past, present, and future distributions in six clades of southern African bats from three families (Rhinolophidae, Cistugidae, and Vespertilionidae) having different crown ages (Pleistocene to Miocene) and biome affiliations (temperate to arid). We estimated mtDNA relaxed clock dates of key divergence events across the six clades in relation both to biogeographical features and patterns of phenotypic variation in crania, bacula and echolocation calls. In horseshoe bats (Rhinolophidae), both the western and eastern "arms" of the Escarpment have facilitated dispersals from the Afrotropics into southern Africa. Pleistocene and pre-Pleistocene "species pumps" and temperate refugia explained observed patterns of speciation, intraspecific divergence and, in two cases, mtDNA introgression. The Maloti-Drakensberg is a center of micro-endemism for bats, housing three newly described or undescribed species. Vicariance across biogeographic barriers gave rise to 29 micro-endemic species and intraspecific lineages whose distributions were congruent with those identified in other phytogeographic and zoogeographic studies. Although Köppen-Geiger climate models predict a widespread replacement of current temperate ecosystems in southern Africa by tropical or arid ecosystems by 2070-2100, future climate Maxent models for 13 bat species (all but one of those analyzed above) showed minimal range changes in temperate species from the eastern Escarpment by 2070, possibly due to the buffering effect of mountains to climate change.

A review of arsenic speciation in freshwater fish: Perspectives on monitoring approaches and analytical methods

Arsenic accumulation in fish poses concerns for subsistence and recreational fishers worldwide. However, the toxicity of arsenic to consumers strongly depends on the chemical forms, or species, present. Risk assessments often rely on total arsenic concentrations ([As]), adjusting for assumed small percentages of the most harmful inorganic species. While studies on arsenic speciation in marine fish are widespread, and commonly report less toxic arsenobetaine (AsB) as the dominant form, fewer studies have been conducted on freshwater fish, where arsenic speciation may be more variable. To assess these findings, we conducted a systematic literature review on arsenic speciation in freshwater fish using Covidence© review management software. From over 1100 screened studies, 41 were selected for inclusion based on predefined criteria. These studies reported highly variable arsenic speciation patterns in freshwater fish, calling into question the assumption that AsB is the dominant form present. Sites with suspected or known arsenic contamination issues were prominent, with >50% of data reviewed originating from a contaminated river or lake, but the effect of contamination on arsenic speciation was variable. Although AsB and other organic forms typically dominated, some studies (6/41; 15%) identified fish with elevated concentrations of inorganic arsenic (>1 mg/kg dry wt.), most often corresponding to over 20% of total arsenic. Furthermore, arsenic speciation results accounted for a highly variable proportion of total [As] in fish, often less than 50%. Assuming 20% inorganic arsenic appears to be a poor approximation that cannot be applied to all fish. Based on this considerable variability, we recommend the direct measurement of arsenic species whenever possible, especially when total [As] is elevated above relevant guidelines for the most toxic species (e.g., 0.1-2 mg/kg inorganic arsenic wet wt.). We also recommend future works communicate their results in more detail, including complete description of QAQC protocols, to improve the potential for future meta-analyses. Additional work is needed to characterize arsenic speciation in freshwater fish and assess the toxicity of various arsenic species to accurately evaluate the environmental and human health risks associated with arsenic in fish.

Speciation patterns of Aedes mosquitoes in the Scutellaris Group: a mitochondrial perspective

The Scutellaris Group of Aedes comprises 47 mosquito species, including Aedes albopictus. While Ae. albopictus is widely distributed, the other species are mostly found in the Asia–Pacific region. Evolutionary history researches of Aedes species within the Scutellaris Group have mainly focused on Ae. albopictus, a species that raises significant public health concerns, neglecting the other species. In this study, we aimed to assess genetic diversity and estimate speciation times of several species within the Scutellaris Group. Mosquitoes were therefore collected from various Asia–Pacific countries. Their mitochondrial cytochrome c oxidase subunit 1 (cox1) and subunit 3 (cox3) sequences were analyzed alongside those of other Scutellaris Group species available in the GenBank database. To estimate the divergence time, we analyzed 1849 cox1 gene sequences from 21 species, using three species (Aedes aegypti, Aedes notoscriptus and Aedes vigilax) as outgroups. We found that most of the speciation dates occurred during the Paleogene and the Neogene periods. A separation between the Scutellaris Subgroup and the Albopictus Subgroup occurred approximately 64–61 million years ago (MYA). We also identified a split between species found in Asia/Micronesia and those collected in Melanesia/Polynesia approximately 36–35 MYA. Our findings suggest that the speciation of Aedes species within the Scutellaris Group may be driven by diversity in mammalian hosts, climate and environmental changes, and geological dynamics rather than human migration.

High mountains of central Europe as a refuge of surprising cytotype diversity of Huperzia selago (Lycopodiaceae)

Polyploidization is pivotal in plant speciation, affecting adaptability, ecological tolerance and specific geographical distribution patterns. While cytotype diversity has been extensively studied in angiosperms and ferns, knowledge in homosporous lycophytes remains very limited. Our study addresses this gap, focusing on the homosporous lycophyte Huperzia selago in Central Europe. The genome size of 1330 individuals from 208 populations were assessed via flow cytometry, revealing five distinct cytotypes (2x, 3x, 4x, 5x, 6x). Challenging chromosome counting using gemmae roots yielded average counts of 140 (2x), 204 (3x), and 262 (4x) chromosomes. The hexaploid genome size (29 pg) approached the upper limits reported for lycophytes. Tetraploids were the most abundant (72.7%), while triploids (21.3%) were less common, while the remaining cytotypes comprised less than 5% of the dataset. Geographical separation of cytotypes was not observed. However, uncommon cytotypes were associated with the Alps and triploids also occured in the highest parts of Western Carpathians. Around 27.3% of populations exhibited multiple cytotypes. Except for atypical diploids, spore abortion differed between even (21.8%) and odd ploidies (65.2%). Microcharacter (stoma, spore) proportions did not linearly correspond with increasing ploidy levels. The high ploidy-level diversity and cytotype coexistence in Central European H. selago match the well documented patterns in ferns and angiosperms. These findings provide valuable insights into lycophyte polyploidy, underscoring the necessity for broader geographical sampling and application of molecular studies to elucidate phylogenetic relationships and taxonomic classifications within the genus Huperzia.

Driving factors for distribution and transformation of heavy metals speciation in a zinc smelting site

Heavy metal pollution at an abandoned smelter pose a significant risk to environmental health. However, remediation strategies are constrained by inadequate knowledge of the polymetallic distribution, speciation patterns, and transformation factors at these sites. This study investigates the influence of soil minerals, heavy metal occurrence forms, and environmental factors on heavy metal migration behaviors and speciation transformations. X-ray diffraction analysis revealed that the minerals associated with heavy metals are mainly hematite, franklinite, sphalerite, and galena. Sequential extraction results suggest that lead and zinc are primarily present in the organic-sulfide fractions (F4) and residual form (F5) in the soil, accounting for over 70% of the total heavy metal content. Zinc displayed greater instability in carbonate-bound (16%) and exchangeable (2%) forms. The migration and diffusion patterns of heavy metals in the subsurface environment were visualized through the simulation of labile state heavy metals, demonstrating high congruence with groundwater pollution distribution patterns. The key environmental factors influencing heavy metal stable states (F4 and F5) were assessed by integrating random forest models and redundancy analysis. Primary factors facilitating Pb transformation into stable states were available phosphorus, clay content, depth, and soil organic matter. For Zn, the principal drivers were Mn oxides, soil organic matter, clay content, and inorganic sulfur ions. These findings enhance understanding of the distribution and transformation of heavy metal speciation and can provide valuable insights into controlling heavy metal pollution at non-ferrous smelting sites.

Impacts of Quaternary Climatic Changes on the Diversification of Riverine Cichlids in the Lower Congo River.

Climatic and geomorphological changes during the Quaternary period impacted global patterns of speciation and diversification across a wide range of taxa, but few studies have examined these effects on African riverine fish. The lower Congo River is an excellent natural laboratory for understanding complex speciation and population diversification processes, as it is hydrologically extremely dynamic and recognized as a continental hotspot of diversity harboring many narrowly endemic species. A previous study using genome-wide SNP data highlighted the importance of dynamic hydrological regimes to the diversification and speciation in lower Congo River cichlids. However, historical climate and hydrological changes (e.g., reduced river discharge during extended dry periods) have likely also influenced ichthyofaunal diversification processes in this system. The lower Congo River offers a unique opportunity to study climate-driven changes in river discharge, given the massive volume of water from the entire Congo basin flowing through this short stretch of the river. Here, we, for the first time, investigate the impacts of paleoclimatic factors on ichthyofaunal diversification in this system by inferring divergence times and modeling patterns of gene flow in four endemic lamprologine cichlids, including the blind cichlid, Lamprologus lethops. Our results suggest that Quaternary climate changes associated with river discharge fluctuations may have impacted the diversification of species along the system and the emergence of cryptophthalmic phenotype in some endemic species. Our study, using reduced representation sequencing (2RADseq), indicates that the lower Congo River lamprologines emerged during the Early-Middle Pleistocene transition, characterized as one of the earth's major climatic transformation periods. Modeling results suggest that gene flow across populations and between species was not constant but occurred in temporally constrained pulses. We show that these results correlate with glacial-interglacial fluctuations. The current hyper-diverse fish assemblages of the lower Congo River riverscape likely reflect the synergistic effects of multiple drivers fueling complex evolutionary processes through time.

Pacific marine gregarines (Apicomplexa) shed light on biogeographic speciation patterns and novel diversity among early apicomplexans

Gregarines are the most biodiverse group of apicomplexan parasites. This group specializes on invertebrate hosts (e.g., ascidians, crustaceans, and polychaetes). Marine gregarines are of particular interest because they are considered to be the earliest evolving apicomplexan lineage, having subsequently speciated (and radiated) through virtually all existing animal groups. Still, mechanisms governing the broad (global) distribution and speciation patterns of apicomplexans are not well understood. The present study examines Pacific lecudinids, one of the most species-rich and diverse groups of marine gregarines. Here, marine polychaetes were collected from intertidal zones. Single trophozoite cells were isolated for light and electron microscopy, as well as molecular phylogenetic analyses using the partial 18S rRNA gene. The cytochrome c oxidase subunit 1 gene was used to confirm morphology-based host identification. This study introduces Undularius glycerae n. gen., n. sp. and Lecudina kitase n. sp. (Hokkaido, Japan), as well as Difficilina fasoliformis n. sp. (California, USA). Occurrences of Lecudina cf. longissima and Lecudina cf. tuzetae (California, USA) are also reported. Phylogenetic analysis revealed a close relationship between L. pellucida, L. tuzetae, and L. kitase n. sp. Additionally, clustering among North Atlantic and Pacific L. tuzetae formed a species complex, likely influenced by biogeography.

Implicating the effects of consuming water with a high level of arsenic content: highlighting the cause and consequences of arsenic contamination in drinking water

Abstract Contamination of groundwater due to arsenic (As) and problems faced by drinking the contaminated water have been identified worldwide. The integration of biogeochemical processes has led to the dissolution of naturally occurring As into the groundwater. The goal of this investigation is mainly to determine the presence of As in drinking water and consequences faced by human beings by drinking such contaminated water. Scope of this issue has not yet undergone a full epidemiological examination in any Indian region. However, in India, little is known about the disease caused by arsenicosis. Therefore, the present study discusses various natural and anthropogenic sources of As in groundwater involving its speciation and mobilization pattern in groundwater. Appropriate review on the issues of As contamination in groundwater has been conducted in various regions across the globe followed by the epidemiology and toxicity mechanisms of As in human beings. Various remediation techniques have been adopted for mitigating the major impact of As contamination depending upon the conventional, modern, and hybrid technologies for removing the As from several regions of India.

Hybridization, polyploidization, and morphological convergence make dozens of taxa into one chaotic genetic pool: a phylogenomic case of the Ficus erecta species complex (Moraceae).

The Ficus erecta complex, characterized by its morphological diversity and frequent interspecific overlap, shares pollinating fig wasps among several species. This attribute, coupled with its intricate phylogenetic relationships, establishes it as an exemplary model for studying speciation and evolutionary patterns. Extensive researches involving RADseq (Restriction-site associated DNA sequencing), complete chloroplast genome data, and flow cytometry methods were conducted, focusing on phylogenomic analysis, genetic structure, and ploidy detection within the complex. Significantly, the findings exposed a pronounced nuclear-cytoplasmic conflict. This evidence, together with genetic structure analysis, confirmed that hybridization within the complex is a frequent occurrence. The ploidy detection revealed widespread polyploidy, with certain species exhibiting multiple ploidy levels, including 2×, 3×, and 4×. Of particular note, only five species (F. abelii, F. erecta, F. formosana, F. tannoensis and F. vaccinioides) in the complex were proved to be monophyletic. Species such as F. gasparriniana, F. pandurata, and F. stenophylla were found to encompass multiple phylogenetically distinct lineages. This discovery, along with morphological comparisons, suggests a significant underestimation of species diversity within the complex. This study also identified F. tannoensis as an allopolyploid species originating from F. vaccinioide and F. erecta. Considering the integration of morphological, molecular systematics, and cytological evidences, it is proposed that the scope of the F. erecta complex should be expanded to the entire subsect. Frutescentiae. This would redefine the complex as a continuously evolving group comprising at least 33 taxa, characterized by blurred species boundaries, frequent hybridization and polyploidization, and ambiguous genetic differentiation.