In WiFi-based crowdsourced fingerprinting indoor positioning systems (IPS), the signal space of WiFi APs changes over time. To autonomously maintain a highly reliable localization accuracy, the fingerprint database needs regular maintenance and updates. However, this process is labor-intensive and time-consuming due to the appearance of faulty access points (APs) in crowdsourced samples received from target clients, which are mainly used for autonomous maintenance and updates. Additionally, if some APs are relocated, removed, or replaced in the indoor environment after fingerprint map construction, it can severely impact IPS accuracy. In this paper, we present Dynamic Online Fingerprint Learning with Altered APs status-aware and updating (DOFLAAU) for IPS. Our systematic methodology involves several key steps. First, we employ the Modified Group Method of Data Handling (GMDH) neural network regression for autonomous AP status monitoring and alteration detection. Next, we perform autonomous APs subset sample selection using a modified Thomson model, followed by outlier feature detection and removal based on the weighted sample density rate. Thirdly, we propose a dynamic online fingerprint map updating model using the cosine similarity distance metric. Lastly, we adopted an effective signal distance-based weighted k-nearest neighbor algorithm to improve IPS accuracy. The experiment results validate the efficiency and effectiveness of our proposed algorithms in terms of better localization accuracy compared to peer algorithms.