Organic Osmotic Solutes Research Articles

Strategies of adaptation of microorganisms of the three domains of life to high salt concentrations.

Hypersaline environments with salt concentrations up to NaCl saturation are inhabited by a great diversity of microorganisms belonging to the three domains of life. They all must cope with the low water activity of their environment, but different strategies exist to provide osmotic balance of the cells' cytoplasm with the salinity of the medium. One option used by many halophilic Archaea and a few representatives of the Bacteria is to accumulate salts, mainly KCl and to adapt the entire intracellular machinery to function in the presence of molar concentrations of salts. A more widespread option is the synthesis or accumulation of organic osmotic, so-called compatible solutes. Here, we review the mechanisms of osmotic adaptation in a number of model organisms, including the KCl accumulating Halobacterium salinarum (Archaea) and Salinibacter ruber (Bacteria), Halomonas elongata as a representative of the Bacteria that synthesize organic osmotic solutes, eukaryotic microorganisms including the unicellular green alga Dunaliella salina and the black yeasts Hortaea werneckii and the basidiomycetous Wallemia ichthyophaga, which use glycerol and other compatible solutes. The strategies used by these model organisms and by additional halophilic microorganisms presented are then compared to obtain an integrative picture of the adaptations to life at high salt concentrations in the microbial world.

Glycine betaine is the main organic osmotic solute in a stratified microbial community in a hypersaline evaporitic gypsum crust

We have examined the organic osmotic solutes content within the stratified microbial communities in an evaporitic gypsum crust found in an evaporation pond (~194g/l total dissolved salts) of the salterns of the Israel Salt Company, Eilat. We extracted intracellular solutes from the upper three pigmented layers of the crust: a yellow-orange layer dominated by unicellular cyanobacteria, a green layer with filamentous cyanobacteria, and a layer colored red-purple by purple sulfur bacteria; dense communities of heterotrophic bacteria were present in all layers. The solutes were analyzed by Raman spectroscopy, (1)H and (13)C nuclear magnetic resonance, and HPLC. All layers contained glycine betaine as the only detectable osmotic solute; ectoine and other solutes known to be produced by many halophilic and halotolerant prokaryotes were not found. In this first attempt to assess the osmotic solute content within complex natural communities of halophilic microorganisms, the predominant role of glycine betaine as an osmolyte was established. Most heterotrophic bacteria cannot produce glycine betaine but preferentially use it when it is supplied. Presence of glycine betaine produced by the photoautotrophic members of the community, therefore, may relieve the heterotrophs from the need to synthesize other compounds at a high-energy cost.

Life at high salt concentrations, intracellular KCl concentrations, and acidic proteomes

Extremely halophilic microorganisms that accumulate KCl for osmotic balance (the Halobacteriaceae, Salinibacter) have a large excess of acidic amino acids in their proteins. This minireview explores the occurrence of acidic proteomes in halophiles of different physiology and phylogenetic affiliation. For fermentative bacteria of the order Halanaerobiales, known to accumulate KCl, an acidic proteome was predicted. However, this is not confirmed by genome analysis. The reported excess of acidic amino acids is due to a high content of Gln and Asn, which yield Glu and Asp upon acid hydrolysis. The closely related Halorhodospira halophila and Halorhodospira halochloris use different strategies to cope with high salt. The first has an acidic proteome and accumulates high KCl concentrations at high salt concentrations; the second does not accumulate KCl and lacks an acidic proteome. Acidic proteomes can be predicted from the genomes of some moderately halophilic aerobes that accumulate organic osmotic solutes (Halomonas elongata, Chromohalobacter salexigens) and some marine bacteria. Based on the information on cultured species it is possible to understand the pI profiles predicted from metagenomic data from hypersaline environments.

Use of Raman spectroscopy for identification of compatible solutes in halophilic bacteria

We explored the use of Raman spectroscopy to detect organic osmotic solutes as biomarkers in the moderately halophilic heterotrophic bacterium Halomonas elongata grown in complex medium (accumulation of glycine betaine) and in defined medium with glucose as carbon source (biosynthesis of ectoine), and in the anoxygenic phototrophic Ectothiorhodospira marismortui known to synthesize glycine betaine in combination with minor amounts of trehalose and N-α-carbamoyl glutamineamide. We tested different methods of preparation of the material: lyophilization, two-phase extraction of water-soluble molecules, and perchlorate extraction. Raman signals of glycine betaine and ectoine were detected; perchlorate extraction followed by desalting the extract on an ion retardation column gave the best results. Lyophilized cells of E. marismortui showed strong signals of carotenoid pigments, and glycine betaine could be detected only after perchlorate extraction and desalting. The data presented show that Raman spectroscopy is a suitable tool to assess the mode of osmotic adaptation used by halophilic microorganisms.

Raman spectra of osmotic solutes of halophiles

Organic osmotic solutes (compatible solutes) are accumulated within the cytoplasm of many microorganisms living in hypersaline environments to provide osmotic balance and to protect the cells against extreme osmotic pressure. Some hyperthermophilic prokaryotes also contain high intracellular concentrations of such compounds. A great diversity of organic osmotic solutes, including small sugars, sugar alcohols, amino acids, and amino acid derivatives, is found in nature. Thanks to the high concentrations in which these compounds are often present, Raman spectroscopy may be a useful technique for rapid analysis of such solute(s) both in individual organisms and in natural microbial communities in high‐salt environments, including the possible use of portable miniaturised Raman spectrometers outdoors. Here, we present a database of Raman spectra of some of the most commonly encountered compatible solutes, as well as some less common ones such as ectoine, hydroxyectoine, glycine betaine, glucosylglycerol, mannosylglycerate (potassium salt), and di‐myo‐inositol phosphate, complementing existing information on the Raman spectra of other such solutes such as glycerol, sucrose, and trehalose. Spectra were collected using excitation at 785 nm, and assignment of the major bands was proposed. The data presented complement our knowledge of the spectroscopic characteristics of biomolecules and enable the rapid assessment of the mode of osmotic adaptation used by halophilic microorganisms in culture; this information may be used to obtain information on the distribution of the different solutes in extreme environments on earth and has the added potential for astrobiological applications to estimate the presence of such solutes in stressed environments elsewhere in the universe. Copyright © 2011 John Wiley & Sons, Ltd.

Structural adaptation of extreme halophilic proteins through decrease of conserved hydrophobic contact surface

BackgroundHalophiles are extremophilic microorganisms growing optimally at high salt concentrations. There are two strategies used by halophiles to maintain proper osmotic pressure in their cytoplasm: accumulation of molar concentrations of potassium and chloride with extensive adaptation of the intracellular macromolecules ("salt-in" strategy) or biosynthesis and/or accumulation of organic osmotic solutes ("osmolyte" strategy). Our work was aimed at contributing to the understanding of the shared molecular mechanisms of protein haloadaptation through a detailed and systematic comparison of a sample of several three-dimensional structures of halophilic and non-halophilic proteins. Structural differences observed between the "salt-in" and the mesophilic homologous proteins were contrasted to those observed between the "osmolyte" and mesophilic pairs.ResultsThe results suggest that haloadaptation strategy in the presence of molar salt concentration, but not of osmolytes, necessitates a weakening of the hydrophobic interactions, in particular at the level of conserved hydrophobic contacts. Weakening of these interactions counterbalances their strengthening by the presence of salts in solution and may help the structure preventing aggregation and/or loss of function in hypersaline environments.ConclusionsConsidering the significant increase of biotechnology applications of halophiles, the understanding of halophilicity can provide the theoretical basis for the engineering of proteins of great interest because stable at concentrations of salts that cause the denaturation or aggregation of the majority of macromolecules.

The extremely halophilic bacterium Salicola marasensis IC10 accumulates the compatible solute betaine

The extremely halophilic bacterium strain IC10 was isolated from a solar saltern on Isla Cristina (southern Spain). Phylogenetic, genotypic and phenotypic data supported the inclusion of this strain in the species Salicola marasensis. An analysis of intracellular organic osmotic solutes showed glycine betaine to be present, contributing to the overall osmotic balance, and this was the only compatible solute accumulated when S. marasensis IC10 was grown over a wide range of external NaCl concentrations (10–25%, w/v).

Structural determination of the O-chain polysaccharide from the haloalkaliphilic Halomonas alkaliantarctica bacterium strain CRSS

In hypersaline environments there are plenty of microorganisms belonging to both Bacteria and Archaea domains. These extremophiles have developed biochemical adaptations which comprise the accumulation of molar concentrations of potassium and chloride and the biosynthesis and/or the accumulation of organic osmotic solutes (osmolytes) within the cytoplasm. Moreover, to maintain the turgor of the cells halophiles enhance the production of anionic phospholipids and alter the fatty acid composition of the membrane lipids, but very little is known about adaptational structural changes of the lipopolysaccharides (LPS), the main constituent of the outer leaflet of the outer membrane of Gram-negative bacteria. The aim of this work is to investigate the chemical structure of these LPS in order to provide insight into the adaptation mechanism of halophiles to live at high salt concentration. For this, Halomonas alkaliantarctica, a haloalkaliphilic Gram-negative bacterium isolated from salt sediments of a saline lake in Cape Russell in the Antarctic continent, was cultivated and the LPS were extracted and analysed. The structure of the O-chain of the LPS from H. alkaliantarctica was determined by chemical analysis, 1-D and 2-D NMR spectroscopy. The polysaccharide was constituted of a linear trisaccharidic repeating unit as follows: →3)-β- l-Rha p-(1→4)-α- l-Rha p-(1→3)-α- l-Rha p-(1→ A comparison among the O-chain structures of H. alkaliantarctica and other Halomonas species is also reported.

Metabolism of chloride in halophilic prokaryotes.

While much understanding has been achieved on the intracellular sodium and potassium concentrations of halophilic and halotolerant microorganisms and on their regulation, we know little on the metabolism of anions. Archaea of the family Halobacteriaceae contain molar concentrations of chloride, which is pumped into the cells by cotransport with sodium ions and/or using the light-driven primary chloride pump halorhodopsin. Most halophilic and halotolerant representatives of the bacterial domain contain low intracellular ion concentrations, with organic osmotic solutes providing osmotic balance. However, some species show a specific requirement for chloride. In Halobacillus halophilus certain functions, such as growth, endospore germination, motility and flagellar synthesis, and glycine betaine transport are chloride dependent. In this organism the expression of a large number of proteins is chloride regulated. Other moderately halophilic Bacteria such as Halomonas elongata do not show a specific demand for chloride. A very high requirement for chloride was demonstrated in two groups of Bacteria that accumulate inorganic salts intracellularly rather than using organic osmotic solutes: the anaerobic Halanaerobiales and the aerobic extremely halophilic Salinibacter ruber. It is thus becoming increasingly clear that chloride has specific functions in haloadaptation in different groups of halophilic microorganisms.

Bioenergetic aspects of halophilism.

Examination of microbial diversity in environments of increasing salt concentrations indicates that certain types of dissimilatory metabolism do not occur at the highest salinities. Examples are methanogenesis for H2 + CO2 or from acetate, dissimilatory sulfate reduction with oxidation of acetate, and autotrophic nitrification. Occurrence of the different metabolic types is correlated with the free-energy change associated with the dissimilatory reactions. Life at high salt concentrations is energetically expensive. Most bacteria and also the methanogenic Archaea produce high intracellular concentrations of organic osmotic solutes at a high energetic cost. All halophilic microorganisms expend large amounts of energy to maintain steep gradients of NA+ and K+ concentrations across their cytoplasmic membrane. The energetic cost of salt adaptation probably dictates what types of metabolism can support life at the highest salt concentrations. Use of KCl as an intracellular solute, while requiring far-reaching adaptations of the intracellular machinery, is energetically more favorable than production of organic-compatible solutes. This may explain why the anaerobic halophilic fermentative bacteria (order Haloanaerobiales) use this strategy and also why halophilic homoacetogenic bacteria that produce acetate from H2 + CO2 exist whereas methanogens that use the same substrates in a reaction with a similar free-energy yield do not.

The ecology and taxonomy of anaerobic halophilic eubacteria

Abstract A number of obligately anaerobic chemoorganotrophic moderately halophilic bacteria have been isolated from the bottom sediments of the Dead Sea and the Great Salt Lake, Utah: (1) Halobacteroides halobius , a long motile rod from the Dead Sea, fermenting sugars to ethanol, acetate, H 2 and CO 2 ; (2) Clostridium lortetii , a rod-shaped bacterium from the Dead Sea, producing endospores with attached gas vacuoles; (3) a spore-forming motile rod-shaped bacterium, fermenting sugars, isolated from the Dead Sea; (4) Haloanaerobium praevalens , isolated from the Great Salt Lake, fermenting carbohydrates, peptides, amino acids and pectin to acetate, propionate, butyrate, H 2 and CO 2 . Analysis of their 16S rRNA shows that these organisms are related to each other, but unrelated to any of the other subgroups of the eubacterial kingdom, to which they belong. Ha. praevalens and Hb. halobius regulate their internal osmotic pressure by the accumulation of salt (Na + , K + , Cl − ) rather than by organic osmotic solutes.

The ecology and taxonomy of anaerobic halophilic eubacteria

A number of obligately anaerobic chemoorganotrophic moderately halophilic bacteria have been isolated from the bottom sediments of the Dead Sea and the Great Salt Lake, Utah: (1) Halobacteroides halobius, a long motile rod from the Dead Sea, fermenting sugars to ethanol, acetate, H 2 and CO 2; (2) Clostridium lortetii, a rod-shaped bacterium from the Dead Sea, producing endospores with attached gas vacuoles; (3) a spore-forming motile rod-shaped bacterium, fermenting sugars, isolated from the Dead Sea; (4) Haloanaerobium praevalens, isolated from the Great Salt Lake, fermenting carbohydrates, peptides, amino acids and pectin to acetate, propionate, butyrate, H 2 and CO 2. Analysis of their 16S rRNA shows that these organisms are related to each other, but unrelated to any of the other subgroups of the eubacterial kingdom, to which they belong. Ha. praevalens and Hb. halobius regulate their internal osmotic pressure by the accumulation of salt (Na +, K +, Cl −) rather than by organic osmotic solutes.