Partial Canonical Correspondence Analysis Research Articles

Response of Chironomids (Diptera, Chironomidae) to Environmental Factors at Different Spatial Scales.

Factors responsible for species distribution of benthic macroinvertebrates, including responses at different spatial scales, have been previously investigated. The aim of the present research was to review the most relevant factors explaining chironomid species distribution focusing on factors operating at different spatial scales, such as latitude, longitude, altitude, substrate, salinity, water temperature, current velocity, conductivity, acidity, dissolved oxygen, nutrient content etc. acting at regional levels and at a large or small water basin level. Data including chironomid species abundances from different lentic and lotic waters in Italy and other surrounding countries were analyzed using partial canonical correspondence analysis (pCCA) and multiple discriminant analysis (DISCR). Spatial analyses, including univariate Moran's I correlograms, multivariate Mantel correlograms and Moran's eigenvector maps (MEMs), were thereafter carried out. The results showed that habitat type, including different types of lotic waters (i.e., kryal, crenal, rhithral, potamal) and different lake types (i.e., littoral, sublittoral, profundal zones), is the most significant factor separating chironomid assemblages, while spatial factors act only as indirect influencers.

Response of Chironomidae (Diptera) to DDT, Mercury, and Arsenic Legacy Pollution in Sediments of the Toce River (Northern Italy).

The Toce River (Northern Italy) is characterized by legacy contamination of dichloro-diphenyl-trichloroethane (DDT), mercury, and arsenic deriving from an industrial plant active between ca. 1915 and 1996. Chironomidae taxa assemblages and sediments were collected in 2014 and 2019 upstream and downstream of the industrial area to analyze species responses to toxic substances in a river stretch with relatively uniform natural (i.e., hydro-morphological) characteristics. A total of 32 chironomid taxa were identified. Sediment concentrations reached levels potentially toxic for benthic invertebrates: 15.7 µg kg-1 1% organic carbon for DDT, 197 µg kg-1 dry weight (d.w.) for Hg, and 55.7 mg kg-1 d.w. for As. Canonical Correspondence Analysis (CCA) revealed a predominant seasonal gradient, followed by an upstream-downstream gradient. Partial CCA indicated that 5.2% of the total variation was associated with sediment contamination. Self-Organizing Maps (SOMs) were used to represent species responses to toxicants. Most species appeared to be tolerant, e.g., Chironomus riparius, Micropsectra atrofasciata, Conchapelopia pallidula, and Polypedilum spp. Sensitivity to contaminants was observed in only a few species: Diamesa spp., Sympotthastia spinifera, and Prodiamesa olivacea to DDT; Potthastia longimanus to Hg; Odontomesa fulva and Microtendipes pedellus to As. The chironomid community was characterized in presence of contamination levels commonly observed in freshwater ecosystems.

Seasonal Variation of the Ecological Water Quality in a Drinking Water Supply Dam Lake in Bongouanou (Côte d’Ivoire)

The Ichthyological Index of Wetlands (IIW), for the monitoring of the water quality of Ehuikro Lake in Bongouanou, was established. Monthly, experimental gillnet fisheries were conducted between July 2017 and June 2018 in Lake Ehuikro (Bongouanou, Ivory Coast). The fish collected were identified and counted each month, as well as the physicochemical parameters measured in-situ. A partial canonical correspondence analysis (pCCA) was used to order fish species along the axes according to physicochemical parameters to explain anthropogenic disturbances. It appears from this analysis that the water of Lake Ehuikro is of "good quality" during the rainy season and of "poor quality" during the dry season.

Variation in Gut Microbiota Composition is Associated with Sleep Quality and Cognitive Performance in Older Adults with Insomnia.

PurposeInsomnia, a chronic condition affecting 50% of older adults, is often accompanied by cognitive decline. The mechanism underlying this comorbidity is not fully understood. A growing literature suggests the importance of gut microbiota for brain function. We tested associations between sleep quality and cognitive performance with gut microbiota in older adults with insomnia.Patients and MethodsSeventy-two older adults with insomnia (age 73.2 ± 5.73 years, 56 females) provided stool samples for gut microbial sequencing. Microbiota profile was determined using the DADA2 bioinformatics pipeline. Cognition was assessed with the Cambridge Neuropsychological Test Automated Battery. Objective sleep quality was monitored by a two-week actigraphic recording, and participants completed the Insomnia Severity Index (ISI). We used partial canonical correspondence analysis (pCCA) to examine the relative contribution of insomnia, based on actigraphic sleep efficiency (SE) and ISI, and of cognitive status, based on the Multitasking test of Median Reaction Latency (MTTLMD) and the Spatial Working Memory Between Errors (SWMBE), to variance in microbiota composition. We used Pearson correlations to correlate insomnia and cognitive status parameters with microbiota amplicon sequence variants, genera, and families.ResultsThe pCCA revealed that sleep quality and cognitive performance explained a variation of 7.5–7.9% in gut microbiota composition in older adults with insomnia. Correlation analysis demonstrated that Lachnoclostridium (genus) correlates positively with SE (r=0.42; P=0.05) and negatively with MTTLMD (r=−0.29; P=0.03), whereas Blautia (genus) correlates negatively with MTTLMD (r=−0.31; P=0.01).ConclusionFindings demonstrate the associations of sleep quality and cognitive performance with variance in gut microbiota composition and with specific genus abundance in older adults with insomnia. Further studies should validate the findings, determine causal relationships, and evaluate potential interventions for the comorbidity of insomnia and cognitive impairment in older adults with insomnia.

Decision support for aquatic restoration based on species-specific responses to disturbance.

Disturbances to aquatic habitats are not uniformly distributed within the Great Lakes and acute effects can be strongest in nearshore areas where both landscape and within lake effects can have strong influence. Furthermore, different fish species respond to disturbances in different ways. A means to identify and evaluate locations and extent of disturbances that affect fish is needed throughout the Great Lakes. We used partial Canonical Correspondence Analysis to separate “natural” effects on nearshore assemblages from disturbance effects. Species‐specific quadratic models of fish abundance as functions of in‐lake disturbance or watershed‐derived disturbance were developed separately for each of 35 species and lakewide predictions mapped for Lake Erie. Most responses were unimodal and more species decreased in abundance with increasing watershed disturbance than increased. However, eight species increased in abundance with current in‐lake disturbance conditions. Optimum Yellow Perch (Perca flavescens) abundance occurred at in‐lake disturbance values less than the gradient mean, but decreased continuously from minimum watershed disturbance to higher values. Bands of optimum in‐lake conditions occurred throughout the eastern and western portions of the Lake Erie nearshore zone; some areas were less disturbed than desirable. However, watershed‐derived disturbance conditions were generally poor for Yellow Perch throughout the lake. In contrast, optimum Smallmouth Bass (Micropterus dolomieu) abundance occurred at in‐lake disturbance values greater than the gradient mean and continuously increased with increasing watershed disturbance. Smallmouth Bass responses to disturbance indicated that most of the nearshore zone was less disturbed than is desirable and were most abundant in areas that the Yellow Perch response indicated were highly disturbed. Mapping counts of species response models that agreed on the disturbance level in each spatial unit of the nearshore zone showed a fine‐scale mosaic of areas in which habitat restoration may benefit many or few species. This tool may assist managers in prioritizing conservation and restoration efforts and evaluating environmental conditions that may be improved.

Ultrashort-term responses of riparian vegetation restoration to adjacent cycles of ecological water conveyance scheduling in a hyperarid endorheic river basin

The management of ecological water conveyance (EWC) can allow riparian vegetation communities to survive the threat of degradation in hyperarid inland areas and promote the health of groundwater-recharged riparian ecosystems. However, the ultrashort-term effects of periodic EWC scheduling on riparian vegetation remain unclear. This study explored the spatiotemporal differentiation in species structure (herbs, shrubs, and trees), diversity (measured by the Simpson, Shannon–Wiener, Pielou, and Margalef indices), stability (evaluated via Godron fitting distances and abundance-biomass comparison curves), and integrity (proxied by the vegetation-based index of biotic integrity) of vegetation communities in the downstream Heihe River Basin, China. Empirical orthogonal function, Pearson correlation, canonical correspondence analysis (CCA), and partial CCA methods were used to evaluate the effects of dominant habitat environmental factors from the hydrogeographic features, soil physicochemical properties, and anthropogenic impacts. The results showed that the riparian vegetation community diversity, stability, and integrity varied moderately to slightly with hierarchical distance from near wetlands (<200 m; containing mainly herbs) to far desert edges (>800 m; occupied by shrubs/subshrubs). The middle transition zone (200–800 m; occupied mostly by trees/subtrees) had the best diversity and integrity but relatively poor stability. The most significant influencing factors were EWC and soil moisture. The simple diversity, fair-level integrity, and disturbed but not irreversibly damaged stability of the vegetation community were generally improved by 14.82%, 20.33%, and 30.57%, respectively, in the pre-EWC period but worsened in the post-EWC period. The difference in spatially distributed EWC quantities caused more apparent vegetation restoration in high water-supplied subareas where certain biological community instability existed. Therefore, adequate EWC management can be considered a prerequisite for the maintenance of high richness and structural stability in local communities and requires a good balance between interregional vegetation abundance and enhanced environmental tolerance.

Effects of large herbivore grazing on relics of the presumed mammoth steppe in the extreme climate of NE-Siberia

The Siberian mammoth steppe ecosystem changed dramatically with the disappearance of large grazers in the Holocene. The concept of Pleistocene rewilding is based on the idea that large herbivore grazing significantly alters plant communities and can be employed to recreate lost ecosystems. On the other hand, modern rangeland ecology emphasizes the often overriding importance of harsh climates. We visited two rewilding projects and three rangeland regions, sampling a total of 210 vegetation relevés in steppe and surrounding vegetation (grasslands, shrublands and forests) along an extensive climatic gradient across Yakutia, Russia. We analyzed species composition, plant traits, diversity indices and vegetation productivity, using partial canonical correspondence and redundancy analysis. Macroclimate was most important for vegetation composition, and microclimate for the occurrence of extrazonal steppes. Macroclimate and soil conditions mainly determined productivity of vegetation. Bison grazing was responsible for small-scale changes in vegetation through trampling, wallowing and debarking, thus creating more open and disturbed plant communities, soil compaction and xerophytization. However, the magnitude of effects depended on density and type of grazers as well as on interactions with climate and site conditions. Effects of bison grazing were strongest in the continental climate of Central Yakutia, and steppes were generally less affected than meadows. We conclude that contemporary grazing overall has rather limited effects on vegetation in northeastern Siberia. Current rewilding practices are still far from recreating a mammoth steppe, although large herbivores like bison can create more open and drier vegetation and increase nutrient availability in particular in the more continental Central Yakutian Plain.

Do Anthropogenic Activities Affect Floristic Diversity and Vegetation Structure More Than Natural Soil Properties in Hyper-Arid Desert Environments?

Egypt is characterized by its hyper-arid desert environment with high temperature, scanty rainfall, high evapotranspiration rate, and patchy scattered precipitation-dependent vegetation. Located in this peculiar ecosystem, the northeastern part of the eastern desert occupies vast areas where this study was conducted. Despite some protection in this area, destruction of plant cover, soil erosion, and degradation of natural habitat are still occurring. Among the complex array of anthropogenic disturbances that directly affect species diversity, over-grazing, road construction, over-collection of plants, salinization, over-cutting, military activities, urbanization, and industrialization were encountered. The aim of this study was to assess the effect on long-lasting anthropopressure on the current floristic and ecological status of the unprotected area in comparison to the protected one. Two areas were chosen for detailed studies: protected (Wadi Degla; WD) and unprotected (Cairo-Suez road, SR). Fourteen soil variables were used to assess the soil–vegetation relationships in the two areas. An assessment of seven human activities (over-grazing, over-collection, introduced species, land degradation, urbanization, solid wastes, and military activities) was carried out at four levels of disturbance intensities. A floristic presence/absence data set of 25 plots × 56 species, including 14 plots for SR and 11 plots for WD, was employed in the analyses. The application of multivariate analysis techniques such as cluster analysis (for classification), indicator species analysis (ISA) and the multi-response permutation procedure (MRPP), canonical correspondence analysis (CCA), and redundancy analysis (RDA) for ordination were performed in the data analysis. Generally, a total of 85 plant species belonging to 68 genera and 30 families was recorded. Asteraceae, Chenopodiaceae, Fabaceae, Zygophyllaceae, Poaceae, Brassicaceae, and Geraniaceae were the largest families, constituting more than 50% of the total flora. Chamaephytes, therophytes, hemicryptophytes, and phanerophytes prevail in the life form spectrum. Chorological analysis showed that the Saharo-Arabian element, whether pure or combined with other chorotypes, dominated the current flora, whereas the Mediterranean chorotype was very poorly represented. Application of cluster analysis yielded eight vegetation groups: I–IV for the Cairo-Suez road, and V–VIII for Wadi Degla. This study indicated the disappearance of several plant communities that were previously of common occurrence such as Retama raetam, Anabasis articulata, Ephedra alata, Artemisia monosperma, Zygophyllum decumbens, Lasiurus hirsutus, and Panicum turgidum. Partial CCA (pCCA) for the unprotected area revealed that most of the variance (45.7%) was attributed to the anthropogenic variables more than soil factors (14.5%). Like what was revealed in other unprotected areas, a clear relationship between anthropogenic pressure and habitat fragmentation was observed. Long-term, intensive human activities caused vegetation degradation, species loss, and a decline in plant richness. Hence, the highest species richness value was recorded in the protected area. Over-grazing, land degradation, and military activities were not correlated with the diversity indices, whereas over-collection of plant species, urbanization, and solid wastes were significantly negatively correlated with both α-diversity and the Shannon–Wiener index. Suitable protection measures should be taken to reduce the anthropogenic pressures in this ecosystem as well as some conservation programs and management plans should be implemented to save biodiversity.

Premating barriers in young sympatric snail species

Sympatric coexistence of recently diverged species raises the question of barriers restricting the gene flow between them. Reproductive isolation may be implemented at several levels, and the weakening of some, e.g. premating, barriers may require the strengthening of the others, e.g. postcopulatory ones. We analysed mating patterns and shell size of mates in recently diverged closely related species of the subgenus Littorina Neritrema (Littorinidae, Caenogastropoda) in order to assess the role of premating reproductive barriers between them. We compared mating frequencies observed in the wild with those expected based on relative densities using partial canonical correspondence analysis. We introduced the fidelity index (FI) to estimate the relative accuracy of mating with conspecific females and precopulatory isolation index (IPC) to characterize the strength of premating barriers. The species under study, with the exception of L. arcana, clearly demonstrated preferential mating with conspecifics. According to FI and IPC, L. fabalis and L. compressa appeared reliably isolated from their closest relatives within Neritrema. Individuals of these two species tend to be smaller than those of the others, highlighting the importance of shell size changes in gastropod species divergence. L. arcana males were often found in pairs with L. saxatilis females, and no interspecific size differences were revealed in this sibling species pair. We discuss the lack of discriminative mate choice in the sympatric populations of L. arcana and L. saxatilis, and possible additional mechanisms restricting gene flow between them.

Compartmentalized organization of ecological niche occupation in insular invertebrate communities.

Understanding the mechanisms of species distribution within ecosystems is a fundamental question of ecological research. The current worldwide changes and loss of habitats associated with a decline in species richness render this topic a key element for developing mitigation strategies. Ecological niche theory is a widely accepted concept to describe species distribution along environmental gradients where each taxon occupies its own distinct set of environmental parameters, that is, its niche. Niche occupation has been described in empirical studies for different closely related taxa, like ant, ungulate, or skink species, just to name a few. However, how species assemblages of whole ecosystems across multiple taxa are structured and organized has not been investigated thoroughly, although considering all taxa of a community would be essential when analyzing realized niches. Here, we investigated the organization of niche occupation and species distribution for the whole ground‐associated invertebrate community of small tropical insular ecosystems. By correlating environmental conditions with species occurrences using partial canonical correspondence analysis (pCCA), we demonstrated that the ground‐associated invertebrate community does not spread evenly across the overall niche space, but instead is compartmentalized in four distinct clusters: crustacean and gastropod taxa occurred in one cluster, attributable to the beach habitat, whereas hexapods and spider taxa occurred in three distinct inland clusters, attributable to distinct inland habitats, that is, grassland, open forest, and dense forest. Within the clusters, co‐occurrence pattern analysis suggested only a few negative interactions between the different taxa. By studying ground‐associated insular invertebrate communities, we have shown that species distribution and niche occupation can be, similar to food webs, organized in a compartmentalized way. The compartmentalization of the niche space might thereby be a mechanism to increase ecosystem resilience, as disturbances cascade more slowly throughout the ecosystem.

Environmental variables driving species composition in subarctic springs in the face of climate change

AbstractQuestionsWhich environmental variables are most important in determining plant species composition in subarctic springs? Do observed patterns differ between typical wetland and general matrix‐derived species?LocationHelocrenic (seepage) springs, Northern Norway.MethodsWe sampled 49 helocrenic spring sites, measuring environmental variables (water temperature, water pH, electrical conductivity, discharge volume, geographic position) and recording all species present. We performed a partial canonical correspondence analysis (pCCA) to determine the relative importance of water quality, spatial, and climatic variables for patterns in species composition and to compare the differences in these patterns between wetland and matrix‐derived species.ResultsWe found that climatic and water quality variables were almost equally important in determining species composition in subarctic springs, with climatic variables explaining 26.62% of variation in species composition and water quality variables explaining 26.14%. Spatial variables explained the least variation (21.53%). When looking at the variables individually, altitude (10.93%) and mean summer temperature (9.25%) explained the most variation. The trend was the same for matrix‐derived species and wetland species, with climatic variables explaining the most variation (matrix‐derived: 27.26%; wetland: 24.42%), followed by water quality (matrix‐derived: 26.40%; wetland: 24.13%) and spatial variables (matrix‐derived: 24.87%; wetland: 16.27%). The main difference between matrix‐derived species and typical wetland species was that the spatial variables explained less variation for wetland species.ConclusionsThe close relationship of species composition (total vegetation as well as separated into wetland and matrix‐derived species) with climatic and water quality conditions indicates a sensitivity of subarctic springs to future climate change. In combination with altitude, which was found to be the most important individual variable, it is likely that the future distribution of spring species tracking climate change will be limited by the occurrence of suitable spring habitats, especially at high altitudes.

Diversity of mosquito (Diptera: Culicidae) vectors in a heterogeneous landscape endemic for arboviruses

BackgroundIn Brazil and several countries in the Americas, where dengue, chikungunya and Zika are cocirculating, there is a need to understand how different mosquito species relate to landscape and humans. Mosquito ecology and distribution, especially at finer spatial scales, are key factors to study since the relationship of mosquito communities to their habitats might have important consequences in the risk of disease transmission to humans. The aim of this study was to evaluate the diversity of resident culicids along heterogeneous landscapes in different endemic cities for dengue, chikungunya and Zika. MethodsFourteen collection sites were randomly selected in six landscapes characterized as urban, periurban and rural along two endemic metropolitan cities in Rio de Janeiro, Brazil: Itaboraí and Cachoeiras de Macacu, Rio de Janeiro. In each site, adult mosquito collections were performed using different traps and backpack aspiration. Collections took place during the rainy and dry seasons of 2015 and 2016. To measure diversity in each landscape, we generated species accumulation curves and used different indexes: rarefied species richness, Chao1-bc and ACE-1. Mosquito habitat segregation along different land use types was measured with a partial canonical correspondence analysis (pCCA). Generalized linear mixed models (GLMM) were used to model the probability of occurrence of the most abundant species along an Urban-Forest gradient. ResultsA total of 13,462 adult mosquitoes from 10 genera and 41 species were collected. The most abundant species were Culex quinquefasciatus Say, 1823, Aedes aegypti (Linnaeus, 1762) and Aedes albopictus (Skuse, 1895). There was a significant association between rarefied species richness and landscape, with higher richness in the Rural landscape. The number of observed species was matched only in the Urban landscape. Most species showed segregation along an Urban-Forest gradient, and the great majority were associated with forested habitats. We were able to fit prediction models for six mosquito species. DiscussionThe paper discusses the impact of human activities on landscape and its effects on mosquito populations, focusing on the segregation of different known vector species and their proximity to human altered environments. Most of these species are known arbovirus vectors and knowledge of their distribution are key elements that health authorities should take into account when planning arbovirus surveillance and vector control activities.

Multilevel decomposition of spatial and environmental effects on nearshore fish assemblages in tropical semi-enclosed ecosystems

We investigated the effects of local- and landscape-scale environmental variables and spatial structure at three hierarchical levels (i.e. type of system, individual systems, and zones within each system) on the fish species composition and abundance in bays and coastal lagoons in southeastern Brazil. The effects were assessed at the assemblage level, and between and within habitat use groups. Exclusive and shared effects of environmental, hierarchical, and spatial variable sets were quantified by variation partitioning, and individual environmental effects were assessed by partial canonical correspondence analyses. The hierarchical and spatial structures were more relevant for habitat use groups less widespread due to the lower dependence on estuarine areas, and influenced primarily the landscape-scale environmental differences between individual systems. At the assemblage level, the exclusively environmental effects were primarily indicative of the marine (e.g., higher depth, pH, and transparency) versus continental (e.g., greater distance from the ocean and mangrove cover) influence. Estuarine, marine migrant, and marine straggler species were more widespread across these gradients, but the former species were primarily associated with greater mangrove cover and the marine stragglers with a higher marine influence. Semi-diadromous and freshwater species were less associated with greater mangrove cover and primarily restricted to coastal lagoons. The different multi-scale environmental effects within each group reinforced the relevance of intra- and inter-specific differences in environmental tolerances and requirements, and evidenced the relevance of the connectivity between alternative habitats in maintaining the structure of fish assemblages. Disentangling multilevel spatial and environmental effects, this study evidenced the critical roles of the maintenance of the environmental heterogeneity in nearby estuarine habitats for nearshore fish assemblages in different types of tropical semi-enclosed estuarine ecosystems.

Disentangling the Effects of Multiple Stressors on Large Rivers Using Benthic Invertebrates—A Study of Southeastern European Large Rivers with Implications for Management

Predicting anthropogenic actions resulting in undesirable changes in aquatic systems is crucial for the development of effective and sustainable water management strategies. Due to the co-occurrence of stressors and a lack of appropriate data, the effects on large rivers are difficult to elucidate. To overcome this problem, we developed a partial canonical correspondence analyses (pCCA) model using 292 benthic invertebrate taxa from 104 sites that incorporated the effects of three stressors groups: hydromorphology, land use, and water quality. The data covered an environmental gradient from near-natural to heavily altered sites in five large rivers in Southeastern Europe. Prior to developing the multi-stressor model, we assessed the importance of natural characteristics on individual stressor groups. Stressors proved to be the dominant factors in shaping benthic invertebrate assemblages. The pCCA among stressor-groups showed that unique effects dominated over joint effects. Thus, benthic invertebrate assemblages were suitable for disentangling the specific effect of each of the three stressor groups. While the effects of hydromorphology were dominant, both water quality and land use effects were nearly equally important. Quantifying the specific effects of hydromorphological alterations, water quality, and land use will allow water managers to better understand how large rivers have changed and to better define expectations for ecosystem conditions in the future.

Minimum influent concentrations of oxytetracycline, streptomycin and spiramycin in selecting antibiotic resistance in biofilm type wastewater treatment systems

It has been demonstrated that antibiotic resistance could be induced and selected under high antibiotic concentrations in biological wastewater treatment systems. However, little is available regarding the minimum concentrations of antibiotics for selecting antibiotic resistance during wastewater treatment. Herein, the minimum influent concentrations of oxytetracycline, streptomycin, and spiramycin in selecting antibiotic resistance in biofilm type wastewater treatment systems were investigated by spiking respective antibiotic into wastewater with an antibiotic dose increasing from 0 to 0.1, 1, 5, 25, 50 mg/L stepwise over a period of 606 days. Significant increase (p < .01) in the total abundance of antibiotic resistance genes was observed for both streptomycin and oxytetracycline at a dose of 0.1 mg/L according to metagenomic sequencing, while the concentration levels leading to significant increases (p < .05) in resistant bacteria ratio were higher: 5 mg/L for streptomycin and 25 mg/L for oxytetracycline. Although resistome abundance increased with the increase of spiramycin dose, neither the corresponding Macrolide-Lincosamide-Streptogramin (MLS) resistance genes nor the resistant bacteria ratio showed perceptible increase. Partial canonical correspondence analysis showed that both bacterial community shift and mobile genetic elements alteration contributed to the enrichment of resistomes under the presence of streptomycin and oxytetracycline. Regarding spiramycin which is mainly targeting on Gram-positive bacteria, the dominance of the intrinsically resisting Gram-negative bacteria in the biofilm microbiota might be responsible for the vague change of MLS resistant determinants under the spiramycin stress. The results demonstrated that it is possible to prevent the development of antibiotic resistance during wastewater treatment by controlling the influent streptomycin and oxytetracyline concentrations below 0.1 mg/L. This work proposed an actionable approach for the management of antibiotic production wastewater.

Detecting the driving forces underlying the divergence of spruce forests in China: evidence from phytocoenology, morphology and phylogenetics

Abstract Aims We aimed to elucidate the driving forces underlying the geographical distribution of spruce forests, as well as the morphological and phylogenetic divergence among spruce species in China. Methods One hundred and seventy two sites across the entire range of spruce forests in China (23°–53° N, 75°–134° E, 250–4300 m a.s.l.) were sampled for species composition, geographical coordinates, and topographic and climatic variables. Sixteen spruce taxa, which are naturally distributed in China, were respectively grouped into morphologically defined sections and phylogenetically distinct clades. Multivariate approaches, including two-way indicator species analysis, principal components analysis, detrended correspondence analysis, canonical correspondence analysis (CCA), and partial CCA, were used for data analysis. Important Findings The 172 samples grouped into 13 spruce forests, the geographical distributions of which were closely related to climate and geographical location. The variation in species composition explained by the geographical coordinates (32.01%) was significantly higher than that explained by the climatic (27.76%) and topographic variables (23.32%). Of the three morphologically defined sections, sect. Omorica occurred mainly in wetter habitats with a mean annual precipitation of ca. 229 mm and 426 mm higher than the habitats of sect. Casicta and sect. Picea (P &amp;lt; 0.01), respectively. Of the two phylogenetically distinct clades, Clade-II (an older clade) occurred in habitats with warm winters and cool summers whose mean temperature in the coldest month was ca. 8–10°C higher, yet accumulated temperature during the growing season (≥ 5°C) was ca. 297–438°C lower, than the habitats of Clade-III (a younger clade) (P &amp;lt; 0.01). Our data support the hypothesis that geographical location may be a greater determinant of variation in species composition. In addition, moisture conditions tend to be the key determinants that account for the divergence among the morphologically defined sections, while the phylogenetic divergence among spruce species is mainly affected by temperature conditions. While the clades or sections of the spruce species in question carry strong climatic signals, their divergences are subject to different selective pressures.

Developmental dynamics of antibiotic resistome in aerobic biofilm microbiota treating wastewater under stepwise increasing tigecycline concentrations

This study aimed to investigate the impact of tigecycline, the third generation tetracycline, on the antibiotic resistance development in environmental microbiota. Two biological contact oxidation reactors containing aerobic biofilm microbiota were constructed, one of which was constantly fed with synthetic wastewater spiked with increasing concentrations of tigecycline (0 to 25 mg/L) under a hydrolytic retention time of 24 h. Over a period of 636 days, chemical oxygen demand removal over 90% and complete nitrification were achieved for both the control and tigecycline-exposed reactors, and effluent tigecycline concentrations in the tigecycline-exposed system were always <0.051 mg/L. Significant increases (p < 0.01) in resistome abundance and resistant bacteria ratio were detected at a tigecycline dose of 10 and 25 mg/L, respectively, revealed by metagenomic sequencing and culture-based method. The increase of resistome in the tigecycline system was mainly attributed to the enrichment of tetX, one cooperative tetracycline degrading gene. Partial canonical correspondence analysis showed that the change of resistome was mainly driven by bacterial community shift (vertical pathway). Network and genome binning analyses further suggested that the proliferation of Flavobacterium harboring tetX contributed to a relatively low community-wide resistance development in the aerobic biofilm microbiota under tigecycline selection by reducing the antibiotic concentration. This work provides scientific bases for the management and evaluation of the resistance risk induced by this novel antibiotic.

Soil chemical properties and geographical distance exerted effects on arbuscular mycorrhizal fungal community composition in pear orchards in Jiangsu Province, China

Arbuscular mycorrhizal fungi (AMF) are considered to be natural biofertilizers because they provide the host with mineral nutrients, particularly phosphorus. However, there is insufficient information on AMF community compositions and their determining factors in pear orchard soils. In this study, hypotheses tested were that both soil characteristics and geographical distance influence the variation in AMF community composition. The community composition and diversity of AMF were examined using MiSeq sequencing in nine pear orchard soils in Jiangsu Province, China. Our data showed that a total of 108 operational taxonomic units (OTUs) were identified, with the majority belonging to Glomus (>90%). Nonmetric multidimensional scaling (NMDS) plots and PERMANOVA based on Bray-Curtis distance showed a clear separation of soil samples, suggesting significant dissimilarities in the AMF communities among the nine sampling sites. Distance-decay relationship (DDR) curves revealed that both geographical distance and soil chemical properties affect AMF community composition. Canonical correspondence analysis (CCA) and forward selection were used to examine the significance of environmental factors in more detail, and found that soil chemical properties and geographical distance correlated with AMF community composition. Particularly, pH, available phosphorus (AP) and Cu were the most significant soil properties that affected AMF communities. Partial CCA demonstrated that soil chemical properties exerted the primary influence on the assembly of the AMF communities in pear orchard soils, while geographical distance was less influential, which was supported by a partial Mantel analysis. Overall, we concluded that soil chemical properties and geographical distance were important parameters that affected AMF communities in Jiangsu Province, China, and the soils with moderate level of AP and low contents of heavy metals may preserve diverse AMF communities.

Thermophilic anaerobic digestion reduces ARGs in excess sludge even under high oxytetracycline concentrations

The feasibility of thermophilic anaerobic digestion (AD) for the attenuation of antibiotic resistance genes (ARGs) in biomass wastes under high antibiotic concentrations remains unclear. In this study, a thermophilic completely stirred digester (55 °C) was fed with municipal excess sludge spiked with increasing concentrations of oxytetracycline (OTC) (0–1000 mg/L) over a period of 280 days. Results showed that thermophilic AD could maintain stable methane production (338.40 ± 26.26 mL/d/gVS) even at an OTC dose of 1000 mg/L with the sludge phase OTC concentration reaching around 24,000 mg/kg. More important, the abundance of resistome detected by high-throughput quantitative PCR in the substrate was reduced (p < 0.01) by 55.54%–86.27% by thermophilic AD over the whole period. Partial canonical correspondence and network analyses showed that the reduction of ARGs was achieved mainly through two ways: eliminating the original hosts of ARGs in the substrate (from 41.74% ± 2.60% in the substrate to 12.08% ± 1.02% in digested sludge), and blocking the horizontal proliferation of ARGs in the digested sludge by reducing the abundance of mobile genetic elements and restricting their horizontal exchange within a small number of thermophilic genera. This study showed that thermophilic AD is feasible for the attenuation of ARGs in biomass even containing high level of OTC.

Multiple stressors and the role of hydrology on benthic invertebrates in mountainous streams

Hydrological alteration of rivers is recognised as a major threat to lotic biodiversity acting at broad spatial scales, however, the effect size and pathways of hydrology are rarely quantified in comparison with other stressors such as land use and physico-chemistry. Here we present a multiple stressor study that aims to disentangle the effect sizes and pathways of hydrological alteration on benthic invertebrate community structure and functional metrics. Therefore, we analyse the following four multiple stressor groups: land use, hydrology, physical habitat structure, and physico-chemistry at 51 sites including 72 surveys in the German mountain range. Stressor data were contrasted to benthic invertebrate data using partial canonical correspondence analysis to quantify the community-level response and path analysis to investigate the cause-effect pathway structure of single stressors affecting benthic invertebrate metrics either directly or indirectly (i.e. mediated by other stressors). Hydrological stressors showed a strong impact on community structure, with its unique effects being more dominant than those of any other stressor group. Path analysis confirmed strong direct effects of hydrological stressors on biological metrics but revealed land use to be the most influential stressor group in terms of the sum of direct and indirect effects on biology. Notably, indirect land use effects are mediated by hydrology. Our findings suggest a key role of hydrological stressors in lotic ecosystem assessment, which, however, are rarely addressed in operational river monitoring and management. In light of the wide-spread availability of hydrological data from gauging stations throughout Europe, we plea for a better involvement of hydrological data in river basin management.