Transport Of Passive Particles Research Articles

Indicators to assess temporal variability in marine connectivity processes: A semi-theoretical approach.

Oceanographic connectivity in an effective network of protected areas is crucial for restoring and stabilising marine populations. However, temporal variability in connectivity is rarely considered as a criterion in designing and evaluating marine conservation planning. In this study, indicators were defined to characterise the temporal variability in occurrence, flux, and frequency of connectivity in a northwestern Mediterranean Sea area. Indicators were tested on semi-theoretically-estimated connections provided by the runs of a passive particle transport model in a climatological year and in three years between 2006-2020, showing large deviation from the climatological year. The indicators allowed comparing the temporal variability in connectivity of four zones, highlighted differences in connectivity due to their locations and the mesoscale hydrodynamics, and identified areas that require further investigation. The three indicators also showed that the temporal variability in connectivity was influenced by the duration and depth of particle transport, although no consistent pattern was observed in the indicator variations of the compared zones. Provided that specific objectives will be given when parameterising transport models (i.e., selection of focus species and time period), indicators of temporal variability in connectivity have potential to support spatial conservation planning, prioritise the protection of marine resources, and measure the effectiveness of Marine Protected Areas, in line with a long-term vision of ocean management.

River-floodplain connectivity and residence times controlled by topographic bluffs along a backwater transition

The morphology of river levees and floodplains is an important control on river-floodplain connectivity within a river system under sub-bankfull conditions, and this morphology changes as a river approaches the coast due to backwater influence. Floodplain width can also vary along a river, and floodplain constrictions in the form of bluffs adjacent to the river can influence inundation extent. However, the relative controls of backwater-influenced floodplain topography and bluff topography on river-floodplain connectivity have not been studied. We measure discharge along the lower Trinity River (Texas, USA) during high flow to determine which floodplain features are associated with major river-floodplain flow exchanges. We develop a numerical model representing the transition to backwater-dominated river hydraulics, and quantify downstream changes in levee channelization, inundation, and fluxes along the river-floodplain boundary. We model passive particle transport through the floodplain, and compute residence times as a function of location where particles enter the floodplain. We find that bluff topography controls flow from the floodplain back to the river, whereas levee topography facilitates flow to the floodplain through floodplain channels. Return flow to the river is limited to locations just upstream of bluffs, even under receding flood conditions, whereas outflow locations are numerous and occur all along the river. Residence times for particles entering the floodplain far upstream of bluffs are as much as two orders of magnitude longer than those for particles entering short distances upstream of bluffs. This study can benefit floodplain ecosystem management and restoration plans by informing on the key locations of lateral exchange and variable residence time distributions in river-floodplain systems.

Optimizing Injection Locations Relaxes Altitude‐Lifetime Trade‐Off for Stratospheric Aerosol Injection

AbstractStratospheric Aerosol Injection (SAI) aims to offset some climate hazards by injecting aerosols into the stratosphere to reflect solar radiation. The lifetime of injected particles influences SAI's radiative efficacy—the ratio of radiative forcing to particle mass flux. We employ a Lagrangian trajectory model with particle sedimentation to simulate how background circulations influence the transport of passive particles (without microphysical growth) in the stratosphere and quantify sensitivities of particle lifetime to injection locations. At 20 km, optimizing injection locations can increase particle lifetime by >40%. Injection strategies can be constrained to maintain an interhemispheric balance of particle lifetime without significantly decreasing total lifetime. Generally, increasing injection altitude increases particle lifetime while also increasing costs and environmental impacts of deployment aircraft. Optimizing injection latitude and longitude can relax this altitude‐lifetime trade‐off by increasing lifetime without needing to increase altitude, which warrants further testing in global climate models with aerosol microphysics.

How fine is fine enough? Effect of mesh resolution on hydrodynamic simulations in coral reef environments

Coral reef environments are biodiversity hotspots that provide many services to coastal communities. They are currently facing an increasing anthropogenic pressure that jeopardises their survival. Numerical ocean models are an important tool to understand the functioning of coral ecosystems and the mechanisms ensuring their resilience. However, simulating the water circulation through reef systems is challenging because of their naturally complex topography and bathymetry. Many ocean models used for such applications have a spatial resolution coarser than the scale of individual reefs, which puts into question their suitability for the task. Here, we assess the sensitivity of a coastal ocean model’s outputs to its spatial resolution when simulating the water circulation in the entire Great Barrier Reef (Australia), the largest coral reef system in the world. We consider the same model with five different resolutions near reefs, ranging from 250 m to 4 km, and compare the model outputs at different locations around reefs and in the open ocean. We also simulate the transport of passive particles released from those different locations. Our results show that the simulated tidal signal is similar for all five resolutions. However, strong discrepancies (> 10 cm/s) in the current velocity are observed near the reefs and along the rugged coastline. When using a coarse-resolution model, the amplitude of the currents is overestimated over reefs, and underestimated between them. We find that validating the model at deep water mooring sites is not sufficient to ensure it performs well close to reefs. Discrepancies in currents lead to more directional and uniform tracer dispersal patterns on coarse-resolution meshes that contrast with the more dispersive patterns observed on fine-resolution meshes. Those differences at the reef level have a large cumulative effect when simulating transport processes over several weeks. Our results suggest that ocean circulation and transport simulations in coral reef environments should be based on model resolutions finer than the reef scale, which generally means a maximum resolution of about 250–500 m.

Numerical investigation of the three-dimensional paths of plastic polymers in the Gulf of Naples

The high-resolution Campania Regional Ocean Model (CROM), coupled with an online Lagrangian particle tracking algorithm, is used to investigate the horizontal and vertical behavior of different (in terms of size and density) plastic polymer types during February and August 2016 in the Gulf of Naples. The transport of passive particles is evaluated based on the three-dimensional Eulerian velocity fields provided by the ocean model. The virtual particles are released in several hot spot areas in the Gulf of Naples where most of the marine debris is supposed to come from. A sensitivity analysis on the vertical sinking for negatively buoyant particles is carried out. The sinking behavior is determined by the settling velocity, which depends on the physical properties of the individual litter item as well as on the hydrodynamical features of the marine environment. Different numerical experiments are carried out to evaluate the effect of marine dynamics on three-dimensional transport.

Accumulation of Particles Towards the Envelope of a Fluid-Infused Patch Under Evaporation

We study the dynamics of unsaturated flows within a fluid-infused wet patch in a thin porous layer, coupled with the transport of passive particles, partly inspired by some art practice and environmental and industrial activities. The role of wetting and capillary forces and the influence of evaporation are both emphasized. Two coupled partial differential equations (PDEs) are first derived to describe the time evolution of the fluid saturation and concentration of passive particles. Three dimensionless parameters are identified after appropriate nondimensionalization of the coupled PDEs, the influence of which is demonstrated through asymptotic and numerical solutions at both the early and late times. With evaporation, in particular, the fluid front first arrives at a maximum location after an initial period of spreading. Thereafter, the front starts to recede until the fluid drains out at a finite time. Correspondingly, the concentration of particles blows up at a finite time, when the size of the wet region shrinks to zero. Meanwhile, the spatial distribution of particles evolves towards a universal curve near the front at late times, as the particles gradually accumulate at the front of the wet patch. It is recognized that, while the spreading of fluid within a porous layer behaves similar to that of a viscous gravity current subject to volume loss, the frontal structure for the concentration of particles, to some extent, is similar to that of an intruding inviscid gravity current.

Impacts of human modifications on material transport in deltas

Abstract. As humans continue to inhabit and modify river deltas, the natural processes governing material transport through these landscapes are altered. Two common engineering projects undertaken on deltas are the dredging of channels to enable shipping and the construction of embankments to reduce flooding. While the impact of these topographic modifications has been studied at a local level for specific sites, there is a gap in our generalized understanding of how these landscape modifications impact material transport. To narrow this gap, we conduct exploratory numerical modeling to develop deltaic landscapes with different input sediment compositions, modify their topography to mimic dredging and embankments, simulate different flow conditions, and then model the transport of passive particles. We find that human modification of topography lowers hydrological connectivity by reducing the area visited by fluvial inputs. The amount of time particles spend within the delta is reduced by the construction of polders and is lengthened by dredging. Material buoyancy has a greater impact on nourishment areas and exposure times than flow regime or topographic modification, with positively buoyant particles spending longer and visiting a greater area of the delta than neutral and negatively buoyant material. The results of this study can help guide the design of future engineering projects by providing estimates of their likely impact on transport processes.

Transfer of passive particles in the velocity field of vortex tripole moving on a plane

Purpose of this article is to study the transport of passive particles in the velocity field of a vortex tripole with a change in the parameter that determines the speed of the configuration movement. A structure consisting of a central vortex and satellite vortices rotating around it with the opposite vorticity is understood as a tripole. We employ a system of three point vortices, the most simple mathematical representation of a vortex tripole, which may be expressed as a system of nonlinear ordinary differential equations with a parameter. Consideration is limited to a particular case of a tripole with zero total vorticity. The influence of the speed values of vortex configuration movement on the processes of passive particle transport has been studied. Methods. The study was carried out numerically using algorithms based on the dynamical systems approaches including the construction of the Poincare map and the analysis of the dynamics of marker particles. Were carried out long ´ times calculations, corresponding to hundreds and thousands of turns around the tripole center. Integrators of high orders of accuracy were used to solve the Cauchy problems, which made it possible to adequacy of the calculation result control. Results. We found that transferring passive particles is fundamentally different depending on the speed of the tripole. A vast zone of chaotic dynamics forms in the neighborhood of the vortices when the velocity is low. This zone slowly shifts along with the tripole. There are subregions of active and slow mixing inside the chaos region. The possible stages of particle dynamics are: transfer from the region to the right of the tripole to the area to the left, vigorous mixing near the vortices, and slowly drifting to the region to the left of the tripole. At a high speed of vortex configuration in the entire chaotic region, the particles are strongly mixed. The vortex tripole removes particles from the vicinity of its initial position over long distances and practically does not capture new particles along its path. In intermediate situations, both processes can be realized at varying degrees. Conclusion. Non-trivial scenarios for the transport of passive particles by a vortex tripole, which can also occur in real vortex configurations of fluids, have been discovered and described.

Passive particle transport using a transversely propelling polymer "sweeper".

Using Langevin dynamics simulations, we study a system of a transversely propelling polymer and passive Brownian particles. We consider a polymer whose monomers experience a constant propulsion force perpendicular to the local tangents, surrounded by passive particles undergoing thermal fluctuations in two dimensions. We demonstrate that the sideways propelling polymer can act as a sweeper to collect the passive Brownian particles, mimicking a shuttle-cargo system. The number of particles the polymer collects during its motion increases with time and finally saturates to a maximum number. Moreover, the velocity of the polymer decreases as the particles get trapped due to the extra drag they generate. Rather than going to zero, the polymer velocity eventually reaches a terminal value close to the contribution from the thermal velocity when it collects the maximum load. We show that, apart from the length of the polymer, the propulsion strength and the number of passive particles are the deciding factors for the maximum trapped particles. In addition, we demonstrate that the collected particles arrange themselves in a triangular, closed, packed state, similar to what has been observed in experiments. Our study reveals that the interplay between stiffness and active forces induces morphological changes in the polymer during particle transport, suggesting novel ways of designing robophysical models for particle collection and transport.

Boundary design regulates the diffusion of active matter in heterogeneous environments.

Physical boundaries play a key role in governing the overall transport properties of nearby self-propelled particles. In this work, we develop dispersion theories and conduct Brownian dynamics simulations to predict the coupling between surface accumulation and effective diffusivity of active particles in boundary-rich media. We focus on three models that are well-understood for passive systems: particle transport in (i) an array of fixed volume-excluding obstacles; (ii) a pore with spatially heterogeneous width; and (iii) a tortuous path with kinks and corners. While the impact of these entropic barriers on passive particle transport is well established, we find that these classical models of porous media flows break down due to the unique interplay between activity and the microstructure of the internal geometry. We study the activity-induced slowdown of effective diffusivity by formulating a Smoluchowski description of long-time self diffusivity which contains contributions from the density and fluctuation fields of the active particles. Particle-based and finite element simulations corroborate this perspective and reveal important nonequilibrium considerations of active transport.

Rail configuration for lateral particle transport across intact co-flows: effect of wall and rail geometry on liquid and particle transport.

Layer-by-Layer coating technology is of great importance for many applications of microparticles whereby exposure of the particles to various reagents is needed. Mutual contamination of the reagents during this process is a key challenge, and this undesired effect should be avoided. Here we introduce a device that provides subsequent exposure of particles to various liquids and minimizes mixing of the liquids at the same time. The key element of the device is a rail (groove) at the bottom of a microfluidic channel. The rail forms an angle (between 0 and 90 degrees) and thus enables passive transport of particles through the intact co-flows of the different fluids. To avoid the undesirable effect of reagent stream mixing, internal walls are introduced to separate the different flows. Various designs of the proposed device are considered, and their performance is experimentally analyzed.

Control and Transport of Passive Particles Using Self-Organized Spinning Micro-Disks

Traditional robotic systems have proven to be instrumental in object manipulation tasks for automated manufacturing processes. Object manipulation in such cases typically involves transport, pick-and-place and assembly of objects using automated conveyors and robotic arms. However, the forces at microscopic scales (e.g., surface tension, Van der Waals, electrostatic) can be qualitatively and quantitatively different from those at macroscopic scales. These forces render the release of objects difficult, and hence, traditional systems cannot be directly transferred to small scales (below a few millimeters). Consequently, novel micro-robotic manipulation systems have to be designed to take into account these scaling effects. Such systems could be beneficial for micro-fabrication processes and for biological studies. Here, we show autonomous position control of passive particles floating at the air-water interface using a collective of self-organized spinning micro-disks with a diameter of <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><tex-math notation="LaTeX">${300}\,{\mathrm {\mu m}}$</tex-math></inline-formula> . First, we show that the spinning micro-disks collectives generate azimuthal flows that cause passive particles to orbit around them. We then develop a closed-loop controller to demonstrate autonomous position control of passive particles without physical contact. Finally, we showcase the capability of our system to split from an expanded to several circular collectives while holding the particle at a fixed target. Our system’s contact-free object manipulation capability could be used for transporting delicate biological objects and for guiding self-assembly of passive objects for micro-fabrication.

A Study of the Potential Impact of Dredging the Corpus Christi Ship Channel on Passive Particle Transport

We present a study of the potential impact of deepening the Corpus Christi Ship Channel through Aransas Pass; in particular, we study the effect on the transport of red drum fish larvae due to the change in channel depth. The study was conducted by high resolution simulation of the circulation of the seawater entering and exiting the pass for the current and proposed Ship Channel depths. The computer model incorporates tides and meteorological forcing and includes the entire Gulf of Mexico and the North American Atlantic coast. The corresponding transport of larvae modeled as passive particles due to the sea water circulation is established by releasing particles in the nearshore region outside Aransas Pass and subsequently tracking their trajectories. We compare the difference in the number of larvae that successfully reach appropriate nursery grounds inside Aransas Pass for four distinctive initial larvae positions in the nearshore region. Our results indicate that the change in channel depth does not significantly alter the number of red drum larvae that reach suitable nursery grounds, overall, across all considered scenarios, we see a net increase of 0.5%.

Active control of transport through nanopores

The passive particle transport through narrow channels is well studied, while for an active particle system, it is not well understood. Here, we demonstrate the active control of the transport through a nanopore via mean-field analysis and molecular dynamics simulations. We prove that the active force enhances the transport efficiency with an effective diffusion coefficient Deff=Dt(1+Pe2/6), where Dt is the translational diffusion coefficient and Pe is the Péclet number that determines the strength of the active force. For the number of particles inside the channel, it experiences subdiffusion at short times and then turns to normal at longer times. Finally, we extend our research for several sinusoidal shapes of the channel surface. More particles are trapped in the channel if the roughness of the channel surface is increased, resulting in fewer particles are transported from one side of the channel to the other.

Dorado: A Python package for simulating passive particle transport in shallow-water flows

dorado: A Python package for simulating passive particle transport in shallow-water flows

Bifurcation of relative equilibria generated by a circular vortex path in a circular domain

We study the passive particle transport generated by a circular vortex path in a 2D ideal flow confined in a circular domain. Taking the strength and angular velocity of the vortex path as main parameters, the bifurcation scheme of relative equilibria is identified. For a perturbed path, an infinite number of orbits around the centers are persistent, giving rise to periodic solutions with zero winding number.

Visible-Light-Driven Single-Component BiVO4 Micromotors with the Autonomous Ability for Capturing Microorganisms.

Light-driven micro/nanomotors represent the next generation of automotive devices that can be easily actuated and controlled by using an external light source. As the field evolves, there is a need for developing more sophisticated micromachines that can fulfill diverse tasks in complex environments. Herein, we introduce single-component BiVO4 micromotors with well-defined micro/nanostructures that can swim both individually and as collectively assembled entities under visible-light irradiation. These devices can perform cargo loading and transport of passive particles as well as living microorganisms without any surface functionalization. Interestingly, after photoactivation, the BiVO4 micromotors exhibited an ability to seek and adhere to yeast cell walls, with the possibility to control their attachment/release by switching the light on/off, respectively. Taking advantage of the selective motor/fungal cells attachment, the fungicidal activity of BiVO4 micromotors under visible illumination was also demonstrated. The presented star-shaped BiVO4 micromotors, obtained by a hydrothermal synthesis, contribute to the potential large-scale fabrication of light-powered micromotors. Moreover, these multifunctional single-component micromachines with controlled self-propulsion, collective behavior, cargo transportation, and photocatalytic activity capabilities hold promising applications in sensing, biohybrids assembly, cargo delivery, and microbiological water pollution remediation.

Effective transport of passive particles induced by chiral-active particles in microchannel**Project supported by the National Natural Science Foundation of China (Grant Nos. 21374102, 21674096, and 21674082).

Transport of passive particles induced by chiral-active particles in microchannel is investigated by using the overdamped Langevin dynamics simulation in a two-dimensional model system. Due to the chirality of active particles and special structure of microchannel, effective ratchet transport of passive particles is achieved. Effective transport of passive particles depends on the width of microchannel (d), the density (ρ), and the angular velocity (ω) of chiral-active particles. There exist optimal parameters for d and ω at which the transport efficiency for passive particles takes its maximal value. This investigation can help us understand the necessity of active motion for living systems to maintain a number of vital processes such as materials transport inside cells and the foraging dynamics of mobile organisms.

Modeled Population Connectivity across the Hawaiian Archipelago.

We present the first comprehensive estimate of connectivity of passive pelagic particles released from coral reef habitat throughout the Hawaiian Archipelago. Potential connectivity is calculated using a Lagrangian particle transport model coupled offline with currents generated by an oceanographic circulation model, MITgcm. The connectivity matrices show a surprising degree of self-recruitment and directional dispersal towards the northwest, from the Main Hawaiian Islands (MHI) to the northwestern Hawaiian Islands (NWHI). We identify three predicted connectivity breaks in the archipelago, that is, areas in the mid and northern part of the archipelago that have limited connections with surrounding islands and reefs. Predicted regions of limited connectivity generally match observed patterns of genetic structure reported for coral reef species in the uninhabited NWHI, but multiple genetic breaks observed in the inhabited MHI are not explained by passive dispersal. The better congruence in our modeling results based on physical transport of passive particles in the low-lying atolls of the uninhabited NWHI, but not in the anthropogenically impacted high islands of the MHI begs the question: what ultimately controls connectivity in this system?

Numerical modelling of physical processes governing larval transport in the southern North Sea

Abstract. A three-dimensional hydrodynamic model (GETM) was coupled with a particle tracking routine (GITM) to study the inter-annual variability in transport paths of particles in the North Sea and English Channel. For validation, a comparison with observed drifter trajectories is also presented here. This research investigated to what extent variability in the hydrodynamic conditions alone (reflecting passive particle transport) contributed to inter-annual variability in the transport of eggs and larvae. In this idealised study, no a priori selection of specific spawning grounds or periods was made and no active behaviour (vertical migration) or mortality was included. In this study, egg and larval development towards coastal nursery areas was based solely on sea water temperature, while settlement areas were defined by a threshold water depth. Results showed strong inter-annual variability in drift direction and distance, caused by a combination of wind speed and direction. Strong inter-annual variability was observed both in absolute amount of settlement in several coastal areas, and in the relative importance of the different areas. The effects of wind and temperature variability are minor for settlement along the western shores of the North Sea and in the English Channel, but have a very significant impact on settlement along the eastern shores of the North Sea. Years with strong south-westerly winds across the Dover Straight resulted in higher settlement figures along its eastern shores of the North Sea (standard deviation 37% of the mean annual settlement value). Settlement in the western Dutch Wadden Sea did not only show inter-annual variability, but patterns were also variable within each year and revealed seasonal changes in the origin of particles: during winter, stronger currents along with colder temperatures generally result in particles originating from further away.