This study aimed to evaluate the effects of deteriorated physicochemical conditions in the river Jhelum on parasitic infestations and to investigate the potential of fish parasites as bioindicators of water quality. All the physicochemical parameters exhibited statistically significant differences based on both site and season (p < 0.01).The interaction term (Site × Season) was also kept in the model since it was statistically significant (p < 0.01). A parasitological survey of 360 schizothoracine fish revealed a 30.3% prevalence (109/360) of endohelminth infection. The study identified four predominant parasitic taxa across two distinct classes: Cestoda, including Adenoscolex oreini and Schyzocotyle acheilognathi, and Acanthocephala, comprising Pomphorhynchus kashmirensis and Neoechinorhynchus manasbalensis. For the assessment of parasitic load, we calculated the prevalence, mean intensity, mean abundance, and index ofinfection for each sampling period. Correspondence analysis identified associations between parasite occurrence and specific water quality parameters. Regression analysis, including R2 and p values, demonstrated a positive correlation between the number of parasites and both the proportion of infected fish and the ratio of infected to examined fish. Given that parasitic load is significantly influenced by a range of water quality parameters, fish parasites can serve as a robust indicator of declining water quality. Fish parasites are highly sensitive to water quality changes such as pollutants, toxins, and fluctuations in pH, temperature, and oxygen levels. Deteriorating water quality can stress fish, compromising their immune systems and increasing their susceptibility to parasitic infections. Additionally, complex life cycles of parasites can be disrupted by poor water conditions, making them indicators of water quality issues.