12-phase rectifier generators have been widely used in ship power systems, since they can provide high quality DC voltage. In view of the safety and reliability requirements of power supply during ship navigation, the DC side grounding faults of two paralleled 12-phase rectifier generators are studied through theoretical analysis and simulation analysis. First of all, the DC voltage expression of the 12-phase rectifier generator under normal condition is derived. Secondly, the zero sequence circuits of the DC side grounding fault are studied, the DC voltage is calculated by the phasor method, the DC output current of generator is analyzed by the zero sequence circuits. Finally, the correctness of the analysis method is verified by the simulation model.