In South Asia, the sustainability of conventional tillage and input-intensive cereal-based cropping systems (such as rice-rice and rice-wheat) is under scrutiny due to soil organic carbon depletion, stagnant productivity, and adverse environmental impacts stemming from greenhouse gas emissions (N2O, CH4, and CO2). Against this backdrop, a long-term field experiment was initiated in 2009 at three sites in India (Karnal, Patna, and Aduthurai) and one site in Bangladesh (Gazipur) to assess four scenarios (S) reflecting current and future diversified crop rotations and conservation agriculture (CA) practices: S1 - double cereal rotation with conventional practices; S2 - double cereal plus legume rotation with partial CA; S3 - double cereal plus legume rotation with full CA; and S4 - futuristic diversified cereal-legume rotations with full CA. This study delved into the dynamics and stabilization of soil organic carbon across all scenarios and sites. Replicated soil samples were collected from depths of 0–15 cm and 15–30 cm after two crop cycles. We analyzed Walkley-Black carbon (WBC), total organic carbon (TOC), and various carbon pools with different oxidizability, determining the amount of carbon stabilized under CA-based scenarios and identifying optimal systems for carbon economy in South Asia. On average, active and passive carbon pools, TOC, and WBC stocks followed the order: S4 > S3 > S2 > S1 at all sites, except Gazipur, where the order was S3 > S4 > S2 > S1. CA practices stabilized applied carbon inputs to soil organic carbon at an annual rate of 1.7 %, with greater stabilization observed under S4 (11.7 %) > S3 (10.6 %) > S2 (7.8 %), regardless of location. Rice-rice sites exhibited a higher carbon stabilization rate (13.4 %) compared to rice-wheat sites (6.7 %). A significant proportion of stabilized carbon (63 %) was allocated to passive pools in soils under S2, S3, and S4, highlighting CA's potential to enhance carbon stability. Using a linear indexing technique, we identified that both S3 and S4 are conducive to better carbon stabilization, yield sustainability, and environmental co-benefits. Consequently, full CA systems with best management practices (S3) and best management practices with crop diversification (S4) are recommended for sustainable crop production in the major double cereal growing regions of South Asia, including India and Bangladesh.