Olive Flounder Paralichthys Olivaceus Research Articles

Kinetics of viral hemorrhagic septicemia virus (VHSV) and immune response in olive flounder (Paralichthys olivaceus) at altered temperature

Viral hemorrhagic septicemia virus (VHSV) is a pathogen that causes hemorrhagic septicemia in olive flounder at water temperatures below 15 °C, leading to symptoms such as abdominal swelling due to ascites and muscle hemorrhaging, and in severe cases, mortality. In this study, we investigated the proliferation of NCCs, the transcriptional analysis of CD4 and CD8, and the expression of pro-inflammatory cytokines (IL-1β, IL6, TNFα) and the cytokines (IL12, IL15, IFN-1β, IFNγ) involved in cytotoxic cell activation in the kidney of olive flounder during VHSV infection at suboptimal temperature (17 °C) and following a shift to optimal temperature (10 °C). Following viral infection, the population of NCCs and CD8 gene expression steadily increased. Meanwhile, IL12, IL15, and IFN-1β levels exhibited an early surge, reaching their peak within 1–2 days post-challenge at 17 °C. Notably, in olive flounder that were re-challenged with VHSV at 10 °C after an initial challenge at 17 °C, there was a rapid and robust expansion of NCCs and increased CD4 and CD8 gene expression, demonstrating the mounting of immune memory by NCCs and an efficient adaptive immune response from CD4+ and CD8+ T cells against VHSV infection.

Organic Coatings Reduce Dissolution Rate by an Order of Magnitude for Carbonate Minerals Produced by Marine Fish

AbstractMarine carbonate production and dissolution are important components of the global carbon cycle and the marine alkalinity budget. Global carbonate production by marine fish (ichthyocarbonate) has been estimated to be as high as 9.03 Pg CaCO3 yr−1; however, the fate of ichthyocarbonate is poorly understood. High magnesium concentrations in ichthyocarbonate would traditionally suggest rapid dissolution under current marine conditions, but a correlation between dissolution rate and mol%MgCO3 has not been observed. Here, we aim to determine the role of organic coatings on dissolution rates of ichthyocarbonate in marine environments. We applied a combination of petrographic, geochemical, and microCT approaches to assess the quantity and distribution of organic matter in ichthyocarbonate produced by two species of marine fish, the Gulf toadfish (Opsanus beta) and the Olive flounder (Paralichthys olivaceus). We show that organic matter, including external coatings and embedded organic material, is volumetrically significant, ranging from 8.5% to 32.3% of ichthyocarbonate by volume. Bleach oxidation of external organic matter coatings increased the dissolution rate of ichthyocarbonate by more than an order of magnitude, suggesting these coatings serve to reduce reactive surface area of the mineral fraction in ichthyocarbonate. Assuming that organic coatings do not influence sinking rates, external coatings extend the depth of ichthyocarbonate persistence in the water column by ∼12–15×. Therefore, organic coatings are an important determinant of the role of ichthyocarbonate in the marine carbon cycle.

Effects of Substituting Fishmeal with Soy Protein Concentrate Supplemented with Essential Amino Acids in the Olive Flounder (Paralichthys olivaceus) Diet on the Expression of Genes Related to Growth, Stress, Immunity, and Digestive Enzyme.

This study identified the effects of substituting fishmeal (FM) with soy protein concentrate (SPC) supplemented with lysine and methionine in the olive flounder (Paralichthys olivaceus) diet on the expression of genes related to growth, stress, immunity, and digestion. Three experimental diets were prepared; the control diet (Con) contained 60% FM, and the experimental diets contained 25% (SPC25) and 50% (SPC50) FM replaced by SPC. After the 140-day feeding period, weight gain, specific growth rate, feed availability, biological indices, and chemical composition of the muscle were not significantly affected by the dietary treatments. The gene expression levels of growth-related genes (IGF, GFB-3), immune-related genes (IL-8 and caspase), and stress-related genes (SOD, GPX, PRX, TRX) were higher in Con fish than in those fed the SPC25 and SPC50 diets. Chymo-TRY2, TRY2, and TRY3 in the stomach of fish fed the SPC25 diet were higher than fish fed the Con or SPC50 diets. TRY2 and lipase of fish fed the SPC25 diet were higher than those of fish fed the other diets but TRY3 was not significantly affected by the treatments in the intestine. In conclusion, substituting 25% FM with SPC was the most effective diet for the expression of growth, immune, stress, and digestive enzyme genes.

Real‐time estimation of olive flounder growth in indoor aquaculture using cameras combined with a grid

AbstractEstimating fish growth in real time has many benefits for indoor aquaculture farms, such as saving labor time and costs, reducing water pollution during feeding, improving feeding activity and determining when to harvest. Hence, this study proposed a visual‐information‐based method for measuring olive flounder (Paralichthys olivaceus) length, using accurate growth tracking for efficient aquaculture management. Using two cameras, an light‐emitting‐diode (LED) grid was placed at the bottom of the water tank to measure fish length. The pixels unit from the fish length in the captured image was converted to centimeters based on the relationship of a pre‐built dataset. A total of 180 lengths were calculated using images captured by the cameras. The average length of each fish acquired from the cameras was calculated separately, and Lagrange's interpolating polynomial algorithm was implemented to calculate the overall length of each fish. This method reduced the computational complexity, and results were obtained more rapidly and in a user‐friendly environment. The power model generated the length–weight relationship, which allowed us to estimate the body weight of each olive flounder based on the length. The proposed approach enabled us to calculate the length of olive flounders with a highly accurate R2 of 0.995.

Therapeutic Effect of Decellularized Extracellular Matrix from Fish Skin for Accelerating Skin Regeneration.

A cellular matrix derived from natural tissue functions as a highly biocompatible and versatile material for wound healing application. It provides a complex and highly organized environment with biological molecules and physical stimuli. Recently, various kinds of tissue/organ decellularized extracellular matrixes (dECMs) from bovine and porcine have been used as biomedical applications to support tissue regeneration but inherit religious restrictions and the risk of disease transmission to humans. Marine fish-derived dECMs are seen as attractive alternatives due to their similarity to mammalian physiology, reduced biological risks, and fewer religious restrictions. The aim of this study was to derive a decellularized matrix from the olive flounder (Paralichthys olivaceus) skin and evaluate its suitability as a wound healing application. Olive flounder skin was treated with a series of chemical treatments to remove cellular components. Decellularized fish skin (dFS) was confirmed to be successful in decellularization by evaluating the DNA content (2.84%). The dFS was characterized and evaluated in vivo to assess its biological activities. The mouse wound defect model was used to evaluate the in vivo performance of the dFS compared with that of the decellularized porcine skin (dPS). The resultant dFS was shown to enhance wound healing compared with the no-treatment group and dPS. This study suggests that dFS has potential for skin regeneration application.

Identification of candidate genes and pathways involved in the establishment of sexual size dimorphism in the olive flounder (Paralichthys olivaceus) using RNA-seq

Olive flounder (Paralichthys olivaceus) is a valuable mariculture fish that shows female-biased sexual size dimorphism (SSD), yet the molecular mechanisms responsible for this phenomenon remain poorly understood. In this study, the growth differences between females and males were compared, and comparative transcriptome analyses of brains/pituitaries, livers, muscles, and gonads from 13-month-old females and males were performed. The critical time window for SSD was from 13- to 14-month-old, with females reaching significantly larger sizes than males. Muscle cell size and plasma growth hormone (GH), insulin-like growth factor 1 and 2 (IGF1, IGF2), 11-ketotestosterone (11-KT), and 17β-estradiol (E2) levels had no significant differences between the sexes of 13- and 14-month-old flounders. Furthermore, the RNA-seq data revealed differential expression in the genes encoding the receptors for these hormones, suggesting that regulation may occur at the receptor level, potentially leading to SSD during the critical window. RNA-seq analysis identified 88, 645, 414, and 15,833 differentially expressed genes between females and males in brains/pituitaries, livers, muscles, and gonads, respectively. KEGG (Kyoto Encyclopedia of Genes and Genomes) and GSEA-based KEGG analyses revealed that some pathways associated with growth and development, including “prolactin signaling pathway” in brains/pituitaries, “cell cycle”, “oocyte meiosis”, and “DNA replication” in livers, “focal adhesion”, “ECM-receptor interaction”, “protein digestion and absorption”, “arginine and proline metabolism”, and “cysteine and methionine metabolism” in muscles, and “Hippo signaling pathway” and “JAK-STAT signaling pathway” in gonads may be involved in the establishment of sexual growth differences. Notably, females had lower steroid hormone synthesis abilities than males in brains/pituitaries, livers, and gonads, indicating the importance of sex steroid hormones in the establishment of SSD. Moreover, genes including frizzled3 (fzd3) and prolactin (prl) in brains/pituitaries, and growth hormone receptor (ghr), estrogen receptor (esr1), insulin-like growth factor binding protein-3 (igfbp3), bone morphogenetic protein 8A-like (bmp8a), leptin receptor (lepr), and lipoprotein lipase-like (lpl) in livers emerge as potential candidates for the establishment of SSD. In conclusion, this study may help clarify the molecular mechanisms involved in SSD-related growth traits in flounder and provide basic data for genetic breeding of flounder.

Evaluation of low-fish meal diets containing animal byproducts and plant protein sources for juvenile olive flounder Paralichthys olivaceus

Evaluation of low-fish meal diets containing animal byproducts and plant protein sources for juvenile olive flounder Paralichthys olivaceus

Inclusion Effect of Various Levels of Jack Mackerel Meal in Olive Flounder (Paralichthys olivaceus) Diets Substituting 50% Fish Meal with Duck By-Product Meal on Growth and Feed Utilization.

This experiment was performed to evaluate the inclusion impact of various levels of jack mackerel meal (JMM) in olive flounder (P. olivaceus) feeds substituting 50% FM by duck by-product meal (DBM) on growth, feed availability, and economic efficiency. Seven experimental diets were prepared. The control (Con) diet contained 60% FM. Fifty percent FM in the Con diet was substituted with DBM, and then the graded levels (0%, 10%, 20%, 30%, 40%, and 50%) of JMM were added instead of FM, named the DJ0, DJ10, DJ20, DJ30, DJ40, and DJ50 diets, respectively. All feeds were assigned to triplicate fish groups. At the end of 56 days' feeding, fish fed the DJ40 and DJ50 diets exhibited comparable weight gain and specific growth rate to fish fed the Con diet. Higher feed consumption was observed in fish fed the Con, DJ40, and DJ50 diets compared to fish fed the DJ0 and DJ10 diets. Lower feed conversion ratio was observed in fish fed the Con diet compared to fish fed the DJ0, DJ10, DJ20, and DJ30 diets. Furthermore, the DJ50 diet led to the highest economic profit index (EPI). In conclusion, inclusion of 50% JMM in the olive flounder diet replacing 50% FM with DBM seems to be the most recommendable dietary treatment based on growth and feed consumption of olive flounder and EPI.

Development of a TGC-based growth model for the olive flounder, Paralichthys olivaceus, and its application in developing a fish growth simulator architecture

Temperature is one of the main factors affecting fish growth. Many studies have proposed a fish growth model considering the effect of temperature. Among these models, the TGC (thermal growth coefficient) model which digitized the influence of temperature on fish growth is the most notable. The original TGC model was made in the form of applying 1/3 as an exponent, but subsequent studies have shown that it is necessary to apply different exponent value or other constant depending on the dynamics of growth. In this study, the original TGC model using 1/3 as an exponent and the new model using 2/3 as an exponent were compared for olive flounder (Paralichthys olivaceus). The seasonal temperature function under the conditions of the flow-through system was applied and the transition point of change in the growth dynamics was obtained by comparing the instantaneous growth rate of the two TGC models. Around 541 g of the transition point was obtained, and a combined TGC model was presented that integrated the two models. However, the growth prediction model based on these statistical techniques does not reflect real-time changes in each parameter and requires academic knowledge, making it difficult to use in the actual field. Recently, as the smart aquaculture industry incorporating ICT (information and communication technologies) has grown rapidly, many solutions such as fish growth prediction simulators using statistical growth models have been developed. Therefore, in this study, input and output variables were classified and software architectures were presented so that the statistical form of fish growth model using TGC derived above could be applied when developing a fish growth prediction simulator. Deriving these growth models and interpreting them into languages in the field of ICT will enhance the field applicability of academic research results as a part of smart aquaculture technology.

Antiviral effects of umbelliferone against viral hemorrhagic septicemia virus in olive flounder (Paralichthys olivaceus)

Viral hemorrhagic septicemia virus (VHSV) poses a significant threat to global aquaculture, prompting ongoing efforts to identify potential drug candidates for disease prevention. Coumarin derivatives have recently emerged as a promising class of compounds effective against rhabdoviruses, which severely impact the aquaculture industry. In this study, we assessed the anti-VHSV activity of umbelliferone (7-hydroxycoumarin) in fathead minnow (FHM) cells and olive flounder Paralichthys olivaceus. Umbelliferone exhibited an EC50 of 100 μg/mL by reducing cytopathic effect, with a maximum cytotoxicity of 30.9 % at 750 μg/mL. Mechanistic analyses via a time-course plaque reduction assay revealed that direct incubation with the virus for 1 h resulted in 97.0 ± 1.8 % plaque reduction, showing excellent direct virucidal activity. Pretreatment for 4 h resulted in a 33.5 ± 7.8 % plaque reduction, which increased with longer incubation times. Cotreatment led to a 33.5 ± 2.9 % plaque reduction, suggesting interference with viral binding, whereas postinfection treatment proved less effective. Umbelliferone was prophylactically administered to the olive flounder through short-term (3 days) and long-term (14 days) medicated feeding, followed by a 4-day postinfection period. Short-term administration at 100 mg/kg body weight (bw)/day resulted in the highest relative percent survival (RPS) of 56 %, whereas long-term administration achieved a maximum RPS of 44 % at 30 mg/kg bw/day. Umbelliferone administration delayed mortality at these doses. Additionally, umbelliferone significantly inhibited the expression of the VHSV N gene during viral challenge, with no observed toxic effects in fish up to an administration dose of 30 mg/kg bw/day for 28 days. Our findings suggest that the protective mechanism of short-term administration of 100 mg umbelliferone against VHSV infection may involve the overexpression of TLR2, MDA5, STAT1, and NF-κB at 24 h postinfection (hpi). IL-8 and IFN II expression was upregulated, whereas TNF-α, IL-1β, and IFN I expression was suppressed at 24 hpi. The upregulation of ISG15 at 48 hpi may contribute to the inhibition of VHSV replication, whereas the downregulation of Caspase 3 expression at 96 hpi suggests a possible inhibition of virus-induced apoptosis at later infection stages. Overall, umbelliferone exhibited anti-VHSV activity through multiple mechanisms, with the added advantage of convenient administration via medicated feed.

The extracellular matrix protein EFEMP2 is involved in the response to VHSV infection in the olive flounder Paralichthys olivaceus

The EGF-containing fibulin-like extracellular matrix protein 2 (EFEMP2) is involved in connective tissue development, elastic fiber formation, and tumor growth. In this study, we characterized the cDNA of EFEMP2 (PoEFEMP2), a member of the fibulin family of ECM proteins, in the olive flounder Paralichthys olivaceus. The coding region of PoEFEMP2 encodes a protein that contains six calcium-binding EGF-like (EGF-CA) domains and four complement Clr-like EGF-like (cEGF) domains. PoEFEMP2 shows 67.51–96.77 % similarities to orthologs in a variety of fish species. PoEFEMP2 mRNA was detected in all tissues examined; the highest levels of PoEFEMP2 mRNA expression were observed in the heart, testis, ovary and muscle. The PoEFEMP2 mRNA level increases during early development. In addition, the PoEFEMP2 mRNA level increased at 3 h post-infection (hpi) and decreased from 6 to 48 hpi in flounder Hirame natural embryo (HINAE) cells infected with viral hemorrhagic septicemia virus (VHSV). Disruption of PoEFEMP2 using the clustered regularly interspaced short palindromic repeats/CRISPR-associated-9 (CRISPR/Cas9) system resulted in a significant upregulation of VHSV G mRNA levels and immune-related genes expression in knockout cells. These findings implicate PoEFEMP2 in antiviral responses in P. olivaceus.

Inclusion effect of jack mackerel meal in olive flounder (Paralichthys olivaceus) diet substituting blended fish meal with tuna by-product meal on growth, feed availability, and economic efficiency

The low fish meal (FM) diet commonly causes deteriorated palatability, and eventually leads to lowered feed consumption and growth performance of fish. This study was, therefore, designed to determine inclusion impact of the graded levels of jack mackerel meal (JMM) in olive flounder (P. olivaceus) diets replacing 50% FM with tuna by-product meal (TBM) on growth, feed availability, biochemical composition, blood chemistry, and economic efficiency. Six isonitrogenous (55.5%) and isolipidic (10.0%) diets were formulated. Sixty percent FM was incorporated in the control (Con) diet. In the Con diet, fifty percent of FM was replaced by TBM, and then 10, 20, 30, 40, and 50% JMM were included at the cost of FM, referred as the TJ10, TJ20, TJ30, TJ40, and TJ50 diets, respectively. Three hundred and sixty juvenile fish (18.0 ± 0.01g; mean ± SD) were delivered into 18, 50-L flow-through tanks. All diets were randomly assigned to triplicate groups of fish. Fish were hand-fed to apparent satiation twice daily for 56 days. Weight gain, specific growth rate, and feed consumption of fish fed the TJ30, TJ40, and TJ50 diets were significantly (P < 0.001, P < 0.001, and P < 0.002, respectively) greater than those of fish fed the Con and TJ10 diets, but not significantly (P > 0.05) different from those of fish fed the TJ20 diet. Feed utilization, proximate composition, amino acid profiles, and blood chemistry of fish were not significantly (P > 0.05) altered by dietary treatments. However, the TJ30 diet was the most recommendable to farmers in terms of economic profit index (EPI). Conclusively, 30% inclusion of JMM is the most recommendable in the olive flounder diet substituting 50% FM with TBM based on growth performance, feed availability, and EPI.

Evaluation of Gamma-Aminobutyric Acid (GABA) as a Functional Feed Ingredient on Growth Performance, Immune Enhancement, and Disease Resistance in Olive Flounder (Paralichthys olivaceus) under High Stocking Density.

Gamma-aminobutyric acid (GABA) is a non-protein amino acid that is found in the brain and central nervous system of animals as an inhibitory neurotransmitter. It has been shown to have a variety of physiological functions, including stress reduction and immune enhancement. This study investigated the effects of dietary supplementation with GABA on growth, serum biochemistry, innate immunity, and disease resistance in juvenile olive flounders (Paralichthys olivaceus) challenged with Edwardsiella tarda under high-stocking density. A control diet and three experimental diets were prepared, with 150 mg/kg (GABA150), 200 mg/kg (GABA200), and 250 mg/kg (GABA250) of GABA added to each diet, respectively. Each experimental diet was fed to olive flounders in triplicate with an initial weight of 12.75 g ± 0.3 g in 40 L tanks at two stocking densities: normal density (20 fish/tank) and high density (40 fish/tank). After 8 weeks of the feeding trial, growth, feed utilization, whole-body proximate compositions, blood analyses, and non-specific immune responses were measured, and challenge tests were performed. There were no significant differences in the weight gain (WG) and specific growth rate (SGR) among fish fed the GABA-supplemented diets at the two stocking densities. However, the normal-density groups showed significantly higher WG and SGR than the high-density groups (p < 0.05). There was no significant difference in feed efficiency and protein efficiency ratio among all groups. Moreover, there was no significant difference in the whole-body proximate composition analysis (p > 0.05). There were no significant differences in cortisol levels in fish fed the GABA at both densities, but the high-density group showed a significantly higher cortisol than the low-density group. Blood GABA significantly increased in a dose-dependent manner regardless of the density groups (p < 0.05). Superoxide dismutase activity showed significantly higher levels than the control group, but there was no significant effect of the stocking densities in fish fed the GABA diets (p < 0.05). Myeloperoxidase activities in fish fed the GABA200 and GABA250 diets showed significantly higher levels at both of the stocking densities (p < 0.05). Lysozyme activity was significantly higher in the GABA150 group than in the CON, GABA200, and GABA250 groups (p < 0.05). After 15 days of challenge tests with Edwardsiella tarda, the cumulative survival rates of the GABA150, GABA200, and GABA250 groups were significantly higher than that of the CON group (p < 0.05). The results suggested that the optimal dietary GABA level for juvenile olive flounder culture is 150 mg/kg, regardless of rearing density, to enhance growth, immunity, and disease resistance.

Water temperature and immunization period required to establish immunity against the viral hemorrhagic septicemia virus vaccine in olive flounder (Paralichthys olivaceus)

Water temperature is a crucial factor for adaptive immune responses in fish vaccinology, wherein the immune effects of vaccines are time × temperature (degree-days) dependent i.e. the higher the water temperature, the faster the fish develop protective immunity in response to the vaccine. In contrast, at low water temperature there happened to be reduced or no protective efficacy of vaccines as reported by several studies. Previously, we developed a squalene and aluminium hydroxide (Sq + Al) – based inactivated viral hemorrhagic septicemia virus (VHSV) vaccine, which showed good promises as a potential immunoprotective agent against VHSV infection in olive flounder (Paralichthys olivaceus) with >50% relative percent survival (RPS) at 3 to 40 weeks post-vaccination. In continuation, the present study investigated the role of the ambient water temperatures (at 10, 13, 15, and 20 °C) and immunization periods (10, 20, 30, and 40 days post-vaccination) on the development of protective efficacy of the developed (Sq + Al) – based vaccine in olive flounder using three in vivo experimental trials. The results showed fish immunized at 20 °C obtained significantly high protection starting at 10 dpv (200 degree-days) with a RPS of 86.67% (trial I), 66.67% (trial II), and 90.89% (trial III). Challenge tests at 20, 30, and 40 dpv also conferred a high level of protection when the fish were immunized at 20 °C. Moreover, immunization at 15 and 13 °C showed the best results, the RPS at 20, 30, and 40 dpv were 88.07–90.96% at 15 °C and 87.89–72.84% at 13 °C for trial I and II, respectively. Interestingly, olive flounder immunized at 10 °C also exhibited 20.00–80.02% RPS at 10–40 dpv, however in relative terms the protection was lower and slower as compared to immunization at 13, 15, and 20 °C. In addition, the study also displayed significant upregulation of various immune genes and higher specific antibody titers in the fish immunized both at 10 °C as well as 20 °C (trial III). Further, the vaccine groups showed comparatively high protection when 300 degree-days were reached in the respective groups irrespective of the temperature at which immunization was carried out. Thus, the present study indicates useful guidelines for sufficient time requirement of the (Sq + Al) – based inactivated VHSV vaccine to show its full protective efficacy against the virus in olive flounder.

Comprehensive surveillance and molecular profiling of viral infections in cultured olive flounder (Paralichthys olivaceus) across Jeju Island, South Korea

To effectively control viral diseases, ongoing research into virus detection and their genetic characteristics is imperative. We conducted an analysis of the prevalence of five species of viruses in olive flounder (Paralichthys olivaceus) farms in Jeju, specifically viral haemorrhagic septicaemia virus (VHSV), lymphocystis disease virus (LCDV), marine birnavirus (MABV), nervous necrosis virus (NNV), and flounder iridovirus (FLIV). Between July and December 2022, a total of 3282 olive flounders were monitored. VHSV and LCDV were detected in 116 and 173 olive flounders, respectively, confirming detection rates of 3.5% and 5.4%. The highest detection rate for VHSV occurred in December (12.5%), while for LCDV, it was in June (13.8%). MABV, NNV, and FLIV were not detected. Phylogenetic analysis of 19 VHSV isolates collected from 2010 to 2022 revealed that all VHSVs belonged to the IVa genotype based on the nucleoprotein gene. Mutations were identified, indicating genetic variability extending to protein mutations. Additionally, continuous and specific nucleotide mutations of VHSV were confirmed on Jeju Island, a central hub for the aquaculture of olive flounder. These observed mutations in VHSV are considered valuable markers for tracking future mutations in subsequent studies. LCDV isolates were classified under genotype II. The results of the phylogenetic analyses of VHSV, a negative-sense single-stranded RNA virus, and LCDV, a double-stranded DNA virus, provide insights into the mutation patterns of marine viruses.

Genomic prediction model optimization for growth traits of olive flounder (Paralichthys olivaceus)

Genomic prediction (GP) has emerged an effective tool for addressing the many shortcomings of traditional selective breeding, thereby enhancing the selection process. In this study, we optimized GP methods using 5-fold cross-validation to estimate genome-estimated breeding values for the weight traits of olive flounder (Paralichthys olivaceus). To accomplish our goal, we determined the parentage of the target broodstock and the ability of 11 prediction models to predict the weight traits of 1.8-year-old olive flounders, which were genotyped using a 70 K single nucleotide polymorphism (SNP) array. Moreover, our optimization efforts toward the predictive ability of genomic best linear unbiased prediction (GBLUP), Bayesian B (BB), and random forest (RF) methods encompassed changes in various aspects such as fixed effects, SNP quantity, population size, and phenotypic data collected at different fish ages. Additionally, we assessed the predictive ability for the total length and body depth of fish using GBLUP, BB, and RF. Among the 11 prediction methods used in this study, the BB (0.675), Elastic Net (0.679), and RF (0.698) methods exhibited the highest predictive abilities, whereas the GBLUP (0.637) method demonstrated the lowest. Incorporating information regarding fish sex as a fixed effect substantially improved the predictive ability of GBLUP and BB. For mean models, utilizing 3000–5000 random SNP markers resulted in a higher predictive ability, similar to that obtained using 50,000 SNPs. Increasing the population size reduced the standard deviation of the predictive ability. Notably, phenotypic records from 1.8-year-old fish exhibited a significantly higher predictive ability than those from the other age groups. Furthermore, GBLUP, BB, and RF provided higher predictive abilities for length (0.655–0.852) and body depth (0.665–0.861). These findings may significantly shape future olive flounder genomic selection programs and offer valuable insights into GP in aquaculture.

Identification of moonlighting adhesins of highly-adhesive Lactobacillus plantarum PO23 isolated from the intestine of Paralichthys olivaceus

At present, feeding probiotics has been an effective method to prevent and control enterogenous diseases of cultured fish. It is very important and urgent to study the molecular mechanism of the adhesion and colonization of probiotics to improve the use efficiency accurately. In our previous research, highly-adhesive Lactobacillus plantarum PO23 (LP-PO23) was isolated from the intestine of olive flounder (Paralichthys olivaceus). To clarify the specific adhesion of LP-PO23 to intestinal epithelial cells (IECs), six adhesins, d-lactate dehydrogenase (LDH), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), elongation factor Tu (EF-Tu), enolase (ENO), 60 kDa chaperonin (Cpn60) and chaperone protein DnaK (DnaK) were identified as moonlighting proteins by far-Western blot and liquid chromatography-mass spectrometry in this research. The recombinant proteins rLDH, rGAPDH, rEF-Tu, rENO, rCpn60 and rDnak containing FLAG tag were expressed and employed as antigens to produce mouse polyclonal antibodies (pAbs). Using pAbs, Western blot, immunofluorescence (IF) and immunoelectron microscopy (IEM) were carried out to confirm the surface distribution of six adhesins on LP-PO23 cells respectively. Finally, the specific binding of rLDH, rGAPDH, rEF-Tu, rENO, rCpn60 and rDnak to IECs was verified by IF. In binding inhibition assay, the mouse anti-GAPDH pAb displayed the strongest inhibition activity among six pAbs. These results confirmed that six moonlighting adhesins participated in the specific adhesion of LP-PO23 to IECs and would facilitate understanding the adhesion mechanism of lactobacilli.

Association Between Muscle Growth and Transcription of a Mutant MSTN Gene in Olive Flounder (Paralichthys olivaceus).

Myostatin (MSTN, also known as growth differentiation factor-8 (GDF-8)), a member of the transforming growth factor β (TGF-β) superfamily, functions as a negative regulator of skeletal muscle development and growth. However, it is also expressed in a wide range of tissues in fish and thus may have more diverse roles in this group than in mammals. In this study, we assessed the genome-wide transcriptional expression pattern associated with the CRISPR/Cas9-mutated MSTN gene in the olive flounder (Paralichthys olivaceus) in association with changes in cell proliferation and transportation processes. There were no differences in the hepatosomatic index, and the growth of male and female fish increased in the F1 progeny of the MSTN mutants. Furthermore, the histopathological analysis showed that myostatin editing resulted in a 41.24% increase in back muscle growth and 46.92% increase in belly muscle growth in male flounder compared with normal flounder, and a 16.01% increase in back muscle growth and 14.26% increase in belly muscle growth in female flounder compared with normal flounder. This study demonstrates that editing of the myostatin gene enhances muscle growth in olive flounder, with a notably more pronounced effect observed in males. Consequently, myostatin-edited male flounder could represent a valuable asset for the flounder aquaculture industry.

Fish Meal Substitution Effects with the Combined Animal Proteins in the Feeds of Olive Flounder (Paralichthys olivaceus) on Growth Performance, Feed Availability, and Disease Resistance against Streptococcus iniae.

This study aims to reveal the substitution impact of fish meal (FM) with the combined meat meal and chicken by-product meal (CMC) in the olive flounder (P. olivaceus) feeds on growth and feed availability. Seven experimental feeds were formulated. The control (CMC0) diet included 65% FM. In the CMC0 diet, the various (10%, 20%, 40%, 60%, 80%, and 100%) levels of FM were replaced with CMC, named as the CMC10, CMC20, CMC40, CMC60, CMC80, and CMC100 diets, respectively. The total number of 525 juvenile fish (9.2 ± 0.01 g; mean ± SD) was placed into 21 50-L flow-through tanks (25 juveniles/tank) with three replicates. Fish were hand-fed to apparent satiation for 8 weeks. After the 8-week feeding experiment, olive flounder fed the CMC10 (40.0 ± 0.60 g/fish, 2.99 ± 0.021%/day, and 39.57 ± 0.542 g/fish; mean ± SD), CMC20 (47.3 ± 2.58 g/fish, 3.24 ± 0.082%/day, and 45.16 ± 0.760 g/fish), and CMC40 (40.2 ± 1.17 g/fish, 3.00 ± 0.040%/day, and 39.43 ± 0.930 g/fish) diets attained superior (p < 0.0001 for all) weight gain, specific growth rate (SGR), and feed consumption compared to olive flounder fed the CMC0 (35.1 ± 0.96 g/fish, 2.81 ± 0.039%/day, and 33.75 ± 0.544 g/fish), CMC60 (31.7 ± 1.62 g/fish, 2.66 ± 0.068%/day, and 31.60 ± 1.080 g/fish), CMC80 (24.7 ± 0.63 g/fish, 2.33 ± 0.033%/day, and 25.27 ± 0.689 g/fish), and CMC100 (17.8 ± 0.32 g/fish, 1.92 ± 0.021%/day, and 18.99 ± 0.592 g/fish, respectively) diets. Weight gain, SGR, and feed consumption of olive flounder fed the CMC60 diet were comparable to olive flounder fed the CMC0 diet. Feed efficiency and protein efficiency ratio of olive flounder fed the CMC60 diet (1.02 ± 0.007 and 1.79 ± 0.034) were comparable to fish fed the CMC0 diet (1.04 ± 0.012 and 1.85 ± 0.021, respectively). None of the plasma and serum measurements, proximate composition, amino acid profiles, or survival of olive flounder after S. iniae infection were influenced by dietary treatments. In conclusion, CMC can substitute FM up to 60% (39% FM protein in the diet) without deteriorating growth performance, feed availability, or the survival of fish after S. iniae infection.

Interleukin-6 receptor (IL-6R) is involved in the innate immune response of olive flounder (Paralichthys olivaceus) to resist pathogens

The immunity of bony fish depends on the conserved components and functional complexity of immune cytokines. Herein, we used the pleiotropic cytokine IL-6 receptor as a target gene to study the defense response of PoIL-6R resist pathogens in different immune tissues of olive flounder, we found that PoIL-6R is widely expressed in these tissues studied and shows a significant immune response after stimulation with bacteria in vivo. In addition, we found a broad-spectrum immune response of PoIL-6R to bacterial and pathogen-associated molecular patterns through in vitro stimulation of olive flounder embryonic cell lines (FEC), and further revealed the function of PoIL-6R in positively regulating the natural immunity of olive flounder through activation of the NF-κB signaling pathway by overexpression of PoIL-6R in FEC. Collectively, these results demonstrate for the involvement of interleukin-6 receptors in the innate immune response of olive flounder to resist pathogens, and provides new perspectives and theoretical foundations for assessing the evolutionary mechanisms of adaptive immunity in vertebrates.