One-electron Oxidation Potentials Research Articles

Charge Transfer Mechanism in Guanine-Based Self-Assembled Monolayers on a Gold Surface.

In this work, we have theoretically determined the one-electron oxidation potentials and charge transfer mechanisms in complex systems based on a self-assembled monolayer of guanine molecules adsorbed on a gold surface through different organic linkers. Classical molecular dynamics simulations were carried out to sample the conformational space of both the neutral and the cationic species. Thus, the redox potentials were determined for the ensembles of geometries through multiscale quantum-mechanics/molecular-mechanics/continuum solvation model calculations in the framework of the Marcus theory and in combination with an additive scheme previously developed. In this context, conformational sampling, description of the environment, and effects caused by the linker have been considered. Applying this methodology, we unravel the phenomena of electric current transport by evaluating the different stages in which charge transfer could occur. The results revealed how the positive charge migrates from the organic layer to the gold surface. Specifically, the transport mechanism seems to take place mainly along a single ligand and driven with the help of the electrostatic interactions of the surrounding molecules. Aside, several self-assembled monolayers with different linkers have been analyzed to understand how the nature of that moiety can tune the redox properties and the efficiency of the transport. We have found that the conjugation between the guanine and the linker, at the same time conjugated to the gold surface, gives rise to a more efficient transport. In conclusion, the established computational protocol sheds light on the mechanism behind charge transport in electrochemical DNA-based biosensor nanodevices.

Charge Transfer Mechanism in Guanine-Based Self-Assembled Monolayers on a Gold Surface.

In this work, we have theoretically determined the one-electron oxidation potentials and charge transfer mechanisms in complex systems based on a self-assembled monolayer of guanine molecules adsorbed on a gold surface through different organic linkers. Classical molecular dynamics simulations were carried out to sample the conformational space of both the neutral and the cationic species. Thus, the redox potentials were determined for the ensembles of geometries through multiscale quantum-mechanics/molecular-mechanics/continuum solvation model calculations in the framework of the Marcus theory and in combination with an additive scheme previously developed. In this context, conformational sampling, description of the environment, and effects caused by the linker have been considered. Applying this methodology, we unravel the phenomena of electric current transport by evaluating the different stages in which charge transfer could occur. The results revealed how the positive charge migrates from the organic layer to the gold surface. Specifically, the transport mechanism seems to take place mainly along a single ligand and driven with the help of the electrostatic interactions of the surrounding molecules. Aside, several self-assembled monolayers with different linkers have been analyzed to understand how the nature of that moiety can tune the redox properties and the efficiency of the transport. We have found that the conjugation between the guanine and the linker, at the same time conjugated to the gold surface, gives rise to a more efficient transport. In conclusion, the established computational protocol sheds light on the mechanism behind charge transport in electrochemical DNA-based biosensor nanodevices.

Scandium Ion-Promoted Electron-Transfer Disproportionation of 2-Phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl 3-Oxide (PTIO•) in Acetonitrile and Its Regeneration Induced by Water.

2-Phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl 3-oxide (PTIO•), a persistent nitronyl nitroxide radical, has been used for the detection and trapping of nitric oxide, as a redox mediator for batteries, for the activity estimation of antioxidants, and so on. However, there is no report on the reactivity of PTIO• in the presence of redox-inactive metal ions. In this study, it is demonstrated that the addition of scandium triflate, Sc(OTf)3 (OTf = OSO2CF3), to an acetonitrile (MeCN) solution of PTIO• resulted in an electron-transfer disproportionation to generate the corresponding cation (PTIO+) and anion (PTIO-), the latter of which is suggested to be stabilized by Sc3+ to form [(PTIO)Sc]2+. The decay of the absorption band at 361 nm due to PTIO•, monitored using a stopped-flow technique, obeyed second-order kinetics. The second-order rate constant for the disproportionation, thus determined, increased with increasing the Sc(OTf)3 concentration to reach a constant value. A drastic change in the cyclic voltammogram recorded for PTIO• in deaerated MeCN containing 0.10 M Bu4NClO4 was also observed upon addition of Sc(OTf)3, suggesting that the large positive shift of the one-electron reduction potential of PTIO• (equivalent to the one-electron oxidation potential of PTIO-) in the presence of Sc(OTf)3 may result in the disproportionation. When H2O was added to the PTIO•-Sc(OTf)3 system in deaerated MeCN, PTIO• was completely regenerated. It is suggested that the complex formation of Sc3+ with H2O may weaken the interaction between PTIO- and Sc3+, leading to electron-transfer comproportionation to regenerate PTIO•. The reversible disproportionation of PTIO• was also confirmed by electron paramagnetic resonance (EPR) spectroscopy.

Insights into the Enhanced Photogeneration of Hydroxyl Radicals from Chlorinated Dissolved Organic Matter.

Free available chlorine has been and is being applied in global water treatment and readily reacts with dissolved organic matter (DOM) in aquatic environments, leading to the formation of chlorinated products. Chlorination enhances the photoreactivity of DOM, but the influence of chlorinated compounds on the photogeneration of hydroxyl radicals (•OH) has remained unexplored. In this study, a range of chlorinated carboxylate-substituted phenolic model compounds were employed to assess their •OH photogeneration capabilities. These compounds demonstrated a substantial capacity for •OH production, exhibiting quantum yields of 0.1-5.9 × 10-3 through direct photolysis under 305 nm and 0.2-9.5 × 10-3 through a triplet sensitizer (4-benzoylbenzoic acid)-inducing reaction under 365 nm LED irradiation. Moreover, the chlorinated compounds exhibited higher light absorption and •OH quantum yields compared to those of their unchlorinated counterparts. The •OH photogeneration capacity of these compounds exhibited a positive correlation with their triplet state one-electron oxidation potentials. Molecular-level compositional analysis revealed that aromatic structures rich in hydroxyl and carboxyl groups (e.g., O/C > 0.5 with H/C < 1.5) within DOM serve as crucial sources of •OH, and chlorination of these compounds significantly enhances their capacity to generate •OH upon irradiation. This study provides novel insights into the enhanced photogeneration of •OH from chlorinated DOM, which is helpful for understanding the fate of trace pollutants in chlorinated waters.

Experimental determination and QSAR analysis of the rate constants for [formula omitted] reactions with aromatic micropollutants in water

S(IV)-based systems used for advanced oxidation processes (AOPs) have been constructed for the degradation of organic contaminants via oxysulfur radicals, including SO3•−, SO4•−, and SO5•−. Although SO5•− is proposed as an active species in AOPs processes, research on the reactivity of SO5•− has remained unclear. In this work, 53 target aromatic micropollutants (AMPs), including 13 phenols, 27 amines, and 13 PPCPs were selected to determine the second-order reaction rate constants for SO5•− using the competitive kinetics method, in which the kSO5•− values, observed at pH 4 ranged from (2.44 ± 0.00) × 105 M−1 s−1 to (4.41 ± 0.28) × 107 M−1 s−1. Quantitative structure-activity relationship (QSAR) models for the oxidation of AMPs by SO5•− were developed based on 40 kSO5•− values of amines and phenols, and their molecular descriptors, using the stepwise multiple linear regression method. This comprehensive model exhibited the excellent goodness-of-fit (Radj2 = 0.802), robustness (QLOO2 = 0.749), and predictability (Qext2 = 0.656), and the one-electron oxidation potential (Eox), energy of the highest occupied molecular orbital energy (EHOMO), and most positive net atomic charge on the carbon atoms (qC+) were considered the most influential descriptors for the comprehensive model, indicating that SO5•− oxidizes pollutants via single electron transfer reaction and exhibits a strong oxidation capacity, especially for pollutants containing electron-donating groups. Moreover, the kSO5•− values of 13 PPCPs were predicted using this comprehensive model, which suggested the practical application significance of the QSAR model. This study emphasizes the direct oxidation capacity of SO5•−, which is important to evaluate and simulate AOPs based on S(IV).

One-Electron Oxidation Potentials and Hole Delocalization in Heterogeneous Single-Stranded DNA.

The study of DNA processes is essential to understand not only its intrinsic biological functions but also its role in many innovative applications. The use of DNA as a nanowire or electrochemical biosensor leads to the need for a deep investigation of the charge transfer process along the strand as well as of the redox properties. In this contribution, the one-electron oxidation potential and the charge delocalization of the hole formed after oxidation are computationally investigated for different heterogeneous single-stranded DNA strands. We have established a two-step protocol: (i) molecular dynamics simulations in the frame of quantum mechanics/molecular mechanics (QM/MM) were performed to sample the conformational space; (ii) energetic properties were then obtained within a QM1/QM2/continuum approach in combination with the Marcus theory over an ensemble of selected geometries. The results reveal that the one-electron oxidation potential in the heterogeneous strands can be seen as a linear combination of that property within the homogeneous strands. In addition, the hole delocalization between different nucleobases is, in general, small, supporting the conclusion of a hopping mechanism for charge transport along the strands. However, charge delocalization becomes more important, and so does the tunneling mechanism contribution, when the reducing power of the nucleobases forming the strand is similar. Moreover, charge delocalization is slightly enhanced when there is a correlation between pairs of some of the interbase coordinates of the strand: twist/shift, twist/slide, shift/slide, and rise/tilt. However, the internal structure of the strand is not the predominant factor for hole delocalization but the specific sequence of nucleotides that compose the strand.

Generation of FeIV=O and its Contribution to Fenton-Like Reactions on a Single-Atom Iron-N-C Catalyst.

Generating FeIV=O on single-atom catalysts by Fenton-like reaction has been established for water treatment; however, its generation pathway and oxidation behavior remain obscure. Here, using a Fe-N-C catalyst with typical Fe-N4 moiety to activate peroxymonosulfate (PMS), we demonstrate that generating FeIV=O is mediated by the first-formed Fe-N-C-PMS* complex, a well-recognized nonradical species inducing electron-transfer oxidation, and determined by the adjacent Fe sites with specific Fe1-Fe1 distance. After the Fe atoms with Fe1-Fe1 distance <4 Å are PMS-saturated, Fe-N-C-PMS* formed on those with Fe1-Fe1 distance of 4-5 Å can coordinate with the adjacent FeII-N4, forming an inter-complex with enhanced charge transfer to produce FeIV=O. FeIV=O enables the Fenton-like system to efficiently oxidize various pollutants in a substrate-specific, pH-tolerated and sustainable manner, where its prominent contribution manifests for the pollutants with higher one-electron oxidation potential.

Quantitative structure-activity relationship for the photooxidation of aromatic micro-pollutants induced by graphene oxide in water

The photocatalytic degradation behavior of aromatic micro-pollutants (AMPs) exhibits complexity and uncertainty, which mainly depends on the properties of different substituents on benzene. And with similar catalytic reaction substrates, the reaction rate constant could reveal the influence of different characteristics of molecular structure in a specific system. Therefore, the photooxidation pseudo first-order kinetic rate constants (kobs) of 30 AMPs were experimentally determined in Photo-GO system. A quantitative structure-activity relationship (QSAR) model for predicting the photooxidation reaction of AMPs has been developed by stepwise multiple linear regression (MLR) method, based on the lg kobs and representative molecule descriptors (20 in total) including physicochemical, quantum chemical and electrostatic descriptors. Afterwards, Radj2, QLOO2, and Qext2 were calculated as 0.870, 0.841, and 0.732 respectively, which exhibited the excellent goodness-of-fit, robustness, and predictability of the QSAR model, indicating its great prediction ability for photooxidation behavior of AMPs. Meanwhile, during the photooxidation process of AMPs with GO, the model revealed that the one-electron oxidation potential (Eox), molecular dipole moment (μ), and number of hydrogen bond donors (#HD) were the most important molecular structural parameters, which showed that the single electron transfer pathway and adsorption were as the significant steps. Additionally, the Hammett correlation showed that photooxidation of AMPs in Photo-GO system is of typical electrophilic reactions, which demonstrated that the electron-donating substituents could promote the photooxidation of AMPs. The QSAR model was constructed and evaluated to perform the prediction of AMPs reaction kinetics, which provided a guidance for the study of the mechanism and selective oxidation of AOPs photooxidation system based on GO.

Insights into the mechanism of carbocatalysis for peracetic acid activation: Kinetic discernment and active site identification

Peracetic-acid-based advanced oxidation processes (PAA-AOPs) on metal-free catalysts have emerged as charming strategies for water contaminant removal. However, the involved reactive species and their corresponding active sites are ambiguous. Herein, using carbon nanotube (CNT) as a model carbocatalyst, we demonstrated that, under neutral conditions, the CNT−PAA* complex was the dominant reactive species to oxidize phenolic compounds via electron-transfer process (ETP), whereas the surface-bound hydroxyl radicals (·OHsurface) played a minor role on the basis of quenching and electrochemical tests as well as Raman spectroscopy. More importantly, the experimental and density functional theory (DFT) calculation results collaboratively proved that the active site for ETP was the sp2-hybridized carbon on the CNT bulk, while that for radical generation was the edge-located hydroxyl group (C−OH), which lowered the energy barrier for cleaving the O−O bond in CNT−PAA* complex. We further discerned the oxidation kinetic constants (koxid) of different pollutants from the apparent kinetic constants in CNT/PAA system. The significant negative linear correlation between lnkoxid and half-wave potential of phenolic compounds suggests that the pollutants with a lower one-electron oxidation potential (i.e., stronger electron-donating ability) are more easily oxidized. Overall, this study scrutinizes the hybrid radical and non-radical mechanism and the corresponding active sites of the CNT/PAA system, providing insights into the application of PAA-AOPs and the development of ETP in the remediation of emerging organic pollutants.

Reactivity of nitrogen species with inorganic and organic compounds in water.

Many studies on the reactive nitrogen species (RNS, ●NO2, ●NO and ●NH2) with pollutants in water have been performed to understand the abatement of inorganic and organic compounds by these species, and the mechanisms of the formation of oxidative transformation products, especially nitrogenous oxidized byproducts. In this review, approaches to generate RNS in aqueous solution is first presented, followed by a summary of their reactivity with a wide range of compounds. The second-order rate constants (k, M-1 s-1) for the reactivity of ●NO2 and ●NO with a wide range of inorganic radical and nonradical species were correlated with thermodynamic one-electron oxidation potentials (E0). The positive correlation between log(k) versus E0 suggests one-electron transfer reactions. The Hammett-type correlations were developed for the reactions of ●NO2 and ●NH2 with organic compounds, using the unsubstituted benzene as a reference molecule (i.e., Σσo,p,m=0) to calculate Σσo,p,m=σo+σp+σm for each organic molecule. Linear negative correlations of log(k) with Σσo,p,m were obtained for both ●NO2 and ●NH2, suggesting electrophilic substitution mechanism. The correlations presented herein may assist in eliminating organic micropollutants in water treatment and reuse processes.

Computation of Oxidation Potentials of Solvated Nucleobases by Static and Dynamic Multilayer Approaches.

The determination of the redox properties of nucleobases is of paramount importance to get insight into the charge-transfer processes in which they are involved, such as those occurring in DNA-inspired biosensors. Although many theoretical and experimental studies have been conducted, the value of the one-electron oxidation potentials of nucleobases is not well-defined. Moreover, the most appropriate theoretical protocol to model the redox properties has not been established yet. In this work, we have implemented and evaluated different static and dynamic approaches to compute the one-electron oxidation potentials of solvated nucleobases. In the static framework, two thermodynamic cycles have been tested to assess their accuracy against the direct determination of oxidation potentials from the adiabatic ionization energies. Then, the introduction of vibrational sampling, the effect of implicit and explicit solvation models, and the application of the Marcus theory have been analyzed through dynamic methods. The results revealed that the static direct determination provides more accurate results than thermodynamic cycles. Moreover, the effect of sampling has not shown to be relevant, and the results are improved within the dynamic framework when the Marcus theory is applied, especially in explicit solvent, with respect to the direct approach. Finally, the presence of different tautomers in water does not affect significantly the one-electron oxidation potentials.

Trinuclear Nickel Catalyst for Water Oxidation: Intramolecular Proton-Coupled Electron Transfer Triggered Trimetallic Cooperative O–O Bond Formation

Trinuclear Nickel Catalyst for Water Oxidation: Intramolecular Proton-Coupled Electron Transfer Triggered Trimetallic Cooperative O–O Bond Formation

Prediction of the standard potentials for one-electron oxidation of N,N,N',N' tetrasubstituted p-phenylenediamines by calculation.

The formal potentials for the reversible one-electron oxidation of N,N,N',N' tetrasubstituted p-phenylenediamines in acetonitrile have been applied as a test set for benchmarking computational methods for a series of compounds with only small structural differences. The aim of the study is to propose a simple method for calculating the standard oxidation potentials, and therefore, the protocol is progressively developed by adding more terms in the energy expression. In addition, the effect of including implicit solvation models (IEFPCM, CPCM, and SMD), larger basis sets, and correlation methods are investigated. The oxidation potentials calculated using the G3MP2B3 approach with IEFPCM resulted in the best fit (R2 = 0.9624), but the slope of the correlation line, 0.74, is far from the optimal value, 1.00. B3LYP/6-311++G(d,p) and TPSSh/6-311++G(2d,p) yielded only slightly less consistent data (R2 = 0.9388 and R2 = 0.9425), but with much better slopes, 1.00 and 0.94, respectively. We conclude that it is important to investigate the basis set size and treatment of electron correlation when calculating oxidation potentials for N,N,N',N' tetrasubstituted p-phenylenediamines.

Enhanced transformation of aquatic organic compounds by long-lived photooxidants (LLPO) produced from dissolved organic matter

Dissolved organic matter (DOM) plays a crucial role in the photochemical transformation of organic contaminants in natural aquatic systems. The present study focuses on the characterization of a specific effect previously observed for electron-rich phenols, consisting in an acceleration of the DOM-photosensitized transformation of target compounds at low concentrations (< 1 µM). This effect was hypothesized to be caused by DOM-derived "long-lived" photooxidants (LLPO). Pseudo-first-order rate constants for the transformation of several phenols, anilines, sulfonamide antibiotics and phenylureas photosensitized by Suwannee River fulvic acid were determined under steady−state irradiation using the UVA and visible wavelengths from a medium-pressure mercury lamp. A significant enhancement (by a factor of 2.4 − 16) of the first-order transformation rate constant of various electron-rich target compounds was observed for an initial concentration of 0.1 μM compared to 5 μM . This effect points to a relevant reactivity of these compounds with LLPO. For phenols and anilines the enhancement effect occurred only above certain standard one-electron oxidation potentials. From these data series the standard one-electron reduction potential of LLPO was estimated to be in the range of 1.0 − 1.3 V versus the standard hydrogen electrode. LLPO are proposed to mainly consist of phenoxyl radicals formed by photooxidation of electron-poor phenolic moieties of the DOM. The plausibility of this hypothesis was successfully tested by studying the photosensitized transformation kinetics of 3,4-dimethoxyphenol in aqueous solutions containing a model photosensitizer (2-acetonaphthone) and a model electron-poor phenol (4-cyanophenol) as DOM surrogates.

One-electron oxidation of ds(5'-GGG-3') and ds(5'-G(8OG)G-3') and the nature of hole distribution: a density functional theory (DFT) study.

Of particular interest in radiation-induced charge transfer processes in DNA is the extent of hole localization immediately after ionization and subsequent relaxation. To address this, we considered double stranded oligomers containing guanine (G) and 8-oxoguanine (8OG), i.e., ds(5'-GGG-3') and ds(5'-G8OGG-3') in B-DNA conformation. Using DFT, we calculated a variety of properties, viz., vertical and adiabatic ionization potentials, spin density distributions in oxidized stacks, solvent and solute reorganization energies and one-electron oxidation potential (E0) in the aqueous phase. Calculations for the vertical state of the -GGG- cation radical showed that the spin was found mainly (67%) on the middle G. However, upon relaxation to the adiabatic -GGG- cation radical, the spin localized (96%) on the 5'-G, as observed in experiments. Hole localizations on the middle G and 3'-G were higher in energy by 0.5 kcal mol-1 and 0.4 kcal mol-1, respectively, than that of 5'-G. In the -G8OGG- cation radical, the spin localized only on the 8OG in both vertical and adiabatic states. The calculated vertical ionization potentials of -GGG- and -G8OGG- stacks were found to be lower than that of the vertical ionization potential of a single G in DNA. The calculated E0 values of -GGG- and -G8OGG- stacks are 1.15 and 0.90 V, respectively, which owing to stacking effects are substantially lower than the corresponding experimental E0 values of their monomers (1.49 and 1.18 V, respectively). SOMO to HOMO level switching is observed in these oxidized stacks. Consequently, our calculations predict that local double oxidations in DNA will form triplet diradical states, which are especially significant for high LET radiations.

Mechanistic inference on the reaction kinetics of phenols and anilines in carbon nanotubes-activated peroxydisulfate systems: pp-LFERs and QSARs analyses

There is increasing interest in persulfate (peroxydisulfate (PDS) and peroxymonosulfate (PMS)) activation by (non-toxic) metal-free catalysts for advanced oxidation of organic contaminants. Nevertheless, the non-radical reaction mechanisms of these catalytic reactions are not well understood. Herein, we provide mechanistic inference on the non-radical reaction pathway of the carbon nanotubes (CNTs)/persulfate system and the associated kinetics. We determined the initial degradation rates of 18 phenols and 4 anilines at various initial concentrations by commercial multiwalled carbon nanotubes (MWCNTs) and peroxydisulfate (PDS), which followed binary Langmuir–Hinshelwood kinetics. Polyparameter linear free energy relationships (pp-LFERs) and quantitative structure-activity relationships (QSARs) were developed for the equilibrium adsorption constant (K) and the surface reaction rate constant (kr). QSAR analyses for logK suggested that affinity interactions between organics and MWCNTs are mainly related to π-π interactions. The molecular volume term (V) in the pp-LEFRs contributes the most to the interaction, indicating hydrophobic interactions are also significant. QSAR analyses for log kr indicated one-electron oxidation potential (Eox, representing single-electron transfer ability) and polarizability (α) are predominant factors affecting the reactivity of aromatic organics towards MWCNTs/PDS. Additionally, non-radical reactions occur between adsorbed aromatic compounds and adsorbed PDS, indicating that surface interactions and reactions with MWCNTs dominate the overall reaction rates.

One-electron oxidation and redox potential of nucleobases and deoxyribonucleosides computed by QM/MM simulations

Our work provides a simple method in QM/MM simulations to estimate one-electron oxidation and redox potential of DNA components using linear response approximation. The standard one-electron oxidation and redox potential of four deoxyribonucleosides (dRNs) and their nucleobases are computed using the referenced quantities from present and previous QM/MM computations. The computational oxidation potentials of dA and dG agree with experimental values. The orders of dRN oxidation and reduction potential are dG < dA < dC ≈ dT and dA ≈ dG < dC ≈ dT separately. Our results suggest that ribose produces large effect on reduction potential and has a small contribution to oxidation potential of dA, dG, and dC.

Photodegradation of Fludioxonil and Other Pyrroles: The Importance of Indirect Photodegradation for Understanding Environmental Fate and Photoproduct Formation.

Fludioxonil is a pyrrole-containing pesticide whose registration as a plant protection product is currently under review in the United States and Europe. There are concerns over its potential persistence and toxicity in the aquatic environment; however, the pyrrole moiety represents a potential reaction site for indirect photodegradation. In this study, the direct and indirect photodegradation of fludioxonil, along with pyrrole, 3-cyanopyrrole, and 3-phenylpyrrole, were investigated. Results showed that pyrrole moieties are capable of undergoing direct photoionization and sensitized photooxidation to form radical cation species, which then likely deprotonate and react with dissolved oxygen. Additionally, pyrrole moieties can undergo reactions with singlet oxygen (1O2). Furthermore, the presence of electron-withdrawing or -donating substituents substantially impacted the reaction rate with 1O2 as well as the one-electron oxidation potential of the pyrrole that dictates reactions with triplet states of dissolved organic matter (3CDOM*). For fludioxonil, which can undergo both direct and indirect photodegradation, the reaction rate constant with 1O2 alone resulted in a predicted t1/2 < 2 days in waters under sunlit near-surface conditions, suggesting it will not be persistent in aquatic systems. These results are useful for evaluating the environmental fate of fludioxonil as well as other pyrrole compounds.

Oxidation potentials of guanine, guanosine and guanosine-5′-monophosphate: Theory and experiment

Guanine, having lower one-electron oxidation potential than other nucleobases, is of relevance to oxidative degradation of nucleic acids in mutagenesis, carcinogenesis, and aging. Here we compare oxidation potentials of guanine (G), guanosine (Guo), deoxyguanosine (dGuo), guanosine -5′- monophosphate (GMP) and 2′- deoxyguanosine -5′- monophosphate (dGMP) obtained by theoretical and experimental methods. Structures of G species were optimized and the identities of minima were verified by vibration frequency calculations. Redox equilibria were modelled in terms of corresponding thermochemical cycles. The changes in free energy were calculated at DFT level using the two different functionals: (i) general purpose B3LYP functional, and (ii) more specific ωB97X-D functional (both with 6-31 + G(d) basis set). Experimental oxidation potentials of all G analogues were measured voltammetrically on a polymer pencil graphite electrode (pPeGE) providing the best results from all carbon electrodes used (glassy carbon electrode, basal and edge plane pyrolytic graphite electrodes). The oxidation process is strongly dependent on the pH value and with increasing pH a linear shift of G oxidation peaks (Epa) towards negative potentials is observed. The theoretically and experimentally obtained oxidation potentials were compared for the pH 5. Anodic peak potentials increase in the order G « dGMP ≤ GMP < dGuo ≤ Guo and correlate with the calculated thermodynamic redox potentials as well as with NBO charges in purine moiety. The oxidation of deoxy analogues was predicted theoretically to occur at lower potentials than that of corresponding parent compounds and this fact was experimentally verified. The assumption that due to negatively charged phosphate group of GMP or dGMP their oxidation potentials could be observed at lower positive potential has not been confirmed and the significant difference (more than 200 mV) between the oxidation potentials of G nucleobase and its nucleosides and nucleotides is discussed. Moreover, conformity of theoretical and experimental data for radicals (cation, neutral) indicates that while the deprotonation process of G differs from its analogues, the oxidation process of all species takes place on imidazole ring.

Aqueous reactions of organic triplet excited states with atmospheric alkenes

Abstract. Triplet excited states of organic matter are formed when colored organic matter (i.e., brown carbon) absorbs light. While these “triplets” can be important photooxidants in atmospheric drops and particles (e.g., they rapidly oxidize phenols), very little is known about their reactivity toward many classes of organic compounds in the atmosphere. Here we measure the bimolecular rate constants of the triplet excited state of benzophenone (3BP∗), a model species, with 17 water-soluble C3–C6 alkenes that have either been found in the atmosphere or are reasonable surrogates for identified species. Measured rate constants (kALK+3BP∗) vary by a factor of 30 and are in the range of (0.24–7.5) ×109 M−1 s−1. Biogenic alkenes found in the atmosphere – e.g., cis-3-hexen-1-ol, cis-3-hexenyl acetate, and methyl jasmonate – react rapidly, with rate constants above 1×109 M−1 s−1. Rate constants depend on alkene characteristics such as the location of the double bond, stereochemistry, and alkyl substitution on the double bond. There is a reasonable correlation between kALK+3BP∗ and the calculated one-electron oxidation potential (OP) of the alkenes (R2=0.58); in contrast, rate constants are not correlated with bond dissociation enthalpies, bond dissociation free energies, or computed energy barriers for hydrogen abstraction. Using the OP relationship, we estimate aqueous rate constants for a number of unsaturated isoprene and limonene oxidation products with 3BP∗: values are in the range of (0.080–1.7) ×109 M−1 s−1, with generally faster values for limonene products. Rate constants with less reactive triplets, which are probably more environmentally relevant, are likely roughly 25 times slower. Using our predicted rate constants, along with values for other reactions from the literature, we conclude that triplets are probably minor oxidants for isoprene- and limonene-related compounds in cloudy or foggy atmospheres, except in cases in which the triplets are very reactive.