Chickpea wilt, caused by a complex of soilborne fungi (Fusarium spp. Macrophomina phaseolina, Rhizoctonia solani, Sclerotium rolfsii, and Sclerotinia sclerotiorum), is the most important disease of chickpeas (Cicer arietinum) in Mexico. The aims of this study were to characterize Trichoderma isolates using a combination of phenotypic and molecular approaches and to evaluate their antagonistic activity against soilborne fungi associated with chickpea wilt. A total of 30 Trichoderma isolates were obtained from rhizospheric soil samples collected from chickpea fields in different locations of Sinaloa, Mexico. Dual confrontation assays showed the potential antagonistic effect of Trichoderma isolates against F. languescens, M. phaseolina, R. solani, S. rolfsii, and S. sclerotiorum. Five Trichoderma isolates (FAVF335, FAVF340, FAVF345, FAVF349, and FAVF351) exhibited mycelial growth inhibition of the five pathogens that ranged from 56 to 71%. These isolates were characterized using cultural, morphological, and molecular studies and tested in vivo for their ability to control soilborne pathogens in two chickpea cultivars (Blanco Sinaloa-92 and P2245) under greenhouse conditions. Phylogenetic analysis based on a combined ITS, EF-1α, and rpb2 sequence dataset identified T. afroharzianum (FAVF345, FAVF349, and FAVF351) and T. longibrachiatum (FAVF335 and FAVF340). Coating of chickpea seeds with T. longibrachiatum (FAVF335 and FAVF340) significantly reduced the disease severity and improved the plant growth-promoting attributes.