The integration of organic wastes into cement-based materials shows promise as a solution to mitigate environmental pollutants. It achieves this by minimizing waste sent to landfills and in some conditions decreasing Portland cement use. One of these organic wastes that produces positive effects when used in cement products is olive seed. In this study, the effect of a new generation bio-polymeric admixture on the physical and mechanical properties of cement mortars is examined in detail. The bio-polymeric admixture is prepared by grinding olive seeds in 0/125μm sizes. The olive seeds have been used as bio-polymeric admixture in cement mortars at different rates, i.e., 0, 0.2, 0.35, 0.5, 1 and 1.5% of total weight. The olive seed is characterized by XRD, FT-IR analysis and by determining extracts, pectin, cellulose, hemicellulose and lignin content. The characteristics of hydration products were analyzed by SEM/EDS and XRD investigations. Effect of bio-polymeric admixture addition on the unit weight, flowability, setting time, compressive and flexural strength and capillary water absorption was analyzed. The results suggested that the bio-polymeric admixture hindered the cement hydration at low usage rates but promoted at high usage rates. Accordingly, 28days compressive and flexural strength of test samples decreased. However, 1.5 wt% bio-polymeric admixture was associated with a slight increase of 150-days compressive strength. Bio-polymeric admixture improves the hydrophobicity property of the hardened mortar samples by declining effect on the water absorption. Another important effect of the bio-polymeric admixture contribution was also observed on the flowability property of the cement mortars. As the bio-polymeric admixture increased, the flow diameter values of the mortar were also significantly increased. The research outcomes suggested for the first time the beneficial effect of bio-polymeric admixture as a natural and bio-degradable alternative of chemical admixtures on especially flowability, set retarder and hydrophobicity of cement mortars with comparable mechanical properties.