The molybdenum (Mo) isotope composition (defined as δ98Mo measured per mil relative to NIST-3134) of many modern arc systems and the upper continental crust is heavier than the mantle and most subducting slab lithologies. This observation has led to a model whereby fluids leaving the slab transfer isotopically heavy Mo preferentially to the mantle wedge, leaving the residual slab isotopically lighter. We explore this model via an Mo isotope study of the metasedimentary and mélange lithologies of the Catalina Schist in California. These rocks record subduction zone metamorphism over a wide range of high-pressure/low-to-medium temperature conditions.Mo isotope compositions of the metasedimentary rocks decrease with increasing metamorphic grade, from a δ98Momean of −0.04 ± 0.13 ‰ (1σ, n = 3) for the lawsonite albite facies to −0.38 ± 0.07 ‰ (1σ, n = 5) for the epidote–amphibolite facies. The highest grade [amphibolite facies] samples show a slight uptick in δ98Mo values, with a mean of −0.19± 0.14 ‰ (1σ, n = 4). When coupled with major and trace element variations, the changes in δ98Mo appear to reflect metamorphic effects rather than sedimentary source rock heterogeneity. The positive relationship between δ98Mo and [Mo] and negative relationship with Ce/Mo argue for progressive loss of Mo with isotope fractionation during increasing P-T conditions; the reversal of this trend, seen in the increase in δ98Mo between the epidote amphibolite and amphibolite facies may reflect a subsequent partial re-fertilization by fluids carrying isotopically heavy Mo. δ98Mo values in the mélange across all grades are highly variable, ranging from −1.75 to −0.19, consistent with large scale mobilization of Mo with isotope fractionation. A metasomatized amphibolite block and reaction rind show similar light isotope compositions and signs of Mo depletion and transport. Together these three whole-rock data sets demonstrate pervasive open system behavior and mobility of Mo in the Catalina Schist. LA-ICP-MS Mo measurement of minerals in the differing metasedimentary metamorphic grades indicates that Fe oxides and/or hydroxides, titanite, rutile, and epidote are important reservoirs of Mo but when comparing mineral Mo content and modal abundance to whole-rock Mo concentrations, several samples were found to have “missing Mo”, something that has been observed in other Mo inventory studies. We attribute this to sample heterogeneity between the thin section and whole-rock powder scales.