Paraphyletic Clade Research Articles

Integrative taxonomy of a new giant deep-sea caudofoveate from South China Sea cold seeps

Caudofoveata is a class of worm-like molluscs (aplacophorans) that typically have an infaunal lifestyle, burrowing in soft bottoms in a wide range of marine habitats from shallow to deep waters. Here, we describe a very large new species of caudofoveate from South China Sea methane seeps growing up to 154 mm in length: Chaetoderma shenloongsp. nov. It is the first caudofoveate to be named from a chemosynthetic ecosystem and the first aplacophoran mollusc associated with seeps. Our new species stands out from other Pacific Chaetoderma species by its large size, a wide body relative to its length, a barely sclerotised radula, and the presence of isosceles-triangular sclerites. Phylogenetic reconstruction using the mitochondrial cytochrome c oxidase subunit I (COI) gene placed it within a paraphyletic clade comprising Chaetodermatidae and Limifossoridae, in line with a previous phylogenetic analysis. This also revealed that C. shenloongsp. nov. is conspecific with a Chaetoderma sp. whose whole genome was recently sequenced and assembled but remained undescribed until now. The most closely related species with an available COI sequence was C. felderi, the largest caudofoveate species recorded. Our discovery suggests caudofoveates may be present in other seeps globally but so far neglected; a potential example is C. felderi from the Gulf of Mexico, where seeps are abundant but whose exact habitat remains unclear.

Sporosarcina jeotgali sp. nov., Sporosarcina oncorhynchi sp. nov., and Sporosarcina trichiuri sp. nov., Isolated from Jeotgal, a Traditional Korean Fermented Seafood.

Three novel, Gram-stain-positive, obligate aerobic, catalase- and oxidase-positive bacterial strains, designated B2O-1T, T2O-4T, and 0.2-SM1T-5T, were isolated from jeotgal, a traditional Korean fermented seafood. Strains B2O-1T, T2O-4T, and 0.2-SM1T-5T exhibited distinct colony colors, characterized by pink, yellow, and red opaque circular colonies, respectively. Phylogenetic analysis revealed that three strains formed a paraphyletic clade within the genus Sporosarcina and shared < 99.0% similarity with Sporosarcina aquimarina KCTC 3840T and Sporosarcina saromensis KCTC 13119T in their 16S rRNA gene sequences. The three strains exhibiting Orthologous Average Nucleotide Identity values < 79.3% and digital DNA-DNA hybridization values < 23.1% within the genus Sporosarcina affirmed their distinctiveness. Strains B2O-1T, T2O-4T, and 0.2-SM1T-5T contained MK-7 as a sole respiratory menaquinone and A4α type peptidoglycan based on lysine with alanine, glutamic acid, and aspartic acid. The common polar lipids include diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine. Strain T2O-4T contained one unidentified phospholipid, whereas strain 0.2-SM1T-5T contained two unidentified phospholipids. Cellular fatty acid profiles, with C15:0 anteiso as the major fatty acid, supported the affiliation of the three strains to the genus Sporosarcina. Based on the polyphasic characteristics, strains B2O-1T (= KCTC 43506T = JCM 36032T), T2O-4T (= KCTC 43489T = JCM 36031T), and 0.2-SM1T-5T (= KCTC 43519T = JCM 36034T) represent three novel species within the genus Sporosarcina, named Sporosarcina jeotgali sp. nov., Sporosarcina oncorhynchi sp. nov., and Sporosarcina trichiuri sp. nov., respectively.

Morphogenesis of an anaerobic ciliate Heterometopus palaeformis (Kahl, 1927) Foissner, 2016 (Ciliophora, Armophorea) with notes on its morphological and molecular characterization

The morphology, morphogenesis, and molecular phylogeny of Heterometopus palaeformis (Kahl, 1927) Foissner, 2016 were studied using microscopical observations on live and protargol-stained specimens as well SSU rRNA gene sequencing. The morphogenetic data for the genus are presented for the first time. Compared to other metopids, the morphogenesis of H. palaeformis is distinct since its (1) perizonal stripe rows 4 and 5 are involved in the formation of the opisthe’s adoral polykinetids; (2) perizonal stripe rows 3–5 and two adjacent preoral dome kineties contribute to most of the opisthe’s paroral membrane while perizonal stripe rows 1 and 2 contribute very little; (3) four kinety rows are formed to the left of the opisthe’s adoral zone of polykinetids. The Chinese population resembles the original and neotype populations well in terms of general morphology — characterized by a life size of 55–120 × 10–20 μm, an elongate ellipsoidal body with a hardly spiralized flat preoral dome, about 18 somatic kineties and 20 adoral polykinetids. The SSU rDNA sequence of the present population exhibits a disparity of 1.33%–2.22% divergence from sequences of other populations. Nevertheless, phylogenetic analysis reveals that populations of H. palaeformis form a separate, stable cluster within the paraphyletic Metopidae clade.

The molecular phylogeny of cirrate octopods (Cephalopoda: Octopoda: Cirrata) using COI and 16S sequences

Contrasting accounts of taxonomic relationships between finned octopod (Octopoda: Cirrata) taxa complicate species identification and generate nomenclatural instability. A comprehensive analysis based on both 16S and COI mitochondrial gene phylogenies is presented, using all currently accepted genera and approximately 27 putative species (including type species for all genera excepting Grimpoteuthis). The goal of this is to stabilise the concepts of genera and families and identify areas needing further systematic research. Four well supported clades are consistent with families Cirroteuthidae, Cirroctopodidae, Grimpoteuthididae, and Opisthoteuthidae across both 16S and COI phylogenies. Family Stauroteuthidae resolves as a sister clade to Cirroteuthidae in some analyses of the COI gene. Combined molecular and morphological similarities suggest that the Cirrata comprises two superfamily level clades, for which Cirroteuthoidea (for Cirroteuthidae and Stauroteuthidae) and Opisthoteuthoidea (for Cirroctopodidae, Grimpoteuthididae, and Opisthoteuthidae) are proposed. The paraphyletic Cirrothauma (Cirroteuthidae) contains at least three species, while within the Grimpoteuthididae, Cryptoteuthis and Luteuthis form clades within a paraphyletic Grimpoteuthis clade, indicating a need for further taxonomic assessment. Intra-clade structure within Opisthoteuthis is better resolved with COI than 16S data. At least one potentially undescribed Opisthoteuthis occurs in the northwestern Pacific, and northeastern Pacific specimens are tentatively referred to O. bruuni, representing a significant range expansion. Lastly, using the dates of fossil stem-Octobrachians and fossil cirrates for approximate calibration, a timetree estimated from COI gene data suggests that these cirrate families and most cirrate genera arose within the Late Cretaceous, possibly as part of the Mesozoic marine revolution, between 124−62 million years ago.

A New Species of Vampirolepis (Cestoda: Cyclophyllidea: Hymenolepididae) from the Bat Artibeus lituratus (Chiroptera: Phyllostomidae) in the Amazon Rainforest, Brazil

The Amazon biome has a great diversity of bat species. In the state of Acre, Brazil, there is an estimated occurrence of 64 bat species with the species of the genus Artibeus as one of the most abundant. Despite their abundance and widespread distribution within the biome, the helminth fauna from Amazonian bats is still poorly known. In this way, the objective of this study is to describe a new species of cestode from the genus Vampirolepis found in A. lituratus, collected at the Parque Estadual do Chandless, a natural preserved area, located in the Purus River Basin, Southwest Amazon, the state of Acre. The new species of Vampirolepis is distinguished from the others by the number and size of hooks, testes disposition, size of the cirrus sac, ovaries and internal and external seminal vesicles. Additionally, molecular study showed that this forms a paraphyletic clade with Vampirolepis elongatus.

Complete mitochondrial genome of Hydrolagus mitsukurii (Jordan & Snyder, 1904)

Holocephali has foreseeable value to help our understanding of vertebrate genome evolution due to its phylogenetic position. In this study, we reported a complete mitochondrial genome of Hydrolagus mitsukurii, a species of holocephalans. The mitochondrial genome is 20,486 bp in length and comprised 13 PCGs, 2 rRNA, 22 tRNA, and 1 control region (D-loop), as well as a long noncoding insertion between tRNAThr and tRNAPro. A phylogenetic tree based on 13 PCGs showed that Hydrolagus mitsukurii was grouped with the members of the family Chimaeridae. Furthermore, the phylogenetic tree further supported the paraphyletic clades of Hydrolagus and Chimera.

A New Assessment of Robust Capuchin Monkey (Sapajus) Evolutionary History Using Genome-Wide SNP Marker Data and a Bayesian Approach to Species Delimitation.

Robust capuchin monkeys, Sapajus genus, are among the most phenotypically diverse and widespread groups of primates in South America, with one of the most confusing and often shifting taxonomies. We used a ddRADseq approach to generate genome-wide SNP markers for 171 individuals from all putative extant species of Sapajus to access their evolutionary history. Using maximum likelihood, multispecies coalescent phylogenetic inference, and a Bayes Factor method to test for alternative hypotheses of species delimitation, we inferred the phylogenetic history of the Sapajus radiation, evaluating the number of discrete species supported. Our results support the recognition of three species from the Atlantic Forest south of the São Francisco River, with these species being the first splits in the robust capuchin radiation. Our results were congruent in recovering the Pantanal and Amazonian Sapajus as structured into three monophyletic clades, though new morphological assessments are necessary, as the Amazonian clades do not agree with previous morphology-based taxonomic distributions. Phylogenetic reconstructions for Sapajus occurring in the Cerrado, Caatinga, and northeastern Atlantic Forest were less congruent with morphology-based phylogenetic reconstructions, as the bearded capuchin was recovered as a paraphyletic clade, with samples from the Caatinga biome being either a monophyletic clade or nested with the blond capuchin monkey.

New species of Abyssocladia and two new cladorhizid genera (Porifera, Cladorhizidae) from New Zealand and Australia.

Seamounts on subantarctic New Zealand's Macquarie Ridge, including parts of Australia's Exclusive Economic Zone surrounding Macquarie Island, have been demonstrated to be a rich source of new species of carnivorous sponges (Demospongiae Sollas, Poecilosclerida Topsent, Cladorhizidae Dendy). Four new species of Abyssocladia Lévi, 1964, are described from Macquarie Ridge seamounts and at other disparate locations: Abyssocladia lanceola sp. nov. from Seamounts 7, 8, and 9 (Australia EEZ), Seamount 10 (International Waters), and the South Tasman Rise; Abyssocladia rowdeni sp. nov., first collected from diffuse hydrothermal vent sites at Brothers Seamount on the Southern Kermadec Ridge and recorded here from the non-venting seamounts on Chatham Rise to the east of the South Island of New Zealand; Abyssocladia tumulorum sp. nov., found exclusively on the Chatham Rise; and Abyssocladia sonnae sp. nov. from Monowai Seamount on the Tonga-Kermadec Ridge in International Waters, also found, surprisingly, on Macquarie Ridge's Seamount 8 (Australia EEZ). Patriciacladia gen. nov. has been established for a new species of Cladorhizidae discovered on Macquarie Ridge and Chatham Rise. Patriciacladia enigmatica gen. et sp. nov. is highly unusual in that it possesses palmate isochelae not typically found in Cladorhizidae and has a long branch in phylogenetic analysis of the family, supporting the establishment of a new genus and species for Abyssocladia n. sp. B (QM G339872, was NIWA 41033): 28S rDNA: LN870583, COI: LN870445, Macquarie Ridge) in Hestetun et al. (2016a: table 1; 2017: fig. 15). The discovery of two new species, again from the Macquarie Ridge and other New Zealand locations, expands support for the establishment of a new genus, Australocladia gen. nov., which contains several additional species nested as a monophyletic clade within the large, heterogenous, and paraphyletic Abyssocladia clade in molecular phylogenetic analyses. Australocladia sphaerichela gen. et sp. nov. and Au. alopecura gen. et sp. nov. both possess spherical abyssochelae, funnel-shaped expansions which may contain spermatophores on the body, substrongyles in the attachment base, and a generally southern hemisphere distribution.

Cytotaxonomy and Molecular Analyses of Mycteria americana (Ciconiidae: Ciconiiformes): Insights on Stork Phylogeny.

Although molecular information for the wood stork (Mycteria americana) has been well described, data concerning their karyotypical organization and phylogenetic relationships with other storks are still scarce. Thus, we aimed to analyze the chromosomal organization and diversification of M. americana, and provide evolutionary insights based on phylogenetic data of Ciconiidae. For this, we applied both classical and molecular cytogenetic techniques to define the pattern of distribution of heterochromatic blocks and their chromosomal homology with Gallus gallus (GGA). Maximum likelihood analyses and Bayesian inferences (680 bp COI and 1007 bp Cytb genes) were used to determine their phylogenetic relationship with other storks. The results confirmed 2n = 72, and the heterochromatin distribution pattern was restricted to centromeric regions of the chromosomes. FISH experiments identified fusion and fission events involving chromosomes homologous to GGA macrochromosome pairs, some of which were previously found in other species of Ciconiidae, possibly corresponding to synapomorphies for the group. Phylogenetic analyses resulted in a tree that recovered only Ciconinii as a monophyletic group, while Mycteriini and Leptoptlini tribes were configured as paraphyletic clades. In addition, the association between phylogenetic and cytogenetic data corroborates the hypothesis of a reduction in the diploid number throughout the evolution of Ciconiidae.

Mitochondrial cytochrome b indicates the presence of two paraphyletic diverged lineages of the blue sheep Pseudois nayaur across the Indian Himalaya: conservation implications.

Populations exhibit signatures of local adaptive traits due to spatial and environmental heterogeneity resulting in microevolution. The blue sheep is widely distributed across the high Asian mountains and are the snow leopard's principal prey species. These mountains differ in their evolutionary history due to differential glaciation and deglaciation periods, orography, and rainfall patterns, and such factors causes diversification in species. Therefore, we assess the phylogeographic status of blue sheep using the mitochondrial cytochrome b gene (220bp) across the Indian Himalayan region (IHR) and its relationship with other populations. Of the observed five haplotypes, two and three were from the western Himalayas (WH) and eastern Himalayas (EH) respectively. One of the haplotypes from WH was shared with the population of Pamir plateau, suggesting historical maternal connectivity between these areas. The phylogenetic analyses split the blue sheep into two paraphyletic clades, and western and eastern populations of IHR were within the Pamir and Tibetan plateau clades, respectively. We observed a relatively higher mean sequence divergence in the EH population than in the WH. We propose five 'Evolutionary Significant Units' across the blue sheep distribution range based on observed variation in the species' ecological requirements, orography, climatic conditions, and maternal lineages, viz.; Western Himalaya-Pamir plateau (WHPP); Eastern Himalaya-Tibetan plateau (EHTP); Qilian mountains; Helan mountains and Hengduan mountains population. Despite the small sample size, population divergence was observed across the IHR, therefore, we suggest a transboundary, collaborative study on comparative morphology, anatomy, ecology, behaviour, and population genetics using harmonized different genetic markers for identifying the overall taxonomic status of the blue sheep across its range for planning effective conservation strategies.

Integrated Taxonomy Revealed Genetic Differences in Morphologically Similar and Non-Sympatric Scoliodon macrorhynchos and S. laticaudus.

Simple SummaryIn this study, the species identities of similar-looking coastal spadenose sharks from different areas were clarified by adding new molecular markers and more individual body measurements, including animals from the Malaysian Peninsula that had not been examined previously. Collective evidence showed that there are two genetically distinct species that do not overlap in their spatial occurrence. The Malacca Strait acts as a boundary delineating the distribution range of the Pacific spadenose shark Scoliodon macrorhynchos to the east and, of the Northern Indian Ocean, S. laticaudus to the west. In addition, the need to determine the species status of Scoliodon animals from Indonesian waters was identified. The present study reinforced the need to rely on comprehensive genetic information in addition to external characteristics to assess the species identities and distribution range for small sharks and rays that have apparent contiguous coastal distribution with limited dispersal abilities.Previous examination of the mitochondrial NADH2 gene and morphological characteristics led to the resurrection of Scoliodon macrorhynchos as a second valid species in the genus, in addition to S. laticaudus. This study applied an integrated taxonomic approach to revisit the classification of the genus Scoliodon based on new materials from the Malaysian Peninsula, Malaysian Borneo and Eastern Bay of Bengal. Mitochondrial DNA data suggested the possibility of three species of Scoliodon in the Indo-West Pacific, while the nuclear DNA data showed partially concordant results with a monophyletic clade of S. macrorhynchos and paraphyletic clades of S. laticaudus and S. cf. laticaudus from the Malacca Strait. Morphological, meristic and dental characteristics overlapped between the three putative species. Collective molecular and morphological evidence suggested that the differences that exist among the non-sympatric species of Scoliodon are consistent with isolation by distance, and Scoliodon macrorhynchos remains as a valid species, while S. cf. laticaudus is assigned as S. laticaudus. The Malacca Strait acts as a spatial delineator in separating the Pacific S. macrorhynchos (including South China Sea) from the Northern Indian Ocean S. laticaudus. Future taxonomic work should focus on clarifying the taxonomic status of Scoliodon from the Indonesian waters.

Wild Boar (Sus scrofa) as Reservoir of Zoonotic Yeasts: Bioindicator of Environmental Quality.

Wildlife animals are recognized as reservoirs for zoonotic fungi and their faeces might play an important role in introducing pathogens into the environment. Thought wild boar (Sus scrofa) population has dramatically increased across Europe, information about their possible role in dissemination of zoonotic pathogenic yeasts in the environment is scant. Therefore, fecal samples (n = 124) from wild boars from Campania region (Southern Italy) were collected and yeasts identified biochemically and molecularly by sequencing of the internal transcribed spacer region and their phylogenetical relationship assessed. The antifungal susceptibility profiles of yeasts were also investigated using AFST-EUCAST method. Yeasts were isolated from 50.1% of the samples with the highest occurrence in samples from the province of Salerno (61.1%). A total of 368 Candida strains belonging to nine species were identified, with Candida albicans (45.7%), followed by Candida krusei (15.2%), Kazachstania slooffiae (9.8%) and Candida parapsilosis (7.6%) as the most prevalent identified species. Among C. albicans four sequence types (i.e., ST1-ST4) were identified with an intraspecific nucleotide difference up to 0.21%. The ML tree grouped all representative sequence types as paraphyletic clades with those of the references yeast species, respectively and supported by high bootstrap values. Fluconazole was the less active drug whereas, posaconazole, voriconazole, and isavuconazole the most active one. No resistance phenomena were observed for C. albicans and high MICs values for 5FC, azoles and echinocandines were registered in non-albicans Candida spp. This study showed, for the first time, the important role of wild boars in dissemination of pathogenic fungi in the environment. The absence of resistance phenomena in the Candida spp. might reflect environmental free from residues of azoles antifungals pollution or chemicals and suggests the role of wild boar as bio indicators of environment quality.

Anatomy and histology of the metapleural gland in the giant tropical ant Paraponera clavata (Fabricius, 1775) (Formicidae: Paraponerinae).

Ants are social insects with about 85 exocrine glands with different morphologies. The metapleural gland is exclusive to ants and its compounds have antimicrobial action, indicating a function in the defense against pathogens. Within ants, Paraponera clavata is the only living species representative of Paraponerinae. This study describes the anatomy and histology of the metapleural gland in workers of P. clavata. The metapleural gland is formed by secretory units that release secretion in a reservoir through collecting canaliculi. Secretory units are bicellular with a well-developed globular secretory cell, with 145 µm in diameter, and a duct cell forming the collecting canaliculi characterizing a class III gland. The metapleural gland is pointed out as a synapomorphy of ants. Paraponerinae constitutes one of the six subfamilies of the basal and paraphyletic Poneroide clade and knowledge of the metapleural gland morphology contribute to the understanding of evolutionary history of the basal ants' groups.

Molecular detection and characterization of the endosymbiont Wolbachia in the European hedgehog flea, Archaeopsylla erinacei.

Wolbachia, the endosymbiont of arthropods and onchocercid nematodes is present in many medically important insect species, being also considered for the indirect control of parasitic ones. Archaeopsylla erinacei is a flea species infesting hedgehogs acting as vector of Rickettsia felis, Bartonella henselae, and Rickettsia helvetica, thus having public health relevance. The Wolbachia surface protein (wsp) and 16S rRNA genes were used to determine the presence, prevalence and molecular typing of Wolbachia in this flea species collected in two regions of southern Italy. Of the 45 fleas tested (n=16 males, 35.6%; n=29 females, 64.4%), 43 (95.6%; 95% CI: 84.8-99.2) scored positive for Wolbachia, of which 15 (33.3%) and 28 (62.2%) were males and females, respectively. The sex-wise prevalence of this endosymbiont was almost equal in both sexes (males 93.8%; 95% CI: 69.5-99.7; females 96.7%; 95% CI: 83.1-99.8). Single locus sequence analysis (SLST) of Wolbachia revealed two sequence types for 16S rRNA gene, named as wAr_15227 and wAr_15234, which came from two different areas, equally distributed in male and female fleas, whilst only one sequence type was identified for wsp gene. The phylogenetic analysis placed the two 16S rRNA sequence types in paraphyletic clades belonging to the supergroup A and B, respectively. Whilst, the tree of wsp gene clustered the corresponding sequence in the same clade including those of Wolbachia supergroup A. In MLST analyses, both Wolbachia sequence types clustered in a monophyletic clade with Drosophila nikananu (wNik) and Drosophila sturtevanti (wStv) from supergroup A. ClonalFrame analysis revealed a recombination event in the wAr_15234 strain which came from Apulia region. Scientific knowledge of the presence/prevalence of Wolbachia among medically important fleas, may contribute to develop an alternative biological method for the vector control.

The identity and distribution of striped bagrid catfish, Mystus tengara (Hamilton 1822) revealed through integrative taxonomy.

The taxonomic status and geographical distribution of M. tengara are vague. No genetic diversity and phylogenetic study have been done till now to resolve its identity and distribution. In the present study, an integrated taxonomic approach has been applied to clarify the taxonomic status, identity, and distribution of bagrid catfish, Mystus tengara. Comparative morphometric evaluation of M. tengara identified in the present study from distant geographical locations revealed variations of the traits in response to body length and environment, without significant genetic distance. The observed morphometric traits of M. tengara were found to be overlapping with available morphometric traits of M. tengara, M. carcio and M. vittatus. Maximum likelihood and Bayesian phylogenetic analysis based on mitochondrial cytochrome c oxidase (COI) gene also could not resolve their identity, and five paraphyletic clades comprising of M. tengara, M. vittatus, and M. carcio from India, Nepal, and Bangladesh were observed. Morphological and genetic evidence along with comparative evaluation of M. tengara, from its type locality, we consider M. tengara identified in the present study to be true, with its distribution extending from North East India to West Bengal, North India, Central India, Northern peninsular India, and Bangladesh. The observation of paraphyletic subclades and evaluation of genetic distance between subclades reveals the presence offour cryptic species. Further confirmation on the identity of M. vittatus and M. carcio, by an integrated taxonomic approach based on fresh specimens collected from the type locality, is required.

Complete mitochondrial genome of the Japanese field vole microtus montebelli (Milne-Edwards, 1872) (Rodentia: Arvicolinae)

The complete mitochondrial DNA sequence of the Japanese field vole Microtus montebelli was determined using Illumina MiSeq platform. The assembled genome was 16,307 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes. According to phylogenetic analysis of 13 protein-coding genes, M. montebelli and other Microtus species consist of paraphyletic clades and M. montebelli is most closely related to M. kikuchii, a species endemic to Taiwan.

Complex histories of gene flow and a mitochondrial capture event in a nonsister pair of birds.

Hybridization, introgression, and reciprocal gene flow during speciation, specifically the generation of mitonuclear discordance, are increasingly observed as parts of the speciation process. Genomic approaches provide insight into where, when, and how adaptation operates during and after speciation and can measure historical and modern introgression. Whether adaptive or neutral in origin, hybridization can cause mitonuclear discordance by placing the mitochondrial genome of one species (or population) in the nuclear background of another species. The latter, introgressed species may eventually have its own mtDNA replaced or “captured” by other species across its entire geographical range. Intermediate stages in the capture process should be observable. Two nonsister species of Australasian monarch‐flycatchers, Spectacled Monarch (Symposiachrus trivirgatus) mostly of Australia and Indonesia and Spot‐winged Monarch (S. guttula) of New Guinea, present an opportunity to observe this process. We analysed thousands of single nucleotide polymorphisms (SNPs) derived from ultraconserved elements of all subspecies of both species. Mitochondrial DNA sequences of Australian populations of S. trivirgatus form two paraphyletic clades, one being sister to and presumably introgressed by S. guttula despite little nuclear signal of introgression. Population genetic analyses (e.g., tests for modern and historical gene flow and selection) support at least one historical gene flow event between S. guttula and Australian S. trivirgatus. We also uncovered introgression from the Maluku Islands subspecies of S. trivirgatus into an island population of S. guttula, resulting in apparent nuclear paraphyly. We find that neutral demographic processes, not adaptive introgression, are the most likely cause of these complex population histories. We suggest that a Pleistocene extinction of S. guttula from mainland Australia resulted from range expansion by S. trivirgatus.

Phylogeny and revision of the ‘Cubitermes complex’ termites (Termitidae: Cubitermitinae)

AbstractThe phylogeny of the genus Cubitermes Wasmann was reconstructed using two mitochondrial genes (COI and COII) and a fragment of the nuclear 28S rDNA, including samples of Apilitermes Holmgren, Crenetermes Silvestri, Megagnathotermes Silvestri and Thoracotermes Wasmann. Based on our analyses, we recovered these genera within a paraphyletic Cubitermes clade. Cubitermes species are distributed between five main clades, highly reflective of their enteric valve armatures (EVAs). Consequently, Cubitermes is here divided into five monophyletic genera based on phylogenetic analyses and EVAs: Cubitermes (sensu stricto), Isognathotermes Sjöstedt, Nitiditermes Emerson, Polyspathotermes Josens &amp; Deligne, gen.n., and Ternicubitermes Josens &amp; Deligne, gen.n. Moreover, the two species of Megagnathotermes included in this study, exhibiting different EVAs, are phylogenetically distant: M. katangensis Sjöstedt belongs in the genus Polyspathotermes, while M. notandus Silvestri remains as a monotypic genus. During the evolution of the Cubitermes complex, sclerotized EVA spatulae appeared twice independently: three or six spatulae in Polyspathotermes (sulcifrons and oblectatus patterns) and two jaw‐like spatulae in Nitiditermes (sankurensis pattern), which is absent in some species (oculatus pattern). Zoobank registration: http://zoobank.org/urn:lsid:zoobank.org:pub:576AAFF8‐63C6‐4962‐A8F5‐75C9317AEA7B.

DNA Barcoding and Diversity Analysis of 19 Economically Important Philippine Sea Cucumbers (Holothuroidea)

This study established the DNA barcodes of 19 economically important Philippine sea cucumbers belonging to Class Holothuroidea under Phylum Echinodermata using the cytochrome c oxidase I (COI) gene. These include sea cucumbers from the Family Holothuriidae under Order Aspidochirotida: Bohadschia marmorata, B. koellikeri, B. vitiensis, B. argus, Bohadschia sp. 1, Actinopyga echinites, A. lecanora, Holothuria scabra, H. fuscogilva, H. atra, H. impatiens, and H. albiventer; from the Family Stichopodiidae under Order Aspidochirotida: Stichopus horrens, S. monotuberculatus, S. vastus, S. hermanni, S. chloronotus, and Thelenota ananas; and from the Family Phyllophoriidae under Order Dendochirotida was Neocucumis proteus. Based on Kimura-2 pairwise (K2P) distances, low genetic variation within species of 0.005–0.018 was observed except for several species such as S. chloronotus, H. albiventer, A. echinites, and H. scabra – which had 0.057, 0.181, 0.207, and 0.215 within-species genetic variations, respectively. On the other hand, variation between species within a genus was 0.123 for Bohadschia, 0.18 for Actinopyga, 0.19 for Holothuria, and 0.071 for Stichopus. Phylogenetic tree using neighbor-joining analysis showed monophyletic clades for the genera Bohadschia, Actinopyga, Stichopus, Thelenota, and Neocucumis while paraphyletic clade was formed for the genus Holothuria. COI DNA sequences and barcodes were established for the first time for Neocucumis proteus and Holothuria albiventer.

Milesina thailandica, a second rust fungus on an early diverged leptosporangiate fern genus, Lygodium, found in Thailand

A new rust fungus was found on Lygodium flexuosum at Doi Suthep-Pui National Park in Chiang Mai Province, Thailand. Puccinia lygodii was the only rust fungus currently known on Lygodium spp. (Lygodioideae, Schizaeaceae, Schizaeales) from southern North America through northern South America. The new fungus produced uredinia linearly between veins, causing yellowish streaks, on the abaxial frond surface. The sori were covered with a layer of thin-walled fungal cells beneath the host epidermis and surrounded by thin-walled paraphyses. The sori did not have a distinct central aperture with ostiolar cells but ruptured irregularly to release urediniospores. Urediniospores were obovoid, obovoid-ellipsoid, or pyriform. The wall was thin, colorless, and completely echinulate. Neither amphispores nor teliospores were observed. The sorus and spore morphology indicated the taxonomic affinity of the fungus to the fern rust genera Hyalopsora and Milesina. A molecular phylogenetic analysis using nuclear large subunit ribosomal DNA sequence revealed that the Lygodium rust fungus was grouped in a paraphyletic Milesina clade. From the putative host preference, morphology, and estimated phylogenetic relationships, it was concluded that the fungus was a new species of Milesina.