Large-scale assessments of fish and shellfish populations may be valuable for identifying the impacts of fishing pressure on stocks, but they are rarely possible due to a lack of long-term datasets. In this study, a two-part mixed-effect model for lognormal data was used to obtain historical abundance indices for 16 priority fish and shellfish stocks in the Azores region derived from catch per unit effort (kg per day at sea per vessel) and landing per unit effort (kg per landing per vessel). This data was obtained over the past 30 years under the EC Data Collection Framework and, in addition to information on effort and catch, included details about the fishing operation such as quarter, vessel length and fishing gear. This information was analysed to investigate how abundance indices changed over the years, verify if trends from different data sources were different and, if possible, relate these results to the population and fishery dynamics. The abundance indices derived from both datasets were generally in agreement with each other. Declining trends have been observed for some commercially important species, such as forkbeard Phycis phycis, European conger Conger conger, parrotfish Sparisoma cretense, red scorpionfish Scorpaena scrofa, offshore rockfish Pontinus kuhlii, common spiny lobster Palinurus elephas, splendid alfonsino Beryx splendens and alfonsino B. decadactylus, which is concerning because they are particularly slow-growing, long-lived and have low natural mortality, making them susceptible to overfishing. The results of this study are very important and should help future stock assessment and management initiatives.
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