Sardinops Research Articles

Assessing the trophic interactions between two pelagic fishes in the northwestern Pacific based on stable isotopes

Scomber japonicus (S. japonicus) and Sardinops melanostictus (S. melanostictus) are widely distributed off the coast of Japan and in the northwestern Pacific. To investigate the trophic interactions between these two species, samples of S. japonicus and S. melanostictus were taken from the high seas of the northwestern Pacific Ocean (38°59′N–43°00′N, 150°30′E–161°48′E) from June to July 2021. We utilized stable isotope analysis to study the intraspecific and interspecific differences of them. For intraspecific variability, there was no significant difference in δ13C or δ15N values between females and males for either S. japonicus or S. melanostictus (P > 0.05). Significant differences in the δ13C and δ15N values of S. melanostictus were found among the body length groups (P < 0.01). The δ13C values of S. japonicus significantly differed among body length groups (P < 0.05). However, there was no significant difference in the δ15N values of S. japonicus (P > 0.05). For interspecific variability, there were significant differences in the δ13C and δ15N values between S. japonicus and S. melanostictus (P < 0.01). According to the GAM results, both the δ13C and δ15N values of S. japonicus gradually increased with body length, whereas both the δ13C and δ15N values of S. melanostictus tended to decrease and then increase. The niche overlap between S. japonicus and S. melanostictus decreased with increasing growth. Compared to those of S. melanostictus, the δ15N levels of S. japonicus were greater, while the niche width was smaller. The intraspecific niche overlap and width for both S. melanostictus and S. japonicus tended to increase and then decrease with growth. We suggest that the average trophic level of S. japonicus is greater than that of S. melanostictus. However, S. melanostictus has a greater diversity of prey items, and these two species coexist by reducing inter- and intraspecific competitive pressures through dietary differentiation.

Impact of anomalous ocean warming on the abundance and foraging habits of the California Sea Lion (Zalophus californianus) from the San Benito Archipelago in the Mexican Pacific

Abstract The California sea lion (Zalophus californianus; CSL) reflects environmental conditions of the Northeastern Pacific, where resource availability was importantly reduced for different taxa during climatic variations such as the North Pacific heatwave (The Blob 2014 to 2015) or El Niño 2015 to 2016 due to the effect of these anomalies on primary productivity. Our objective was to determine the abundance and foraging habits of CSLs from the San Benito Archipelago (Mexican Pacific) in a period (2013 to 2019) that involved warm anomalies. Annual counts were conducted by sex/age classes; scats were sampled to identify the main prey consumed; and pup fur (maternal foraging indicators) was collected for analysis of δ13C and δ15N. The prey importance index (PII) and trophic level were calculated and the Siber assessment in R was used to estimate isotopic niches. Colony abundance decreased by approximately 50% from 2013 to 2019. Values of δ13C showed significant interannual differences (P &amp;lt; 0.001) with more negative values (−17.2‰ to −16.7‰) from 2015 onwards, indicating offshore foraging habits. Significant interannual differences (P &amp;lt; 0.001) were found for δ15N, with a declining trend (20.4‰ to 19.07‰), and a difference of more than 1‰ between 2013 and 2019, evidencing a probable shift of foraging grounds toward higher latitudes. Based on the PII, Strongylura exilis (30%), Merluccius productus (24%), Ommastrephes bartramii (10%), and Sardinops sagax (10%) were the most important prey, showing significant interannual differences (P &amp;lt; 0.001). CSLs had a mean trophic level of 4.89, with a slight increasing trend toward the end of the period. Dietary plasticity was found in CSLs, possibly caused by environmental changes that modified prey availability and led to variations in foraging grounds, and consequently in the colony abundance over time.

Unveiling Ecosystem Shifts in the Southern Benguela Through Otolith Biochronologies of Sardine (Sardinops sagax)

ABSTRACTSardine (Sardinops sagax) in the southern Benguela has shown substantial changes in population size over the past 70 years. Heavy fishing pressure in the 1950s to early 1970s caused the collapse of sardine stocks in South Africa. A fishery collapse happens because of significant alterations in the marine community, hindering the recovery of valuable commercial species and leading to cascading effects across multiple trophic levels in marine food webs. In this study, a robust 58‐year biochronology (1962–2019) was developed using archived sardine otoliths from the West of Cape Agulhas in South Africa. Sequential t‐test analysis of regime shifts (STARS) performed on the biochronology of fish growth indicated four regimes with three alteration points in 1986, 2006 and 2015 that correspond with periods of low, high, average and low biomass, respectively; that is, high growth rates occurred during the high biomass period and vice versa. A series of mixed effects models was developed to determine increment width response to selected environmental, prey availability and sardine biomass factors based on the assumption that otolith increment growth is a proxy for somatic growth. Predicted sardine growth positively correlated with sardine biomass, sea surface temperature and copepod abundance estimates. This observation suggests that sardine population dynamics exhibit a depensation mechanism, potentially destabilizing populations after the fishery collapse. Sea surface temperature and copepod abundance have been primary factors influencing sardine growth, partly because of depensatory population dynamics. Furthermore, the study improves understanding of how different factors have affected sardine growth following the collapse of the sardine fishery.

Crossing the Pacific: Genomics Reveals the Presence of Japanese Sardine (Sardinops melanosticta) in the California Current Large Marine Ecosystem.

Recent increases in frequency and intensity of warm water anomalies and marine heatwaves have led to shifts in species ranges and assemblages. Genomic tools can be instrumental in detecting such shifts. In the early stages of a project assessing population genetic structure in Pacific Sardine (Sardinops sagax), we detected the presence of Japanese Sardine (Sardinops melanosticta) along the west coast of North America for the first time. We assembled a high quality, chromosome-scale reference genome of the Pacific Sardine and generated low coverage, whole genome sequence (lcWGS) data for 345 sardine collected in the California Current Large Marine Ecosystem (CCLME) in 2021 and 2022. Fifty individuals sampled in 2022 were identified as Japanese Sardine based on strong differentiation observed in lcWGS SNP and full mitogenome data. Although we detected a single case of mitochondrial introgression, we did not observe evidence for recent hybridization events. These findings change our understanding of Sardinops spp. distribution and dispersal in the Pacific and highlight the importance of long-term monitoring programs.

Advances in understanding physical and biological controls on eggs and larval distribution in Pacific fisheries: A review

The early stages of fish, comprising eggs and larvae, are exceptionally fragile and sensitive to environmental dynamics and climate change. Pacific Ocean (PO) currents play an important role in shaping the distribution of marine organisms, influencing global climate patterns, heat distribution, coastal temperatures, and nutrient redistribution. These currents reveal significant changes within the climate system. Their variability across different timescales can be attributed to the complex interplay of physical forces. These currents are subjected to diverse anthropogenic factors, exerting detrimental effects on the dispersal of fish larvae. Furthermore, climate change variables, including alterations in tropical PO temperature associated with the ENSO cycle, Atlantic Nino modes influencing equatorial Atlantic temperature, changes in ocean salinity, polar ice cap melting, increasing greenhouse gases, marine heatwaves, and fluctuations in subsurface flows, directly impact the distribution, abundance, and species composition of early life stages. Major Pacific fisheries, such as those targeting Pacific sardines, saury, and anchovies, undergo population booms and declines due to significant alterations in the current dynamics of currents and fronts within the PO. The anticipated intensification of the ENSO cycle, characterized by more frequent and severe El Niño (warm) and La Niña (cold) events as a result of climate change, is expected to significantly impact the early developmental stages of important commercial fish stocks regularly. This review synthesizes the current understanding of the physical and biological parameters driving changes in ocean currents and their implications for early fish dispersion, emphasizing the critical need for research in this area to inform global conservation efforts, fisheries management, and food security.

Fisheries shocks provide an opportunity to reveal multiple recruitment sources of sardine in the Sea of Japan

The abrupt decline in sardine catches in the Sea of Japan and the East China Sea (SJ-ECS) in 2014 and 2019 and the recovery in the following years call into question the current assumption that sardines in the SJ-ECS form a self-recruiting subpopulation. To test this hypothesis, we analysed otolith stable oxygen and carbon isotope profiles (δ18O, δ13C) of age-0 and age-1 sardines from 2010 and 2013–2015 year-classes captured in the SJ-ECS, as geographic markers for nursery areas. Age-0 sardines generally showed a significant ontogenetic decrease in otolith δ18O from larval to juvenile stages. However, the majority of age-1 captured in spring 2011, 2015 and 2016 showed non-decreasing otolith δ18O profiles, suggesting that the age-0 off the Japanese coast were not the main source of recruitment. Different migration groups were thus indicated: the “locals” growing up off the Japanese coast and the migrating “nonlocals”. The isotope profiles of the “nonlocals” overlapped with those of age-0 captured in the subarctic North Pacific, suggesting that they may be migrants from the Pacific, or perhaps an unobserved northward migration group in the SJ-ECS. Our results highlight the considerable uncertainty in the population structure assumed in current stock assessment models for Japanese sardine.

Characterization of Incremental Markings in the Sagittal Otolith of the Pacific Sardine (Sardinops sagax) Using Different Imaging Modalities

Characterization of Incremental Markings in the Sagittal Otolith of the Pacific Sardine (Sardinops sagax) Using Different Imaging Modalities

Ichthyocenosis of the upper epipelagic layer in the Pacific waters of Russia during japanese sar-dine «renaissance» in the beginning of the 21&lt;sup&gt;st&lt;/sup&gt; century

Dynamics of integral parameters for the species structure in ichthyocenosis of the upper epipelagic layer in the Pacific waters off the Kuril Islands in 2019–2023 is discussed in compare with previously published data since 2004 in context of a new bloom of japanese sardine Sardinops melanostictus. Results of trawl surveys are clustered using the method of multi-dimensional scaling. Species composition in the trawl catches in 2004–2013, before the time of mass expansion of subtropi-cal migrants, as japanese sardine and chub mackerel Scomber japonicus, was distinguished by domina-tion of mesopelagic fishes of families Myctophidae and Microstomatidae and pink salmon Oncorhynchus gorbuscha. From 2014 to the present, the dominant positions in the ichthyocenosis were held by japanese sardine and chub mackerel, with a decreasing role of the latter. In the last pentade (2019–2023), the species structure of pelagic ichthyocenosis in the Pacific waters of Russia has not undergone fundamental changes. At the same time, the tendency has increased for uneven distribution of biomass between the species of fish community in favor of japanese sardine. The polydominance index decreased significantly (P &lt; 0.05, t-test 4.33) from 4.85 ± 0.44 in 2004–2013 to 2.37 ± 0.21 in 2019–2022, and the index of evenness of species structure decreased from 0.41 ± 0.04 to 0.15 ± 0.02 (P &lt; 0.05, t-criterion 5.25). Growth of domestic and foreign catches of japanese sardine in the second decade of the 21 century is a sign of this species bloom beginning.

Migration patterns of the Japanese sardine in the Sea of Japan by combining the microscale stable isotope analysis of otoliths and an ocean data assimilation model

The Japanese sardine (Sardinops sagax melanostictus) is a small pelagic fish found in the Sea of Japan, the marginal sea of the western North Pacific. It is an important species for regional fisheries, but their dispersal and migration patterns during early life stages remain unclear. In this study, we analyzed the stable oxygen isotope ratios of otoliths of young-of-the-year (age 0) Japanese sardines collected from the northern offshore and southern coastal areas of the Sea of Japan in 2015 and 2016. The ontogenetic shifts of the geographic distribution were estimated by comparing the profiles of life-long isotope ratios and temporally varying isoscape, which was calculated using the temperature and salinity fields produced by an ocean data assimilation model. Individuals that were collected in the northern and southern areas hatched and stayed in the southern areas (west offshore of Kyushu) until late June, and thereafter, they can be distinguished into two groups: one that migrated northward at shallow layer and one that stayed around the southern area in the deep layer. A comparison of somatic growth trajectories of the two groups, which was reconstructed based on otolith microstructure analysis, suggested that individuals that migrated northward had significantly larger body lengths in late June than those that stayed in the southern area. These results indicate that young-of-the-year Japanese sardines that hatched in the southern area may have been forced to choose one of two strategies to avoid extremely high water temperatures within seasonal and geographical limits. These include migrating northward or moving to deeper layers. Our results indicate that the environmental variabilities in the southern area could critically impact sardine population dynamics in the Sea of Japan.

Coding Optimization for an Ecological non-linear Age-structured Fish Population Model with a Shepherd Recruitment Function

The study of the optimally density-regulated recruitment plays a crucial role in the overall management and determining of fishing efforts of marine fish populations. This paper will develop a Matlab code can determine what an optimal recruitment density regulation strategy would be for the un-fished population and what it changes to when fishing efforts are applied. This code can determine threshold values used to avoid fisheries from collapsing. The code will be applied to the Gulf of California Pacific sardine (Sardinops caeruleus) population. An age structured design with a Shepherd density regulating stock-recruitment function is used in this study. In this work, the parameter which is varied is captured in the Shepherd recruitment function and is associated with behavioral interventions such as selecting different drift routes and clumping on resources that will increase egg-larvae survival to the recruitment stage. A detailed background study of other models is explored, then a derivation of the Shepherd recruitment model is developed from the traditional discrete model. A special MATLAB code is then developed to illustrate the pair-wise invasive plots for the model structures. The code is for theoretical analysis of fish population models.

Computing bias and variance for Pacific sardine (Sardinops sagax) biomass estimated from aerial surveys in California nearshore waters

Pacific sardine (Sardinops sagax) stocks off the U.S. Pacific coast undergo boom and bust cycles modulated by decadal changes in oceanic and atmospheric conditions. During periods of low abundance, Pacific sardine may contract into nearshore waters, making it more challenging to be surveyed by research vessels that cannot operate in the shallowest habitats, 0 to 40.00 m. In response, a new transect-based design and methods were developed to compute bias and variance of biomass estimated from a collaborative aerial survey implemented in nearshore waters. From experimental aerial surveys conducted in 2010 and from 2018 to 2020, two professional aerial fish spotters underestimated school biomass by 10.5% and 12.6%, whereas most of the variability of aerial biomass was due to within-transect variance, with no significant contribution from the among-transect variance. Implementation of the new transect-based design to aerial surveys from 2020 to 2023 in southern and northern California showed that a substantial biomass of Pacific sardine occurred in nearshore waters, representing 69.9% of total biomass estimated from acoustic surveys in spring 2021, and 36.5% in summer 2021. Seasonal biomass estimates were variable within each region, affected by school dynamics during daytime in nearshore waters and the timing of aerial surveys as determined by weather and environmental conditions. Given that nearshore aerial biomass comprised a measurable proportion of total biomass estimates for Pacific sardine during the recent period of low abundance, it has been used to inform acoustic survey catchability, which is no longer assumed to be 1.0 in recent Pacific sardine stock assessments.

Organismal responses to deteriorating water quality during the historic 2020 red tide off Southern California

In April and May of 2020, a large phytoplankton bloom composed primarily of the dinoflagellate Lingulodinium polyedra reached historic levels in geographic expanse, duration, and density along the coast of southern California, United States, and Baja California Norte, Mexico. Here, we report the water quality parameters of dissolved oxygen and pH over the course of the red tide, as measured by multiple sensors deployed in various locations along San Diego County, and document the extent of mass organism mortality using field surveys and community science observations. We found that dissolved oxygen and pH corresponded with bloom dynamics, with extreme hypoxic and hyperoxic conditions occurring at multiple locations along the coast, most notably within select estuaries where dissolved oxygen reached 0 mg L−1 and hypoxia occurred for up to 254 consecutive hours, as well as along the inner shelf of the open coast where dissolved oxygen dropped as low as 0.05 mg L−1. Similarly, pH ranged widely (6.90–8.79) across the bloom over both space and time, largely corresponding with dissolved oxygen level. Extreme changes in dissolved oxygen and pH, in addition to changes to other water parameters that affect organismal health, ultimately led to documented mortalities of thousands of demersal and benthic fishes and invertebrates (primarily within estuarine and inner-shelf environments), and long-term surveys within one lagoon showed protracted changes to benthic infaunal density and species composition. In addition to field observations, we also quantified water quality parameters and organism mortalities from four local aquarium facilities, with varying levels of filtration and artificial oxygenation, and documented the morphological changes in the gills of captive-held Pacific sardine in response to the red tide. We show that multiple factors contributed to organismal stress, with hypoxia likely being the most widespread, but not the only, cause of mortality.

Use of the raw material base of marine fish in Russian waters of the Far Eastern seas and adjacent areas of the open part of the Pacific Ocean in 2000–2020

The purpose of the work: characteristics of the raw material base of marine fish in the Far Eastern fishery basin and an assessment of the effectiveness of its use by domestic fisheries at the present stage (2000–2020).Methods used: to achieve this goal, data on biomass, catch and development of the main commercial marine fish were analyzed. Fish catches were reviewed based on operational information about the fishery based on daily ship reports from the industry monitoring system.Novelty: elements of novelty are generalized modern materials on biomass, catch and development of marine fish resources in the Far Eastern seas and adjacent waters of the Pacific Ocean. The current state of commercial fish stocks (walleye pollock, Pacific cod, saffron cod, Pacific herring, Righteye flounders, greenlings, Japanese pilchard, Chub mackerel, Pacific saury) in the Far Eastern fishing basin can be characterized as stable, and the distribution of the catch of these objects among individual fishing areas due to their significant volumes is practically determines the distribution of catch of both quota and non-quota species of marine fish. Scientific information support for the above-m entioned fish is at a high level, their biological condition is generally favorable, and the dynamics of their numbers is regulated mainly by habitat variability.Practical significance: the results of this study can be used in forecasting the dynamics of aquatic biological resources, and the results obtained on marine fish stocks and fisheries will improve the efficiency of using their raw material base.

Essential and Non-Essential Elemental Composition and Health Risks in Pacific Sardine in the Northwest Pacific Ocean

Pacific sardine (Sardinops sagax) in the northwest Pacific Ocean (NPO) not only preserve the equilibrium of the NPO food chain, but also serve as a source of nutrition for humans. In order to evaluate the levels of various elements in S. sagax, we collected specimens from NWP waters and ascertained the quantities of four macronutrients, nine essential trace elements, and twelve non-essential trace elements. The factors (fatness, sex, sexual maturity, body length, body weight, and age) influencing the concentration were investigated, and the correlations of trace elements were examined. Additionally, the Estimated Daily Intake (EDI) approach and the Target Hazard Quotient (THQ) methodology were used to assess contamination levels and associated consumption risks. The results revealed that the macronutrient content (54–10,500 mg kg−1) was higher than the necessary trace elements (0–488 mg kg−1) and the non-essential trace elements (0–448 mg kg−1), and most of the elements showed positive correlation with each other. Almost all of the element concentrations were below the maximum permitted levels (MPLs) recommended by the FAO/WHO, except for As and Cd. The factors, including fatness, sexual maturity, body length, body weight, and age, showed a negative correlation with most of the trace elements. The outcomes of the stepwise regression analysis showed that sex and stage of sexual maturation were the principal biological factors influencing elemental content. The risk assessment and standard dietary intake levels indicated that the potential health issues associated with the consumption of S. sagax were negligible.

Fish weight reduction in response to intra‐ and interspecies competition under climate change

AbstractAs described by the temperature–size rule paradigm, fish living in warmer temperatures grow faster but have a smaller mature body size. However, the changes in the body size of fish communities in the western North Pacific, which is one of the most active fishing grounds, remain unclear. This study aimed to investigate changes in the body size of fish assemblages in the western North Pacific and whether fish sizes were potentially driven by the temperature–size rule, bottom‐up effects and intra‐ and interspecies competition at a community scale. We evaluated the fish weight data of 6 stocks of 4 species from 1978 to 2018 and 17 stocks of 13 species from 1995/1997 to 2018. Weight reduction in the fish assemblage was observed in the 1980s and was associated with the biomass peak of the Japanese sardine (Sardinops melanostictus), indicating the effect of intra‐ and interspecies competition. Another weight reduction was observed in the 2010s, which was associated with a moderate increase in the biomass of the Japanese sardine and chub mackerel (Scomber japonicus). Our analyses indicate that stronger stratifications in the surface layers during the 2010s potentially reduced the nutrient supply from the subsurface to the surface layers. This limitation in food availability forced intra‐ and interspecies competition under a moderate increase in fish biomass. Our findings underscore the critical significance of integrating the impacts of species competition and climate change on fish sizes to improve fishery management at a community level.

Occurrence of larval fishes sampled by drifting light traps in the lower reaches of a South African estuary.

The tidal occurrence of larval fishes was investigated in the permanently open Kowie Estuary on the warm-temperate coast of South Africa. Larval fishes were sampled in the mouth region using two drifting light traps deployed on the ebb and flood tides every second night for two consecutive 14-day periods, coinciding with the dark moon phase. A total of 553 larval fishes were caught, representing nine families and 26 species, of which Blenniidae and Clupeidae dominated. The prevalence of different estuarine association fish guilds was also tide-specific. Marine and estuarine species, such as Omobranchus woodi, were more dominant during flood tides, while marine straggler species, such as Sardinops sagax, which are not dependent on estuaries, were dominant on the ebb tide. Marine estuarine-dependents were only present during flood tides, potentially indicating ingress and entrainment within the estuary. The results confirm that light trap catches yield a different composition of species compared to towed ichthyoplankton net studies. Additionally, drifting light traps allow for better targeting of species with a phototactic response and reduction of incidental catch. Consequently, a mixture of gear is encouraged for more comprehensive surveys of larval fish occurrence.

Rapid color change in a group-hunting pelagic predator attacking schooling prey

A major challenge for group-hunting predators is coordinating movement at high speed. Billfish - large predators with an elongated rostrum (bill) - include some of the fastest animals in the ocean and often form groups when hunting. This presents a challenge: how do fast-moving predators wielding dangerous weaponry reliably coordinate their attacks to avoid injury? We report a possible solution to this problem through rapid colour change in group-hunting striped marlin (Kajikia audax) as they hunt schools of Pacific sardines (Sardinops sagax). By analysing high-resolution drone footage of marlin attacks, we found that individual marlin intensified the contrast of their body stripes immediately prior to striking prey schools, before rapidly decreasing intensity after their attack. This suggests that color change may be a reliable signal of motivation to attack, potentially deterring conspecifics from attacking.

Anchovy (Engraulis ringens) and Pacific sardine (Sardinops sagax) variability changes in northern Chile associated with the environment and inter species synchronicity: GARCH model with exogenous variable and hybrid Bayesian deep learning estimation approach

Small pelagic fish species, such as anchovy (Engraulis ringens) and Pacific sardine (Sardinops sagax), play a crucial role in marine ecosystems worldwide as they serve as an important food source for higher-order predators, such as seabirds, marine mammals, and larger fish species; also from their high productivity in terms of fishery landings, they help with maintaining food security. However, small pelagic populations are known for their variability, with fluctuations in their distribution and abundance influenced by interactions with environmental and human-related factors in different spatio-temporal scales. This study aims to investigate the variability in anchovy and sardine populations in northern Chile and their potential environmental drivers by using a class of models that address the changes in variability (i.e. variance) over time, namely Generalized autoregressive conditional heteroskedasticity (GARCH) models. In particular, this work considers a GARCH model that includes an additional term in the variance, that could help to better model the variability fluctuations of both anchovy and sardine, explained by environmental factors. Since there is no estimation procedures for those type of models, we propose a hybrid Approximate Bayesian Computation (ABC) procedure that involves the use of Deep Learning structures for estimating the parameters of the model and obtain posterior distributions. The results are two-fold: First, the proposal of a new time series model that better explain conditional variance with exogenous variables and a novel estimation procedure, and second, a novel approach for establishing explicit models that address the variability of small pelagic fisheries and their interaction with the environment.

Long-term comparison between the Japanese sardine (Sardinops melanostictus) stock level and simulated zooplankton density around the Kuroshio region

Long-term comparison between the Japanese sardine (Sardinops melanostictus) stock level and simulated zooplankton density around the Kuroshio region

Evaluation of the Precision of Age Determination and Variability in Growth for Japanese Sardine (&lt;i&gt;Sardinops melanostictus&lt;/i&gt;), Tsushima Warm Current Subpopulation

Evaluation of the Precision of Age Determination and Variability in Growth for Japanese Sardine (&lt;i&gt;Sardinops melanostictus&lt;/i&gt;), Tsushima Warm Current Subpopulation