Outer Volume Saturation Research Articles

Joint Design of RF and Gradient Waveforms via Auto-differentiation for 3D Tailored Excitation in MRI.

This paper proposes a new method for joint design of radiofrequency (RF) and gradient waveforms in Magnetic Resonance Imaging (MRI), and applies it to the design of 3D spatially tailored saturation and inversion pulses. The joint design of both waveforms is characterized by the ODE Bloch equations, to which there is no known direct solution. Existing approaches therefore typically rely on simplified problem formulations based on, e.g., the small-tip approximation or constraining the gradient waveforms to particular shapes, and often apply only to specific objective functions for a narrow set of design goals (e.g., ignoring hardware constraints). This paper develops and exploits an auto-differentiable Bloch simulator to directly compute Jacobians of the (Bloch-simulated) excitation pattern with respect to RF and gradient waveforms. This approach is compatible with arbitrary sub-differentiable loss functions, and optimizes the RF and gradients directly without restricting the waveform shapes. For computational efficiency, we derive and implement explicit Bloch simulator Jacobians (approximately halving computation time and memory usage). To enforce hardware limits (peak RF, gradient, and slew rate), we use a change of variables that makes the 3D pulse design problem effectively unconstrained; we then optimize the resulting problem directly using the proposed auto-differentiation framework. We demonstrate our approach with two kinds of 3D excitation pulses that cannot be easily designed with conventional approaches: Outer-volume saturation (90° flip angle), and inner-volume inversion.

Perfusion of the placenta assessed using arterial spin labeling and ferumoxytol dynamic contrast enhanced magnetic resonance imaging in the rhesus macaque.

To investigate the correspondence between arterial spin labeling (ASL) flow-sensitive alternating inversion recovery (FAIR) and ferumoxytol DCE MRI for the assessment of placental intervillous perfusion. Ten pregnant macaques in late second trimester were imaged at 3 T using a 2D ASL FAIR, with and without outer-volume saturation pulses used to control the bolus width, and a 3D ferumoxytol DCE-MRI acquisition. The ASL tagged/control pairs were averaged, subtracted, and normalized to create perfusion ratio maps. Contrast arrival time and uptake slope were estimated by fitting the DCE data to a sigmoid function. Macaques (N = 4) received interleukin-1β to induce inflammation and disrupt perfusion. The FAIR tag modification with outer-volume saturation reduced the median ASL ratio percentage compared with conventional FAIR (0.64% ± 1.42% versus 0.71% ± 2.00%; P < .05). Extended ferumoxytol arrival times (34 ± 25 seconds) were observed across the placenta. No significant DCE signal change was measured in fetal tissue ( 0.6% ± 3.0%; P = .52) or amniotic fluid (1.9% ± 8.8%; P = .59). High ASL ratio was significantly correlated with early arrival time and high uptake slope (P < .05), but ASL signal was not above noise in late-DCE-enhancing regions. No significant differences were observed in perfusion measurements between the interleukin-1β and controls (P > .05). The ASL-FAIR and ferumoxytol DCE-MRI methods are feasible to detect early blood delivery to the macaque placenta. Outer volume saturation reduced the high macrovascular ASL signal. Interleukin-1β exposure did not alter placental intervillous perfusion. An endogenous-labeling perfusion technique is limited due to extended transit times for flow within the placenta beyond the immediate vicinity of the maternal spiral arteries.

Reduction of lipid contamination in MR spectroscopy imaging using signal space projection.

Lipid contamination can complicate the metabolite quantification in MR spectroscopic imaging (MRSI). In addition to various experimental methods demonstrated to be feasible for lipid suppression, the postprocessing method is beneficial in the flexibility of applications. In this study, the signal space projection (SSP) algorithm is proposed to suppress the lipid signal in the MRSI. The performance of lipid suppression using SSP and SSP combined with the Papoulis-Gerchberg (PG) algorithm (PG+SSP) is examined in 2D MRSI data and the results were compared with outer volume saturation (OVS) methods. Up to 10 lipid spatial components were extracted by SSP from lipid signals in the range of 0.8~1.5 ppm. Our results show that most lipid signals were found in the first 4 to 5 components and that lipid signals on the spectra can be suppressed using 4 to 5 components. Metabolites concentrations were quantified using LCModel. Two regions of interest (ROIs) were manually selected on the peripheral and inner brain regions. The quantification of metabolites in terms of fitting reliability (CRLB) and spatial variations within ROIs (SpaVar) is improved using SSP. When 5 to 6 components were used in SSP and PG+SSP, the metabolite concentrations and the associated SpaVar and CRLB are at the same level as those from the OVS. We have demonstrated that the SSP method can be used to suppress the lipid signals of MRSI and SSP with 5 to 6 components is suggested to have a similar suppression performance as the OVS method.

Suppression of radiation damping for high precision quantitative NMR

True quantitative analysis of concentrated samples by 1H NMR is made very difficult by Radiation Damping. A novel NMR sequence (inspired by the WET NMR sequence and by Outer Volume Saturation methods) is therefore proposed to suppress this phenomenon by reducing the spatial area and consequently the number of spins contributing to the signal detected. The size of the detected volume can be easily chosen in a large range and line shape distortions are avoided thanks to a uniform signal suppression of the outer volume. Composition of a mixture can as a result be determined with very high accuracy (precision and trueness) at the per mille level whatever the concentrations and without hardware modification.

Effects of Contrast Agent and Outer Volume Saturation Bands on Water Suppression and Shimming of Hepatic Single-Volume Proton MR Spectroscopy at 3.0T

Purpose. To determine whether administration of gadolinium diethylenetriamine pentaacetic acid (Gd-DTPA) and whether placement of the outer volume saturation bands significantly affect shimming and water suppression on hepatic MR spectroscopic prescanning. Method. Region of interest (ROI) of 2 cm × 2 cm × 2 cm was carefully positioned in the region of the middle portion of the right hepatic lobe. 32 patients were examined before and after administration of Gd-DTPA with and without outer-volume saturation bands. Linewidths (Full-Width Half-Maximum (FWHM)) and water suppression were obtained. A paired t-test for comparison of means was used. Results. (1) The group with the outer volume saturation bands demonstrated slightly better water suppression effect than the group without outer volume saturation bands before administration. (2) The group with the outer volume saturation bands demonstrated better water suppression effect than the group without outer volume saturation bands after administration. (3) Both shimming and water suppression effectswere decreased on enhanced MR spectroscopic prescanning (all P < 0.05). Conclusions. Placement of the outer volume saturation bands is helpful to improve water suppression both before and after contrast agent administration. Gd-DTPA exerts a slightly adverse effect (a statistically significant but clinically unimportant) on magnetic resonance spectroscopic prescanning at 3T.

Multiecho coarse voxel acquisition for neurofeedback fMRI

"Real-time" functional magnetic resonance imaging is starting to be used in neurofeedback applications, enabling individuals to regulate their brain activity for therapeutic purposes. These applications use two-dimensional multislice echo planar or spiral readouts to image the entire brain volume, often with a much smaller region of interest within the brain monitored for feedback purposes. Given that such brain activity should be sampled rapidly, it is worthwhile considering alternative functional magnetic resonance imaging pulse sequences that trade spatial resolution for temporal resolution. We developed a prototype sequence localizing a column of magnetization by outer volume saturation, from which densely sampled transverse relaxation time decays are obtained at coarse voxel locations using an asymmetric gradient echo train. For 5×20×20 mm3 voxels, 256 echoes are sampled at ∼1 msec and then combined in weighted summation to increase functional magnetic resonance imaging signal contrast. This multiecho coarse voxel pulse sequence is shown experimentally at 1.5 T to provide the same signal contrast to noise ratio as obtained by spiral imaging for a primary motor cortex region of interest, but with potential for enhanced temporal resolution. A neurofeedback experiment also illustrates measurement and calculation of functional magnetic resonance imaging signals within 1 sec, emphasizing the future potential of the approach.

Automatic placement of outer volume suppression slices in MR spectroscopic imaging of the human brain

Spatial suppression of peripheral regions (outer volume suppression) is used in MR spectroscopic imaging to reduce contamination from strong lipid and water signals. The manual placement of outer volume suppression slices requires significant operator interaction, which is time consuming and introduces variability in volume coverage. Placing a large number of outer volume saturation bands for volumetric MR spectroscopic imaging studies is particularly challenging and time consuming and becomes unmanageable as the number of suppression bands increases. In this study, a method is presented that automatically segments a high-resolution MR image in order to identify the peripheral lipid-containing regions. This method computes an optimized placement of suppression bands in three dimensions and is based on the maximization of a criterion function. This criterion function maximizes coverage of peripheral lipid-containing areas and minimizes suppression of cortical brain regions and regions outside of the head. Computer simulation demonstrates automatic placement of 16 suppression slices to form a convex hull that covers peripheral lipid-containing regions above the base of the brain. In vivo metabolite mapping obtained with short echo time proton-echo-planar spectroscopic imaging shows that the automatic method yields a placement of suppression slices that is very similar to that of a skilled human operator in terms of lipid suppression and usable brain voxels.

MR spectroscopy of the human brain with enhanced signal intensity at ultrashort echo times on a clinical platform at 3T and 7T

Recently, the spin-echo full-intensity acquired localized (SPECIAL) spectroscopy technique was proposed to unite the advantages of short TEs on the order of milliseconds (ms) with full sensitivity and applied to in vivo rat brain. In the present study, SPECIAL was adapted and optimized for use on a clinical platform at 3T and 7T by combining interleaved water suppression (WS) and outer volume saturation (OVS), optimized sequence timing, and improved shimming using FASTMAP. High-quality single voxel spectra of human brain were acquired at TEs below or equal to 6 ms on a clinical 3T and 7T system for six volunteers. Narrow linewidths (6.6 +/- 0.6 Hz at 3T and 12.1 +/- 1.0 Hz at 7T for water) and the high signal-to-noise ratio (SNR) of the artifact-free spectra enabled the quantification of a neurochemical profile consisting of 18 metabolites with Cramér-Rao lower bounds (CRLBs) below 20% at both field strengths. The enhanced sensitivity and increased spectral resolution at 7T compared to 3T allowed a two-fold reduction in scan time, an increased precision of quantification for 12 metabolites, and the additional quantification of lactate with CRLB below 20%. Improved sensitivity at 7T was also demonstrated by a 1.7-fold increase in average SNR (= peak height/root mean square [RMS]-of-noise) per unit-time.

TU‐C‐330A‐05: Optimization of Outer Volume Suppression for Improved Prostate MR Spectroscopic Imaging

Purpose: To adapt a new MR Spectroscopy (MRS) technique employing non‐cuboidal voxels, called conformal voxel MRS (CV‐MRS), for use in prostate spectroscopic imaging in order to reduce contamination of spectra by lipid signal surrounding the prostate.Method and Materials: CV‐MRS uses twenty or more spatial saturation (SS) pulses, placed around the prostate, to reduce the lipid signal affecting the spectra within the prostate. A water/oil phantom was designed to simulate the prostate and surrounding lipid signal. Use of the new CV‐MRS technique reduced the lipid signal contamination by 84% as compared to standard cuboidal voxel MRS. To further reduce the lipid contamination, the routinely used 90 degree flip angle used for each SS pulse was modified to take into account the regrowth of lipid signal with its short T1 relaxation time. Results: Contrary to our expectations, resulting spectra from the optimized approach actually showed an increase in lipid contamination by 10%. We tracked the problem down to overlapping SS pulses. Using a simulated 3D model, we found that 68% of the volume we were trying to saturate experienced multiple overlapping SS pulses, with some regions being saturated 7 or more times. Regions of the volume experiencing an even number of SS pulses were found to increase the lipid contamination signal by 88% to 200%. Conversely, regions experiencing an odd number of SS pulses had a reduction in lipid contamination of 55%. Conclusion: Changing the ordering of the SS pulses, such that the overlapping pulses occur later in the train of 20 SS pulses reduced the problem of lipid signal from those overlapping volumes. In summary, we have developed an improved outer volume saturation technique which reduces lipid contamination problems in prostate MR spectroscopic imaging.

Two-dimensional excitation short echo time chemical shift imaging at 0.5 tesla.

Detection of short T2 metabolites such as glutamate and glutamine (glx) in the brain can be improved by minimizing the echo time (TE) of the pulse sequence. By combining two dimensions of localization during a single radiofrequency (RF) pulse, an elliptic excitation chemical shift imaging sequence (EECSI) that further reduces TE by a factor of 2 relative to a TE-optimized point resolved spectroscopy sequence chemical shift imaging sequence was developed. An additional set of outer volume saturation pulses is included to minimize the contamination from scalp and marrow space lipids. The sequence runs with conventional gradient hardware (1 G/cm, 17 T/m/s slew rate) at 0.5 T. The increase in the fitted areas of beta,gamma multiplet of glutamate and glx in a brain-mimicking phantom was by a factor of 1.66. In the thalamus of healthy volunteers, glx was increased by 1.44. Combined with the field strength-related improvements in glutamate and glx detection previously demonstrated at 0.5 T, EECSI offers further improvements for imaging glutamate and glx in vivo.

Regional metabolite levels of the normal posterior fossa studied by proton chemical shift imaging.

MR spectroscopy of the posterior fossa is pitted with numerous technical difficulties. It is, however, of great clinical interest in the study of the degenerative diseases and tumors of this area. We have developed a method to perform 2D CSI of this area, by using a sagittal slice and a careful positioning of outer volume saturation. We performed this acquisition in 30 healthy volunteers to determine the normal metabolic ratios in five voxels of this area (mesencephalon, pons, medulla oblongata, vermis, cerebellar white matter). The main technical difficulty was magnetic field inhomogeneity in the lower brainstem generated by dental alloys. However, 88% of the voxels were of sufficient quality to be analyzed. The statistically significant regional variations were a higher NAA/Cr ratio in the pons than in the medulla oblongata, higher Cho/Cr in the pons than in the mesencephalon and higher Cho/Cr in the cerebellar white matter than in the vermis. We conclude that 2D CSI of the brainstem, although technically delicate can be performed in most patients.

Very selective suppression pulses for clinical MRSI studies of brain and prostate cancer.

Focal three-dimensional magnetic resonance spectroscopic imaging (3D MRSI) methods based on conventional point resolved spectroscopy (PRESS) localization are compromised by the geometric restrictions in volume prescription and by chemical shift registration errors. Outer volume saturation (OVS) pulses have been applied to address the geometric limits, but conventional OVS pulses do little to overcome chemical shift registration error, are not particularly selective, and often leave substantial signals that can degrade the spectra of interest. In this paper, an optimized sequence of quadratic phase pulses is introduced to provide very selective spatial suppression with improved B1 and T1 insensitivity. This method was then validated in volunteer studies and in clinical 3D MRSI exams of brain tumors and prostate cancer.

Very short echo time proton MR spectroscopy of human brain with a standard transmit/receive surface coil.

A method for localized proton spectroscopy of the human brain is proposed which can be used with a standard transmit/receive planar surface coil producing an inhomogeneous RF field. Water suppression is accomplished by a train of full passage adiabatic pulses with optimized frequencies and delays, which account for variation in the water resonance frequency and the spin-lattice relaxation time. The robust method requires minimal pulse calibration and provides high-quality spectra even at very short echo times and in the absence of outer volume saturation and, therefore, is well suited for clinical in vivo spectroscopy. Performance of the method is demonstrated on a test object and on MR spectra from the human brain at 3 T.

In vivo 1H NMR spectroscopy of rat brain at 1 ms echo time.

Using optimized, asymmetric radiofrequency (RF) pulses for slice selection, the authors demonstrate that stimulated echo acquisition mode (STEAM) localization with ultra-short echo time (1 ms) is possible. Water suppression was designed to minimize sensitivity to B1 inhomogeneity using a combination of 7 variable power RF pulses with optimized relaxation delays (VAPOR). Residual water signal was well below the level of most observable metabolites. Contamination by the signals arising from outside the volume of interest was minimized by outer volume saturation using a series of hyperbolic secant RF pulses, resulting in a sharp volume definition. In conjunction with FASTMAP shimming (Gruetter Magn Reson Med 1993;29: 804-811), the short echo time of 1 msec resulted in highly resolved in vivo 1H nuclear magnetic resonance spectra. In rat brain the water linewidths of 11-13 Hz and metabolite singlet linewidths of 8-10 Hz were measured in 65 microl volumes. Very broad intense signals (delta v(1/2) > 1 kHz), as expected from membranes, for example, were not observed, suggesting that their proton T2 are well below 1 msec. The entire chemical shift range of 1H spectrum was observable, including resolved resonances from alanine, aspartate, choline group, creatine, GABA, glucose, glutamate, glutamine, myo-inositol, lactate, N-acetylaspartate, N-acetylaspartylglutamate, phosphocreatine, and taurine. At 9.4 T, peaks close to the water were observed, including the H-1 of alpha-D-glucose at 5.23 ppm and a tentative H-1 resonance of glycogen at 5.35 ppm.

Multisection proton MR spectroscopic imaging of the brain.

The authors developed a hydrogen-1 proton magnetic resonance (MR) imaging method in which metabolic information is acquired by obtaining multiple sections through the brain. A spin-echo sequence is used for section selection, an octangular outer volume saturation pulse for lipid suppression, and a chemical-shift-selective saturation pulse for water suppression. High-quality maps of choline, creatine, and N-acetylaspartate were obtained in six studies performed in four volunteers. Water and lipid signal from the skull area was well suppressed by the pulse sequence used.

Region-of-interest selection by outer-volume saturation

As the use of volume-selective nuclear magnetic resonance has become more widespread, both for high-resolution spectroscopy and for “zoom-imaging,” so techniques for extracting signal from a reduced volume of spins within an extended sample have proliferated. The most versatile and generally applicable are those involving magnetic field B,-, gradients in conjunction with selective RF pulses and they fall broadly into two groups: techniques which achieve localization by selectively exciting spins inside the volume of interest and those which saturate all the magnetization except that within the volume of interest. From the former group the STEAM (I) sequence, involving stimulated echoes, is probably the most easily implemented. As with all echo techniques, the results are T2 weighted, which rules out its application to short T2 species such as 31P metabolites, but proves favorable for water and lipid suppression in ‘H metabolite detection. DRESS (2) achieves good sensitivity with surface coils but also suffers from T2 limitations, while the OSIRIS (3) technique is useful for observing fast relaxing magnetization although it suffers from pulse bandwidth limitations and unlike STEAM, it is not feasible to shim on the selected volume. New techniques which achieve 2D selective excitation in a single radiofrequency/gradient pulse and are much less limited by T2 relaxation have recently been developed (4, 5). However, they also suffer from problems such as poor outer volume suppression, difficulty in moving the selected volume under computer control, and off-resonance effects. Localization methods which work by removing signal contributions from outside the volume of interest through saturation are particularly attractive because of their T2 independence, an important factor for 31P in vivo work. Such methods include VSE (6)) SPARS ( 7)) SPACE (8), and DIGGER ( 9). All of these selectively create transverse magnetization outside the volume of interest at some point in the pulse sequence which is then dephased by the applied field gradients, while magnetization inside the volume of interest is stored along the 2 axis. A problem common to all these existing techniques is the high RF power level required to saturate all the spins in the outer volume. Other problems associated with pulse bandwidth and pulse imperfections mean that spins near the edge of the sample are not fully saturated while some magnetization is excited inside the volume of interest. Also, since these tech-