Heterochromatin Pattern Research Articles

Supernumerary B Chromosomes of Tetragonisca fiebrigi Share Repeat Content with Standard Chromosome Set of both T. fiebrigi and Tetragonisca angustula (Apidae: Meliponini)

The stingless bees Tetragonisca angustula and Tetragonisca fiebrigi are widely distributed in Brazil, and both are commonly known as “jataí.” Our goal was to investigate the possible origin of the B chromosomes in T. fiebrigi, a cytotaxonomic trait that differentiates T. fiebrigi from T. angustula. We analyzed diploid chromosome number (2n), B chromosome incidence, patterns of constitutive heterochromatin, and in situ localization of different repetitive DNA probes in T. angustula and T. fiebrigi. Both species displayed 2n = 34, with similar karyotype structures. One to three B chromosomes were observed in T. fiebrigi only. Constitutive heterochromatin was distributed on one arm of all chromosomes in both species, and T. fiebrigi B chromosomes were mainly heterochromatic with one euchromatic extremity. The (GA)₁₅ and (CAA)₁₀ microsatellite probes marked the euchromatic arms of all chromosomes in both species without marking the B chromosomes. The 18S ribosomal DNA (rDNA) probe marked 10 chromosomes in T. angustula and 6 A chromosomes in T. fiebrigi with an additional marking on 1B in individuals with 3B. The Tan-Bsp68I repetitive DNA probe marked the heterochromatic portion of all T. fiebrigi A and B chromosomes. This probe also marked the heterochromatic portion of all T. angustula chromosomes; therefore, both alternative hypotheses to the B chromosome origin are possible: (i) from the A chromosome complement of T. fiebrigi (intraspecific origin); or (ii) a by-product of genome reshuffling following the hybridization between T. fiebrigi and T. angustula (interspecific origin).

Cytogenetic evidence of hybridization in Prosopis alba, P. hassleri, and P. fiebrigii in the semiarid-humid Chaco transition

Hybridization is a common and widespread phenomenon in vascular plants, leading to genetic exchange between related species. Interspecific hybridization has been extensively reported in Prosopis, a key genus of the Gran Chaco Americano, when species grow in sympatry or have adjacent distributions. Here, we performed a cytogenetic study in a hybrid zone of Prosopis alba, P. hassleri, and P. fiebrigii in southern South America. We characterized the karyotypes of pure species and the putative interspecific hybrids using chromosome fluorescent banding. Two karyotypes according to the heterochromatin pattern were identified, one corresponding to P. alba and the other to P. hassleri and P. fiebrigii; hybrid individuals presented P. alba or P. hassleri/P. fiebrigii karyotypes. The karyotypic formula and the number of nucleolar organizer regions were the same for all the studied morphotypes. Chromosome similarity among different species of the genus allows a continued hybridization and introgression between species and lends support to the hypothesis of a relatively recent diversification of Prosopis. Studying karyotype variation within a population could be a novel approach to the cytogenetic study of hybrids in the future.

Comparative cytogenetics of Hemorrhois hippocrepis and Malpolon monspessulanus highlights divergent karyotypes in Colubridae and Psammophiidae (Squamata: Serpentes)

Despite the growing interest in the evolutionary cytogenetics of squamates, chromosomal data are lacking for most taxa. We performed a preliminary molecular taxonomic analysis and a comparative cytogenetic study on Hemorrhois hippocrepis and Malpolon monspessulanus. We used a combination of standard karyotyping, Chromomycin A3/Methyl green staining, C-banding, Ag-NOR staining and NOR-FISH to provide the first karyotype description of H. hippocrepis and a re-description of the karyotype of M. monspessulanus, including chromosome markers, heterochromatin patterns and sex chromosome systems. Our results show that H. hippocrepis has 2 n = 36 chromosomes, with 16 macro- and 20 microchromosomes and NORs on the 6th pair. The 4th pair represents homomorphic (metacentric) ZW sex chromosomes, but the W chromosome is completely heterochromatic. Malpolon monspessulanus has 2 n = 44 chromosomes, with 20 macro- and 24 microchromosomes, NORs on the 6th telocentric pair. The 4th pair represents the sex chromosomes (ZZ/ZW), with a W chromosome smaller than the Z and completely heterochromatic. Comparing our cytogenetic data to those available from the literature, we note the occurrence and distribution of primitive and derived chromosomal characteristics and discuss the chromosome diversification in two snake clades belonging to Colubridae and Psammophiidae, respectively. We highlight that these two families followed different chromosome diversification pathways, characterised by a highly conserved karyotype structure in Colubridae and a higher chromosome variability in Psammophiidae, mostly driven by a progressive reduction of the chromosome number by means of chromosome fusions. We also provide cytotaxonomic insights supporting the distinction between M. monspessulanus and M. insignitus.

Heterochromatin patterns in four diploid Zephyranthes species with different basic chromosome number (Amaryllidaceae)

Diverse species-specific karyotypes have been reported within Zephyranthes Herb., as well as different basic chromosome numbers (x = 5, 6, 7, and 9), with x = 6 being the most common. The aim of this work was to analyze the constitutive heterochromatin (C-Het) pattern of karyotypes in four diploid Zephyranthes species. For this purpose, a cytomolecular analysis of the karyotypes of Z. andalgalensis (2n = 2x = 12 = 4 m + 2 sm), Z. chacoensis (2n = 2x = 12 = 3 m + 2 sm + 1 st), Z. robusta (2n = 2x = 12 = 3 m + 2 sm + 1 st), and Z. pedunculosa (2n = 2x = 14 = 1 m + 3 sm + 3 st) was performed for the first time. All the species analyzed showed CMA+ terminal bands that could be distinguished by their heterochromatin pattern. Interestingly, DAPI+ interstitial bands were also found in the karyotype of Z. robusta. The four Zephyranthes C-Het patterns analyzed show that diploid species have little GC-rich heterochromatin, which is generally associated with terminal satellites, and that AT-rich heterochromatin is rare. The dysploidy evolutionary change between two basic chromosome numbers (x = 6 and 7) is discussed in the present study.

First constitutive heterochromatin characterization and Karyotype of white stork Ciconia ciconia (Aves: Ciconiidae).

The karyotype and constitutive heterochromatin pattern of the white stork Ciconia ciconia samples obtained from Manzala lake, Dimiaat, Egypt was described. Somatic cells of Ciconia ciconia samples have diploid number 2n= 68 chromosomes. Out of 68 chromosomes, 11 pairs including sex chromosomes were macrochromosomes and the remaining pairs were microchromosomes. Of the 11 macrochromosome pairs, no.1, 2, 4 and 5 were submetacentric and pairs no. 6, 7 and 8 were described as metacentric. In addition, the autosome pair no.3 was subtelocentric, while autosome pair no.9 was acrocentric. Also, the sex chromosome Z represents the fourth one in size and it was classified as submetacentric while, W chromosome appeared as medium size and was acrocentric. Furthermore, C-banding pattern (constitutive heterochromatin) revealed variation in their sizes and occurrence between macrochromosomes. Pairs no. 7 and 8 of autosomes exhibited unusual distribution of heterochromatin, where they appeared as entirely heterochromatic. This may be related to the origin of sex chromosomes Z and W. However, there is no sufficient evidence illustrate the appearance of entirely heterochromatic autosomes. Therefore, there is no available cytogenetic literature that describes the C-banding and karyotype of Ciconia Ciconia, so the results herein are important and may assist in cytogenetic study and evolutionary pattern of Ciconiiformes.

Multiple heterochromatin diversification events in the genome of fungus-farming ants: insights from repetitive sequences.

A substantial portion of the eukaryotic genome includes repetitive DNA, which is important for its stability, regulation, and architecture. Fungus-farming ant genomes show remarkable structural rearrangement rates that were necessary for the establishment of their agriculture-based lifestyle, highlighting the relevance of this peculiar group in understanding the repetitive portion of ant genome. Chromosomal banding studies are in accordance with genomic data because they show that repetitive heterochromatic sequences of basal and derivative Attina species are GC-rich, an uncommon trait in Formicidae. To understand the evolutionary dynamics of heterochromatin in Attina, we compared GC-rich heterochromatin patterns between the Paleoattina and Neoattina clades of this subtribe. To this end, we hybridized the Mrel-C0t probe (highly and moderately repetitive DNA) obtained from Mycetomoellerius relictus, Neoattina with GC-rich heterochromatin, in karyotypes of Paleoattina and Neoattina species. Additionally, we mapped the repetitive sequences (GA)15 and (TTAGG)6 in species of the two clades to investigate their organization and evolutionary patterns in the genome of Attina. The Mrel-C0t probe marked the heterochromatin in M. relictus, in other Mycetomoellerius spp., and in species of Mycetarotes, Cyphomyrmex, and Sericomyrmex (Neoattina). In Mycetomoellerius urichii, only pericentromeric heterochromatin was marked with Mrel-C0t. No marking was observed in Paleoattina species or in Atta and Acromyrmex (Neoattina). These results indicated that different evolutionary events led to heterochromatin differentiation in Attina. The most likely hypothesis is that GC-rich heterochromatin arose in the common ancestor of the two clades and accumulated various changes throughout evolution. The sequences (GA)15 and (TTAGG)6 located in euchromatin and telomeres, respectively, showed more homogeneous results among the species.

Cytogenetics of four foam-nesting frog species of the Physalaemus gracilis group (Anura, Leptodactylidae)

Intending to increase the knowledge about cytogenetics of Physalaemus and the sparsely studied P. gracilis group, we analyzed the karyotypes of P. carrizorum, P. gracilis, P. lisei, and P. sp. aff. gracilis. We studied chromosome morphology, heterochromatin patterns, Ag-NORs location and mapped the repetitive DNA sequence PcP190. All species showed diploid karyotypes composed of 22 bi-armed chromosomes and similar C- bands and Ag-NOR patterns. C-bands were mainly centromeric and pericentromeric; non-centromeric C-bands were detected on the telomeres of pair 1 in P. lisei, although polymorphic, and interstitially on pair 10 of P. gracilis. This last character is useful to distinguish P. gracilis from its sibling species P. sp. aff. gracilis. The Ag-NOR sites were detected on the long arms of chromosome pair 8 but with a variable position among species. Clusters of PcP190 showed centromeric and pericentromeric positions coincident with conspicuous C-bands, on pairs 2 and 9 in P. gracilis and P. sp. aff. gracilis, pair 3 in P. carrizorum, and pair 7 in P. lisei. These results significantly increase the knowledge about Physalaemus cytogenetics and encourage further studies on the satellite PcP190 in other genera of Leiuperinae to better understand its taxonomic distribution and the evolutionary dynamics.

Mechanisms and Regulation of Cellular Senescence.

Cellular senescence entails a state of an essentially irreversible proliferative arrest in which cells remain metabolically active and secrete a range of pro-inflammatory and proteolytic factors as part of the senescence-associated secretory phenotype. There are different types of senescent cells, and senescence can be induced in response to many DNA damage signals. Senescent cells accumulate in different tissues and organs where they have distinct physiological and pathological functions. Despite this diversity, all senescent cells must be able to survive in a nondividing state while protecting themselves from positive feedback loops linked to the constant activation of the DNA damage response. This capacity requires changes in core cellular programs. Understanding how different cell types can undergo extensive changes in their transcriptional programs, metabolism, heterochromatin patterns, and cellular structures to induce a common cellular state is crucial to preventing cancer development/progression and to improving health during aging. In this review, we discuss how senescent cells continuously evolve after their initial proliferative arrest and highlight the unifying features that define the senescent state.

Distinct pattern of restriction endonuclease digestion on the heterochromatic components of Sarcophagid flies: An evidence of species-specific divergence of heterochromatin

Heterochromatin in the genome plays a vital role in species differentiation and evolution. To characterize and unravel molecular composition of the heterochromatic regions of the genome in dipteran flies, especially in Sarcophagids, different banding techniques have been used previously which established the banding pattern of constitutive heterochromatin. The present study is an attempt to further explore the base specificity of rather highly condensed C-banded regions of chromosomes using restriction enzyme (RE) digestion along with Giemsa staining, in search of species-specific targets of RE digestion. Different REs such as Apa I, Cla I, Eco RI, Hind III, Hae III and Pvu II have been used to characterize the heterochromatic regions of two Sarcophaga species, i.e., Sarcophaga ruficornis and Sarcophaga argyrostoma. Some of the constitutively heterochromatic regions remain intensely stained indicating no targets for the enzyme cleavage, while some of the heterochromatic areas in both the species show remarkable and distinct digestion sites after the treatment of REs. In S. ruficornis, Hind III digests the entire autosomes including the pericentromeric regions and the sex chromosome; while Hae III and Pvu II selectively digest autosomes and sex chromosome. While in S. argyrostoma, Cla I digests the entire autosomes including the pericentromeric regions; Hind III and Hae III selectively digests autosomes and sex chromosomes. These findings suggest the presence of distinctive enzyme digestion targets on the heterochromatin, which may provide important evidence for the differential base specificity that were previously found to be constitutive in nature.

Brain Ultrastructure: Putting the Pieces Together.

Unraveling the fine structure of the brain is important to provide a better understanding of its normal and abnormal functioning. Application of high-resolution electron microscopic techniques gives us an unprecedented opportunity to discern details of the brain parenchyma at nanoscale resolution, although identifying different cell types and their unique features in two-dimensional, or three-dimensional images, remains a challenge even to experts in the field. This article provides insights into how to identify the different cell types in the central nervous system, based on nuclear and cytoplasmic features, amongst other unique characteristics. From the basic distinction between neurons and their supporting cells, the glia, to differences in their subcellular compartments, organelles and their interactions, ultrastructural analyses can provide unique insights into the changes in brain function during aging and disease conditions, such as stroke, neurodegeneration, infection and trauma. Brain parenchyma is composed of a dense mixture of neuronal and glial cell bodies, together with their intertwined processes. Intracellular components that vary between cells, and can become altered with aging or disease, relate to the cytoplasmic and nucleoplasmic density, nuclear heterochromatin pattern, mitochondria, endoplasmic reticulum and Golgi complex, lysosomes, neurosecretory vesicles, and cytoskeletal elements (actin, intermediate filaments, and microtubules). Applying immunolabeling techniques to visualize membrane-bound or intracellular proteins in neurons and glial cells gives an even better appreciation of the subtle differences unique to these cells across contexts of health and disease. Together, our observations reveal how simple ultrastructural features can be used to identify specific changes in cell types, their health status, and functional relationships in the brain.

Genetic analysis of an insular population of Sapajus nigritus (Primates: Cebidae) in Rio de Janeiro state, Brazil.

The black-horned capuchin (Sapajus nigritus) is a neotropical primate with wide distribution from southeastern Brazil to northeastern Argentina. Although this species has been described with coat pattern variation, even with intrapopulational differences, and characterized as having the greatest genetic diversity among Sapajus species, there are still few studies on natural populations that contribute to the knowledge of this intraspecific variability. We examined individuals from an as yet unstudied population of Ilha da Marambaia, Rio de Janeiro (RJ) state, Brazil, compared with published data for S. nigritus. We sought to confirm the species through phenotypic and genetic characterization using C-banding and fluorescence in situ hybridization with #11qHe+/21WCP probes for chromosomal constitutive heterochromatin (He+) patterns, and cytochrome c oxidase I and II gene sequences for phylogenetic analysis. The coat presented two color patterns, varying from brown to blackish on the body, yellow to brown on the chest, and white to yellow on the face, besides the presence and shape of the tufts on the head, corresponding to S. nigritus. He+ was identified in pairs 4, 12, 13 and 17, and less consistently in pairs 6, 19 and 21, already described for this species. While most Sapajus species have a large He+ block, here pair 11 was identified without extracentromeric He+, the same as reported for S. nigritus from Argentina. Molecular analysis showed divergence of this population from other S. nigritus sequences, reinforcing a trend already demonstrated when samples from RJ are compared with the rest of the distribution, which may represent an evolutionary deviation.

Revisiting the Chromosomal Diversification of the Genus Rhodnius (Stål, 1859) (Hemiptera, Triatominae).

Although all triatomines are considered as potential vectors of the Chagas disease, the Triatoma, Panstrongylus, and Rhodnius genera are the most important from the epidemiological point of view. Based on cytogenetic analyzes carried out so far (C banding and FISH), the species of the genus Rhodnius show little interspecific chromosomal variation. Thus, we analyzed the distribution of AT- and CG-rich DNA in the chromatin and chromosomes of the genus Rhodnius and discuss the chromosome evolution of these vectors. Except for Rhodnius domesticus, Rhodnius nasutus, Rhodnius pictipes, Rhodnius colombiensis, and Rhodnius pallescens, all Rhodnius species have euchromatic autosomes with the absence of AT- and CG-rich blocks. Curiously, the same species that have heterochromatin blocks in the autosomes also have chromomycin A3 (CMA3 +) blocks dispersed in the prophasic nucleus (demonstrating that the heterochromatin of these species is rich in CG). Thus, we characterize the AT- and CG-rich DNA pattern for the genus Rhodnius, and we suggest that the pattern of CG-rich heterochromatin in the autosomes of these vectors evolved independently in pallescens, pictipes, and prolixus groups.

Too many species: morphometrics, molecular phylogenetics and genome structure of a Brazilian species complex inEpidendrum(Laeliinae; Orchidaceae) reveal fewer species than previously thought

AbstractIn this study, we analyse a species complex in Epidendrum, a mega-diverse Neotropical orchid genus, that is formed by the 11 Brazilian species of the E. difforme group. Although this group (c. 100 taxa) exhibits relatively high levels of floral variation, the Brazilian species are similar, making delimitation problematic. Here we combine molecular (phylogenetics), morphological (geometric morphometrics), genome size and cytogenetic (chromosome counts and CMA/DAPI staining) data to investigate circumscription of these species. Our results were interpreted by looking for congruence of the results as a means to delimit species. The studied taxa appear to be monophyletic, and karyotypically all analysed accessions were 2n = 40. Their 1C values vary from 1.99 ± 07 pg to 2.84 ± 0.12 pg. We did not find evidence for recent polyploidy or dysploidy and, apparently, these phenomena have not been important in the evolution of this species complex. On the other hand, we found high levels of polymorphism for CMA/DAPI banding, and variation in genome size appears to be positively correlated with latitude. Geometric morphometrics indicate that E. sanchezii and E. anatipedium/E. amarajiense are distinct from the remaining species, and three groups of other species can be separated using canonical variables analysis (CVA). Variation in lip shape, genome size and heterochromatin patterns of the taxa are not fully congruent with the phylogenetic analysis, but our results allowed us to delimit with full confidence four species: E. amapense, E. anatipedium (including E. amarajiense), E. pseudodifforme (including E. campaccii and E. thiagoi) and E. sanchezii. Four others will be tentatively maintained but need further study. Our results indicate that it will be necessary to reassess many of the species complexes in the genus using a similar multidisciplinary perspective to evaluate the number of taxa that should be recognized.

Cytogenetic analysis of three Ctenidae species (Araneae) from the Amazon.

Cytogenetic characterization was performed on three wandering spiders: Ctenus amphora Mello-Leitão, 1930, C. crulsi Mello-Leitão, 1930 and C. villasboasi Mello-Leitão, 1949. The three species had similar karyotypes, with 2n = 28 (26 + X1X20) in males, with sex chromosomes exhibiting positive heteropicnosis in meiotic cells. 18S rDNA mapping revealed gene sites at the terminal region of one chromosomal pair for all species, with one C. crulsi individual, showing markings in two pairs. C. villasboasi showed markers only in the pachytene phase. The distribution pattern of constitutive heterochromatin was found to be characteristic for the genus, with markings in the centromeric region of all chromosomes, suggesting an acrocentric morphology for all chromosomes of the three analysed species. The results support the fusion of sex chromosomes as an evolutionary tendency for this spider group.

Structural variations of subterminal satellite blocks and their source mechanisms as inferred from the meiotic configurations of chimpanzee chromosome termini

African great apes have large constitutive heterochromatin (C-band) blocks in subtelomeric regions of the majority of their chromosomes, but humans lack these. Additionally, the chimpanzee meiotic cell division process demonstrates unique partial terminal associations in the first meiotic prophase (pachytene). These are likely formed as a result of interaction among subtelomeric C-band blocks. We thus conducted an extensive study to define the features in the subtelomeric heterochromatic regions of chimpanzee chromosomes undergoing mitotic metaphase and meiotic cell division. Molecular cytogenetic analyses with probes of both subterminal satellite DNA (a main component of C-band) and rDNA demonstrated principles of interaction among DNA arrays. The results suggest that homologous and ectopic recombination through persistent subtelomeric associations (post-bouquet association observed in 32% of spermatocytes in the pachytene stage) appears to create variability in heterochromatin patterns and simultaneously restrain subtelomeric genome polymorphisms. That is, the meeting of non-homologous chromosome termini sets the stage for ectopic pairing which, in turn, is the mechanism for generating variability and genomic dispersion of subtelomeric C-band blocks through a system of concerted evolution. Comparison between the present study and previous reports indicated that the chromosomal distribution rate of sutelomeric regions seems to have antagonistic correlation with arm numbers holding subterminal satellite blocks in humans, chimpanzees, and gorillas. That is, the increase of subterminal satellite blocks probably reduces genomic diversity in the subtelomeric regions. The acquisition vs. loss of the subtelomeric C-band blocks is postulated as the underlying engine of this chromosomal differentiation yielded by meiotic chromosomal interaction.

Cytogenetic Analysis and Chromosomal Mapping of Repetitive DNA in Melipona Species (Hymenoptera, Meliponini)

Stingless bees of the genus Melipona are subdivided into 4 subgenera called Eomelipona, Melikerria, Melipona sensu stricto, and Michmelia according to species morphology. Cytogenetically, the species of the genus Melipona show variation in the amount and distribution of heterochromatin along their chromosomes and can be separated into 2 groups: the first with low content of heterochromatin and the second with high content of heterochromatin. These heterochromatin patterns and the number of chromosomes are characteristics exclusive to Melipona karyotypes that distinguish them from the other genera of the Meliponini. To better understand the karyotype organization in Melipona and the relationship among the subgenera, we mapped repetitive sequences and analyzed previously reported cytogenetic data with the aim to identify cytogenetic markers to be used for investigating the phylogenetic relationships and chromosome evolution in the genus. In general, Melipona species have 2n = 18 chromosomes, and the species of each subgenus share the same characteristics in relation to heterochromatin regions, DAPI/CMA₃ fluorophores, and the number and distribution of 18S rDNA sites. Microsatellites were observed only in euchromatin regions, whereas the (TTAGG)₆ repeats were found at telomeric sites in both groups. Our data indicate that in addition to the chromosome number, the karyotypes in Melipona could be separated into 2 groups that are characterized by conserved cytogenetic features and patterns that generally are shared by species within each subgenus, which may reflect evolutionary constraints. Our results agree with the morphological separation of the Melipona into 4 subgenera, suggesting that they must be independent evolutionary lineages.

Three-dimensional reconstruction of corpora allata nucleus reveals insights into epigenetic mechanisms of caste differentiation in Melipona scutellaris stingless bees

In most Hymenoptera, the caste differentiation is influenced by differential environmental cues (e.g., food), which affect larvae development. However, Melipona stingless bees represent an exception to this rule. Workers and queens can emerge from brood cells of the same size, with the same quantity and quality of food. The different phenotypes of female bees depend on the interaction of genetic and environmental components. This mechanism is driven by the juvenile hormone, a key physiological factor synthetized by the corpora allata glands. In addition to that, epigenetic mechanisms were recently associated with caste development in Melipona scutellaris. In this study, using images captured by confocal microscopy and analyzed by 3D computational reconstruction, we show the similarities and differences in the pattern and volume of heterochromatin in the cell nuclei of corpora allata glands of M. scutellaris. Our results imply that heterochromatin territorial dispersion may act as a major player on the female phenotypic plasticity of M. scutellaris stingless bees.

Karyo-morphological consistency and heterochromatin distribution pattern in diploid and colchitetraploids of Vigna radiata and V. mungo

A systematic genetic analysis of colchitetraploids of Vigna radiata and V. mungo in three different generations (C1, C2 and C3) was made using karyomorphology of chromosomes and heterochromatin distribution pattern among them. Autotetraploid of both species were produced using aqueous colchicine (0.15 and 0.20%) and maintained through three successive generations (C1, C2 and C3). The karyomorphological studies showed that the chromosome karyotype remain constant with a consistent asymmetry index among the 3 generations of colchitetraploids and putative diploids in both species. The differential staining technique using fluorophore chromomycin A3 (CMA) showed that CMA+ heterochromatin increase significantly ranging between 1.2 and 2 folds in the colchitetraploids with the CMA+ blocks located mainly on the proximal and terminal regions in the both diploids and autotetraploids. Our study reveal that the karyo-morphology of chromosome tend to maintain a consistency between diploid and colchitetraploids, however, the heterochromatin pattern showed a significant heterogeneity as revealed by the CMA+.

Constitutive Heterochromatin Pattern of Five Domestic Duck Breeds, (Aves: Anatidae) in Egypt

Constitutive heterochromatin patterns of five domestic duck breeds three of Anas platyrhynchos (Dumyati, Khample and Pekin) and two of Cairina moschata (Muscovy and Sudani) occurring in Egypt have been described. Results indicated that although the constitutive heterochromatin (C-banding) pattern of three Anas platyrhynchos breeds shared the same distribution of heterochromatin there was an obvious variation in heterochromatin size. In addition, the C-banding patterns of the two Cairina moschata breeds (Muscovy and Sudani) were approximately similar. There wasvariation in size, number and occurrence of C-band blocks on micro-chromosomes between the examined five duck breeds. This may be attributed to the variation of euchromatin content and its correlation with chromosome size and arrangement of constitutive heterochromatin. Furthermore, it may be due to genome mixing through hybridization between related species and/or genera. The present results have shown that discrimination between Anas platyrhynchos (Dumyati, Khample and Pekin) and Cairina moschata (Muscovy and Sudani) duck breeds could be realized via cytogenetical markers such as presence of entirely heterochromatic chromosome pair no.8 in breeds belong Anas platyrhynchos whereas it was euchromatic in breeds of Cairina moschata. In addition to chromosome pair no.8, C-banding pattern of autosome pair no.3 and sex chromosome Z Could discriminate between the duck breeds of Anas platyrhynchos and Cairina moschata. Moreover, the constitutive heterochromatin amounts have significantly varied between the ducks belonging to the two genera. Thus, about only one-third of the micro-chromosomes in the three Anas breeds, exhibited large and visible C-banding blocks in both males and females while up to half of them in the two Cairina breeds. Hence, the duck breeds common in Egypt could be distinguished from others occurring elsewhere by C-banding pattern but this will be confirmed in further biochemical and molecular studies (under publication).

Heterochromatin evolution in Arachis investigated through genome-wide analysis of repetitive DNA.

The most conspicuous difference among chromosomes and genomes in Arachis species, the patterns of heterochromatin, was mainly modeled by differential amplification of different members of one superfamily of satellite DNAs. Divergence in repetitive DNA is a primary driving force for genome and chromosome evolution. Section Arachis is karyotypically diverse and has six different genomes. Arachis glandulifera (D genome) has the most asymmetric karyotype and the highest reproductive isolation compared to the well-known A and B genome species. These features make A. glandulifera an interesting model species for studying the main repetitive components that accompanied the genome and chromosome diversification in the section. Here, we performed a genome-wide analysis of repetitive sequences in A. glandulifera and investigated the chromosome distribution of the identified satellite DNA sequences (satDNAs). LTR retroelements, mainly the Ty3-gypsy families "Fidel/Feral" and "Pipoka/Pipa", were the most represented. Comparative analyses with the A and B genomes showed that many of the previously described transposable elements (TEs) were differently represented in the D genome, and that this variation accompanied changes in DNA content. In addition, four major satDNAs were characterized. Agla_CL8sat was the major component of pericentromeric heterochromatin, while Agla_CL39sat, Agla_CL69sat, and Agla_CL122sat were found in heterochromatic and/or euchromatic regions. Even though Agla_CL8sat belong to a different family than that of the major satDNA (ATR-2) found in the heterochromatin of the A, K, and F genomes, both satDNAs are members of the same superfamily. This finding suggests that closely related satDNAs of an ancestral library were differentially amplified leading to the major changes in the heterochromatin patterns that accompanied the karyotype and genome differentiation in Arachis.