In the last decades, the substantial demands for 13CH4 detection in oil, natural gas, and geological prospecting have been increasing. Among the commonly used gas detection methods, Fourier Transform Infrared Spectroscopy has the advantages of a short detection cycle and simultaneous detection of many gas components, but it has not been realized for the online analysis of 13CH4. In this paper, we propose a double model analysis method for 13CH4 concentration based on Fourier Transform Infrared Spectroscopy. This method uses a Fourier Transform Infrared Spectrometer to obtain infrared absorption spectra of gases containing 13CH4. It corrects the drift of the spectral baseline using the adaptive smoothness parameter penalized least square method. In addition, aiming to have a more fine-grained result, we categorize the volume concentration into two intervals (1 ×10−6-0.5 % and 0.5 %–100 %) for quantitative analysis, and combine a Novel Frequency control and Regression Coefficients method for characteristic variable extraction and quantitative analysis modeling to exclude the effect of other alkane gases on 13CH4 detection. We conducted a series of experiments and the results demonstrate that our proposed double model analysis method is capable of fast 13CH4 detection from mixed gas with a detection error lower than 2 % and a detection cycle shorter than 12 s for the concentration ranges from 1 × 10−6 (1ppmv) up to 100 %. Finally, we have accurately analyzed the 13CH4 content in the gas-producing formation from oilfield logging experiments.