Offshore Population Research Articles

Impacts of estuarine habitat degradation on the modeled life history of marine estuarine-dependent and resident fish species.

Shallow coastal and estuarine habitats play an essential role in the life cycles of many fish species, providing spawning, nursery, feeding, and migration areas. However, these ecologically valuable habitats are increasingly threatened by anthropogenic activities, causing substantial changes in both habitat availability and quality. Fish species use these shallow coastal habitats and estuaries during various life stages, leading to their categorization into guilds based on how and when they rely on these areas. This differential functional use of estuaries means that changes to these habitats may affect each guild differently. To understand the impact of estuarine habitat degradation on fish populations, it is therefore necessary to consider the full life cycle of fish and when they rely on these coastal habitats. Here, we use conceptual size-structured population models to study how estuarine habitat degradation affects two functionally different guilds. We use these models to predict how reduced food productivity in the estuary affects the demographic rates and population dynamics of these groups. Specifically, we model estuarine residents, which complete their entire life cycle in estuaries, and marine estuarine-dependent species, which inhabit estuaries during early life before transitioning offshore. We find that total fish biomass for both guilds decreases with decreasing food productivity. However, the density of juveniles of the marine estuarine-dependent guild can, under certain conditions, increase in the estuary. This occurs due to a shift in the population biomass distribution over different life stages and a simultaneous shift in which life stage is most limited by food. At the individual level, somatic growth of juveniles belonging to the estuarine-dependent guild decreased with lower food supply in the estuary, due to increased competition for food. The somatic growth rates of fish belonging to the resident guild were largely unaffected by low food supply, as the total fish density decreased at the same time and therefore the per-capita food availability was similar. These outcomes challenge the assumption that responses to habitat degradation are similar between fish guilds. Our study highlights the need to assess not only fish biomass but also size distributions, survival, and somatic growth rates for a comprehensive understanding of the effects of habitat degradation on fish populations. This understanding is crucial not only for estuary fish communities but also for successful conservation and management of commercially harvested offshore population components.

How to quantify the regional effects of ocean temperature rise due to climate change: implications of Octopus maya ecophysiology on food security of the Yucatan shelf artisanal fishermen

The vital survival, maturation, and reproduction rates of Octopus maya were formulated according to the thermal preferences in each stage (juvenile and adult) and the bottom temperature of the Yucatan shelf projected from different shared socioeconomic pathways (SSPs): SSP1-5, to describe the species population growth in shallow waters. The dispersion of each individual in the population and the spread of the offshore population were incorporated with an integrodifference equation. For each SSP, the food security of the artisanal fishermen in the Western, Central, and Eastern Yucatan shelf region was analyzed based on the proposed availability, access, and utilization indices of Octopus maya as food. The analysis was complemented with an average monthly protein and income poverty indicators that this species’ shallow water fishery would have the capacity to supply by the year 2100. Although the proportion of the legally O. maya catchable population may be favored with the gradual increase in temperature in the coming years, this increase may not translate into greater food security for the artisanal fishermen who catch this species in shallow waters. Moreover, this fishery alone may not have the capacity to supply the average annual intake of 10.6 kg of protein per person recommended and maintain fishermen and their families above the income poverty line by 2100.

Exploring mtDNA Databases to Evaluate the Population Structure and Genetic Diversity of Tursiops truncatus in the Atlantic Ocean: Implications for the Conservation of a Small, Offshore Population

Inshore and offshore bottlenose dolphin, Tursiops truncatus, ecotypes were distinguished through genetics, distribution, diet, morphology, diversity, and social behaviors. Although T. truncatus is a widely studied species, few studies have focused on offshore populations. Offshore biodiversity is frequently neglected due to the difficulty of data collection, and therefore, it is challenging to assess how threatened these populations are. A small, offshore population of dolphins residing around the Saint Peter Saint Paul Archipelago (SPSPA) in the middle of the Atlantic Ocean has been monitored for several years, and a decrease in the number of dolphin sightings has recently been noticed. We analyzed a comprehensive mtDNA control-region sequence dataset for this species to infer the conservation status and better understand the relationships between the SPSPA population and other offshore populations. We assessed the genetic diversity and population structure of the bottlenose dolphin from inshore and offshore populations of the Atlantic Ocean. Offshore populations are more genetically diverse and have less variation between populations than inshore populations. The offshore populations share haplotypes, indicating potential gene flow. However, the SPSPA population presented the lowest levels of genetic diversity between populations. The conservation status of the SPSPA population is concerning, and it is necessary to apply effective management strategies to guarantee its protection.

Dorsal Fin Spines and Rays for Nonlethal Ageing of Goliath Grouper Epinephelus itajara

Atlantic Goliath Grouper, Epinephelus itajara, the largest grouper in the western North Atlantic, exhibits life history characteristics (e.g., it is slow-growing, long-lived, and late-maturing) that make it particularly susceptible to fishing pressure. Otoliths, the structure typically processed for age determination, are usually collected as part of fishery monitoring, but otoliths are not available from Goliath Grouper due to a harvest moratorium enacted in 1990 for United States waters. Alternative structures—such as dorsal fin rays or spines—can be acquired for ageing via nonlethal sampling and may provide reliable age estimates. Since 2006, the Florida Fish and Wildlife Conservation Commission (FWC) has been collecting incidental Goliath Grouper samples from mortality events including those from cold kills and red tides. Corresponding otolith, dorsal fin ray and dorsal fin spine samples were compared to determine the accuracy and precision of the external ageing structures. Marginal increment analyses indicated that annulus (translucent zone) deposition occurred primarily in March–June on spines and in April–June on rays. While ages determined from both rays and spines exhibited high precision, the accuracy compared to otolith ages was low as a result of systematic underageing of both external structures, particularly at the oldest age classes. A correction factor was applied to rays and spines that remedied the underageing, but the correction factor was more successful for spines. An analysis of ray and spine section accuracy based on nonlethal structure removal from the fish (i.e., comparing ages from sections at the base of the structure within the body to those sectioned from the external surface of the body) determined that spines can be accurately aged when sampled distal of the base of the structure, but that rays cannot. Nonlethal sampling and ageing of Goliath Grouper spines facilitated by public participation could address management goals and help determine the offshore population age structure. Simultaneously, it could contribute critical data needed for a traditional stock assessment, should such a path be warranted by the recovery or management of the species.

A preliminary note on population structure in eastern South Pacific common bottlenose dolphins, Tursiops truncatus

Previous studies of eastern South Pacific common bottlenose dolphins, Tursiops truncatus, defined offshore and inshore ecotypes in Peru based on cranial and tooth morphology, documented the presence of a single resident inshore community (‘pod-R’) in central-north Chile, and confirmed the presence of offshore bottlenose dolphins off Chile. Here, mtDNA control region (331bp) was examined to evaluate genetic relationships between four geographic areas: inshore pod-R (n=8), Chilean offshore population (n=8), Peruvian inshore (n=3) and offshore (n=12) ecotypes. This is the first genetic analysis of T. truncatus in this ocean basin. Phylogenetic analysis grouped the three Peruvian specimens morphologically identified as inshore ecotype in an independent cluster, supported by 100% bootstrap value. The net genetic distance between Peruvian inshore and Peruvian offshore ecotypes was estimated at 2.9%, and even higher when compared with Chilean bottlenose dolphins. Morphological and mtDNA evidence combined argues for considering inshore and offshore ecotypes as evolutionary significant units, to be managed accordingly. Despite its inshore behavioural ecology, pod-R presented a high divergence from the Peruvian inshore ecotype and a relatively closer affinity with the Chilean offshore stock (3.41% and 0.87% net interpopulational distance, respectively). However, homogeneity tests showed significant genetic differences of pod-R with all other groups, including Chilean offshore. This, combined with a low nucleotide diversity (0.0069) and behavioural observations, suggest that pod-R may be reproductively isolated and active protection measures are recommended. Only one haplotype from a total of 21 was shared by Peruvian and Chilean offshore animals. Their net genetic distance was estimated at 0.024 and no significant differences were found in haplotype frequencies, suggesting a single, wide-ranging ‘Peru-Chile offshore stock’.

Evidence of resident coastal population(s) of false killer whales (Pseudorca crassidens) in northern Australian waters

To help evaluate the distribution, residency, population size and structuring (and hence conservation status) of the poorly known false killer whalePseudorca crassidensin northern Australian waters, we undertook studies of sightings, movement patterns based on satellite telemetry, and genetics. Sighting data indicates that false killer whales are regular, year-round inhabitants of coastal areas of northern Australia. Satellite-tagged animals spent extended periods of time in shallow coastal waters, with no tagged animals leaving the continental shelf. The lack of spatial overlap in the areas visited by individuals tagged in the Arafura/Timor Seas compared to those tagged in the Gulf of Carpentaria suggests that there may be more than one population in northern Australia coastal waters. All 14 genetic samples collected across 1600 km of coastline possessed the same newly identified mitochondrial control region haplotype, designated haplotype 45. Notably, haplotype 45 is distinct from all previously published false killer whale haplotypes globally and is most similar to the two haplotypes that typify the endangered main Hawaiian Islands insular false killer whale population. Based on these results and evidence from recent movement records of those tagged, false killer whales in northern Australia are apparently demographically independent from the offshore population(s). Further assessment of the population conservation status is now required.

Global change differentially modulates Caribbean coral physiology.

Global change driven by anthropogenic carbon emissions is altering ecosystems at unprecedented rates, especially coral reefs, whose symbiosis with algal symbionts is particularly vulnerable to increasing ocean temperatures and altered carbonate chemistry. Here, we assess the physiological responses of three Caribbean coral (animal host + algal symbiont) species from an inshore and offshore reef environment after exposure to simulated ocean warming (28, 31°C), acidification (300-3290 μatm), and the combination of stressors for 93 days. We used multidimensional analyses to assess how a variety of coral physiological parameters respond to ocean acidification and warming. Our results demonstrate reductions in coral health in Siderastrea siderea and Porites astreoides in response to projected ocean acidification, while future warming elicited severe declines in Pseudodiploria strigosa. Offshore S. siderea fragments exhibited higher physiological plasticity than inshore counterparts, suggesting that this offshore population was more susceptible to changing conditions. There were no plasticity differences in P. strigosa and P. astreoides between natal reef environments, however, temperature evoked stronger responses in both species. Interestingly, while each species exhibited unique physiological responses to ocean acidification and warming, when data from all three species are modelled together, convergent stress responses to these conditions are observed, highlighting the overall sensitivities of tropical corals to these stressors. Our results demonstrate that while ocean warming is a severe acute stressor that will have dire consequences for coral reefs globally, chronic exposure to acidification may also impact coral physiology to a greater extent in some species than previously assumed. Further, our study identifies S. siderea and P. astreoides as potential 'winners' on future Caribbean coral reefs due to their resilience under projected global change stressors, while P. strigosa will likely be a 'loser' due to their sensitivity to thermal stress events. Together, these species-specific responses to global change we observe will likely manifest in altered Caribbean reef assemblages in the future.

Discovery of a large offshore population of the northeast Pacific burrowing shrimp Neotrypaea sp. (Decapoda: Axiidea)

The burrowing ghost shrimp Neotrypaea californiensis and Neotrypaea gigas, are recognized primarily from soft-sediment intertidal mudflats of estuaries and coastal lagoons in the northeastern Pacific from southern Alaska to Baja California. Individual records, however, are also known from occasional deep-water offshore collections. In previous offshore grab samples from California to Washington, USA, Neotrypaea spp. were present in about 14% of stations between 20 and 130 m depth. We assumed these usually low density (1–2 per core) small individuals were errant settlers from estuarine sources until summer 2019 when we found the first known large multi-year class population in an area 58–77 m deep 12 km offshore of Newport, Oregon, USA. The newly discovered Neotrypaea population, that we tentatively identify as Neotrypaea gigas, occurred at 35 of 52 stations (67%) in densities up to 26 individuals per 0.1 m2 box core and included multiple size classes. Plan view camera samples indicate burrow densities of over 400 openings m−2. This is the first report of a major burrowing shrimp population on the continental northeast Pacific coastal ocean.

Movements and Diving Behavior of the Eastern North Pacific Offshore Killer Whale (Orcinus orca)

The Pacific Offshore killer whale population is currently listed as data deficient on the IUCN Red List and Threatened in Canada. The population is estimated at 300 individuals with a range extending from Southern California to the Aleutian Islands in Alaska. Only 157 encounters with this ecotype have been photo-documented between 1988 and 2014; consequently, movement and behavioral data are limited and restricted to areas commonly surveyed. To better understand movements, habitat use, and diving behavior, we deployed seven dart-attached satellite tags during two encounters with Offshores off California and one encounter off Washington State in 2013. Group size estimates were 6, 9, and 30 whales, respectively. Transmission durations ranged from 6.3 to 147.4 days providing a combined 2,469 location estimates. Whales tagged in Southern California travelled from 30.7°N to 59.3°N degrees latitude, covering a larger latitudinal range in 75 days than all previous sightings (33.5°N to 60.0°N). Within most of the California Current (southern extent of locations up to 48.5°N), Offshores typically used waters deeper than the 200 m isobath. As they approached the northern extent of the California Current and travelled into British Columbia and Alaska, locations were more common near or inside the 200 m isobath. Individuals tagged in the same group disassociated and re-associated within the tracking duration, with animals tagged together separating by as much 1,339 km. Two of the tags also reported summarized diving behavior, and tags captured 1,110 total dives with median dive depths of 41 m and 100 m for each tagged whale; the maximum dive depth was 480 m. Dives were typically short (median = 3.9 and 4.1 min respectively, max = 12.3). A comparison of dive depths and bathymetry suggests that whales typically dove to or near the seafloor in continental shelf habitat. Despite the small number of tag deployments, these data provide new information on social structure, individual ranges, diving behavior, and habitat use of this seldom encountered killer whale ecotype.

Year-round genetic monitoring of mixed-stock fishery of Atlantic cod (Gadus morhua); implications for management

Abstract Mixed-stock fisheries pose a challenge for fisheries management recommendations and management, as mixed stocks can lead to unintentional over- or under-exploitation of stocks, with both short- and long-term biological and economic consequences. This study demonstrates practical application and implementation of year-round high-resolution genetic stock monitoring in management of mixed Atlantic cod (Gadus morhua) stocks in western Greenland. Using a panel of 96 high resolution gene-associated SNPs, we identified the stock of origin for four cod stocks in the two major inshore mixed-stock fisheries. Contribution of individual stocks was quantified to identify if fjord sections, times of year, and fish size, would allow a “clean fishery” with a minimal contribution of the depleted West Greenland Offshore (WGO) population. High level of mixing was identified with 50% of inshore catches originating from the inshore stock, 20% from the East Greenland/Iceland offshore stock, and 30% from the WGO stock. Although some spatiotemporal variation of stock proportions was identified, a practice allowing exclusively fishing a specific stock was not possible. Accordingly, we demonstrate the need to allocate catches at the biological stock level and show that application of high-resolution genetics is a reliable and necessary tool.

Site fidelity, spatial use, and behavior of dwarf sperm whales in Hawaiian waters: using small‐boat surveys, photo‐identification, and unmanned aerial systems to study a difficult‐to‐study species

AbstractDwarf sperm whales (Kogia sima) have been studied rarely at sea. We used photo‐identification, boat‐ and drone‐based behavioral observations, and citizen science photo contributions to examine site fidelity, spatial use, and behavior in Hawaiʻi. Sighting rates were highest in island slope (500–1,000 m) waters. Over 40% of photo‐identified individuals were linked by association in the same social network. More than half of the very distinctive individuals were seen more than once, and 28.5% were seen in multiple years, with one individual seen 14 times over a 15‐year span. Resighted individuals and those in the main cluster of the social network were found in significantly shallower water than individuals that were not resighted or that were in isolated clusters. Distances between resighting locations suggest small home ranges. This suggests an insular slope‐dwelling population that overlaps with an offshore population. Evidence of unsuccessful predatory attempts by large sharks was recorded on four individuals, and linear wounds consistent with interactions with line fisheries were documented on three individuals. Surface and subsurface behavior recorded by drone revealed vigilance behavior likely to minimize predation risk. Lessons learned from this study can be applied elsewhere to increase knowledge of this poorly known and difficult‐to‐study species.

Variation in Immune-Related Gene Expression Provides Evidence of Local Adaptation in Porites astreoides (Lamarck, 1816) between Inshore and Offshore Meta-Populations Inhabiting the Lower Florida Reef Tract, USA

Coral communities of the Florida Reef Tract (FRT) have changed dramatically over the past 30 years. Coral cover throughout the FRT is disproportionately distributed; >70% of total coral cover is found within the inshore patch reef zone (<2 km from shore) compared to 30% found within the offshore bank reef zone (>5 km from shore). Coral mortality from disease has been differentially observed between inshore and offshore reefs along the FRT. Therefore, differences between the response of inshore and offshore coral populations to bacterial challenge may contribute to differences in coral cover. We examined immune system activation in Porites astreoides (Lamarck, 1816), a species common in both inshore and offshore reef environments in the FRT. Colonies from a representative inshore and offshore site were reciprocally transplanted and the expression of three genes monitored biannually for two years (two summer and two winter periods). Variation in the expression of eukaryotic translation initiation factor 3, subunit H (eIF3H), an indicator of cellular stress in Porites astreoides, did not follow annual patterns of seawater temperatures (SWT) indicating the contribution of other stressors (e.g., irradiance). Greater expression of tumor necrosis factor (TNF) receptor associated factor 3 (TRAF3), a signaling protein of the inflammatory response, was observed among corals transplanted to, or located within the offshore environment indicating that an increased immune response is associated with offshore coral more so than the inshore coral (p < 0.001). Corals collected from the offshore site also upregulated the expression of adenylyl cyclase associated protein 2 (ACAP2), increases which are associated with decreasing innate immune system inflammatory responses, indicating a counteractive response to increased stimulation of the innate immune system. Activation of the innate immune system is a metabolically costly survival strategy. Among the two reefs studied, the offshore population had a smaller mean colony size and decreased colony abundance compared to the inshore site. This correlation suggests that tradeoffs may exist between the activation of the innate immune system and survival and growth. Consequently, immune system activation may contribute to coral community dynamics and declines along the FRT.

Cross‐Shelf Variability of Deacon Rockfish Sebastes diaconus Age, Growth, and Maturity in Oregon Waters and Their Effect on Stock Status

AbstractUnderstanding the basic biology of exploited fish populations, and how it changes across the waterscape, is essential to sustainable management. Biological features (age, growth, reproductive investment, and fish condition) for the newly described Deacon Rockfish Sebastes diaconus were evaluated between two different population segments, an exploited nearshore population and an unexploited offshore population, and were used to parameterize population dynamics models to evaluate how area‐specific biological features influence measures of stock status. Monthly hook‐and‐line sampling was conducted for 1 year, with ˜50 fish collected per area per sampling period. Despite the relatively small (<50 km) distance between the two sampling areas, there were discernible differences in the biology of Deacon Rockfish. When fish of the same size‐class were compared between offshore and nearshore segments, the unexploited offshore fish were older, suggesting that fishing may have decreased the overall age structure of the exploited nearshore population segment. Parameters of the von Bertalanffy growth model differed the most between the sexes and secondarily between the nearshore and offshore population segments. Length at 50% maturity was 28 cm and age at 50% maturity was 4.1 years for females, which is smaller and younger than previously reported in the literature. Deacon Rockfish were captured in both the nearshore and offshore areas throughout the year, which suggests that at least some component(s) of the population is present in both areas throughout the year. These differences had a nontrivial influence on measures of stock status and will be important to consider during future stock assessments and as management considers the effect of the recent reopening of the offshore population segment to fishing.

Spatial analysis on the occurrence of inshore and offshore bottlenose dolphins (Tursiops truncatus) in Osa Peninsula waters and Golfo Dulce, Costa Rica

The aim of this assessment is to advance our understanding in the spatial ecology of the resident inshore and offshore population of bottlenosedolphins in Golfo Dulce (GD) and Osa Peninsula Waters (OPW). Our approach used niche-based models (Phillips et al., 2006, Thorne et al., 2012,Friedlaender et al., 2011), which provided details of how dolphins use coastal and oceanic habitats, describing the factors that influence theirdistribution in the study area and identifying the critical habitats to be considered for management and conservation. Our analyses indicate severalimportant aspects of the distribution of these two ecotypes of bottlenose dolphins. As expected in the study area, these two ecological races occurin close proximity, but differ in the structural factors of the habitat they occupy. The inshore population uses areas close to the mouths of the riversas critical foraging habitats, being influenced by tidal cycles and seasonal changes in water temperature and salinity. The offshore population inoceanic habitats must rely on prey species found in rare but profitable patches, therefore pelagic dolphins in the open ocean would often need totravel long distances searching for these patches. Distribution models illustrating the difference in habitat use presented in this assessment are keyto effective management of the marine mammals’ diversity in Costa Rica.

Connectivity between Pacific halibut Hippoglossus stenolepis residing in the Salish Sea and the offshore population, demonstrated by pop-up archival tagging

Fisheries for Pacific halibut (Hippoglossus stenolepis) in the US Pacific Northwest support a variety of harvest sectors including some that are restricted to coastal offshore waters and others confined to the inland waters of the Salish Sea. Such restrictions have generated interest in the degree to which the Salish Sea represents an extension of the offshore population versus its potential to support an isolated stock. Here, twelve female Pacific halibut were tagged during boreal summer with pop-up archival transmitting (PAT) tags that were programmed to report during either the subsequent winter spawning period or late-spring feeding period. High-resolution depth data failed to produce evidence of spawning within the Salish Sea, while depth-temperature profiles were consistent with the departure of migrants between October and January. Final positions and at-liberty longitude estimates suggest that ~60% of the tagged fish departed the Salish Sea, with confirmed migrations to Canada and Alaska. The recapture in the southern Salish Sea of one fish whose tag had reported earlier from offshore Canadian waters demonstrated the occurrence of cyclic migrations. Evaluation of likely maturity status suggests that local demographics reflect either the cumulative effects of spawning migrations in which some emigrants remain offshore after departing the system, or some combination of enhanced growth or delayed maturity. These findings confirm that the Salish Sea does not represent a functionally-independent stock, but suggest that inshore waters may play a unique role by receiving recruits, rearing individuals to maturity, and exporting spawners to the offshore stock components, while retaining a proportion of site-faithful individuals with cyclic seasonal connectivity with offshore spawning groups.

Genetic Differences in Spatially and Temporally Isolated Populations: Winter and Spring Populations of Pelagic Mollusk Clione (Mollusk: Gymnosomata), Southern Okhotsk Sea, Japan

The pelagic mollusk Clione is a naked pteropod with a sympatric two-species distribution in the southern Okhotsk Sea, Japan, consisting of the morphologically and genetically distinct C. elegantissima and C. okhotensis. Clione elegantissima appears in both winter and spring, and body length differs between the winter coastal population (WCP, January to March, 10–20 mm) and the spring offshore population (SOP, April to July; up to 30 mm). This body size difference and temporal-spatial separation of the populations suggests that the SOP is either a cryptic species or C. limacine drifted from the Subarctic Atlantic Ocean or an interspecies of C. elegantissima resulting from reproductive isolation. We investigated the taxonomic positions of both populations using morphological and genetic analyses and identified both as C. elegantissima with very high genetic similarity. We explain the occurrence of spatio-temporal isolated populations using the water mass dynamics in the Okhotsk Sea. Warm water entering the southern Okhotsk Sea around Japan through the Soya Straits is divided into the Soya Warm Water (SWW: June to November) and the Forerunner of the SWW (FSWW: March to May); cold water entering the Okhotsk Sea around Japan, east of Sakhalin Island, is divided into the East Sakhalin Current Water (ESCW: November to April). The Cold Water Belt (CWB) is frequently formed off the SWW during summer and autumn and comprises upwelling cold water originating from either subsurface water of the Japan Sea off Sakhalin or Okhotsk Sea bottom water. We present the temporal-spatial isolation mechanism of WCP and SOP per the SWW, FSWW, ESCW, and CWB dynamics.

Effective population size of an offshore population of bottlenose dolphins, Tursiops truncatus, from the São Pedro and São Paulo Archipelago, Brazil

The São Pedro and São Paulo Archipelago (SPSPA) (00°56’N, 29°22’W) lies approximately 1010km northeast off the coast of Rio Grande do Norte State in Brazilian waters. Recently, through photo-identification and group size analysis, around 20-30 individual bottlenose dolphins, Tursiops truncatus, from SPSPA were recognized as a resident, and potentially genetically isolated, population. The effective population size (Ne), not the census number (Nc), as well the sex ratio, are of primary concern from an evolutionary and conservation management perspectives. The estimate of Ne reflects the number of individuals responsible for the maintenance of genetic diversity of a species or population as well its evolutionary potential. For this reason, we present here the first Ne and sex ratio estimates for the bottlenose dolphin population from SPSPA. Sex was molecularly determined for 19 biopsy samples collected from bottlenose dolphins from SPSPA between January and February 2005. The Newas estimated by direct counting of reproductive adults sexed by DNA analysis. The resulting Ne was 12 individuals and the sex ratio was 1.11 male to 1 female, however, it was not significantly different from the expected 1:1 ratio (χ2 test, α= 0.05; df = 1). The effective population size based on the genetic diversity of 19 sequences of the mtDNA control region resulted in a female effective population size of 223 individuals, and the total long-term effective size of ~470 individuals. We believe that the estimated Ne for the SPSPA population is a critical value, because it is significantly lower than the mean minimum viable population (MVP) suggested for vertebrates (around 5000 breeding age adults). This small Ne is of great concern and should be taken into account in future management plans to ensure the conservation and protection of this small population at SPSPA.

Temporal–spatial distribution of an island‐based offshore population of common bottlenose dolphins (Tursiops truncatus) in the equatorial Atlantic

AbstractA little‐studied common bottlenose dolphin (Tursiops truncatus) population inhabits the offshore waters surrounding Saint Paul's Rocks, a Brazilian marine protected area in the equatorial Atlantic Ocean. Five field expeditions (May 2011–May 2013) were conducted to characterize the habitat use, population size, and site fidelity of this population. Three different survey methods were employed: line‐transect surveys, land‐based surveys, and photo‐identification surveys. A population size of 23 individuals (19–28, CI 95%), which were present on most sampling days (>90% of surveys), was estimated. The maximum resighting interval of photo‐identified animals was 9 yr and 3 mo for five distinct individuals, based on data from nonsystematic efforts that have been ongoing since 2004. The dolphins exhibited strong site fidelity, as the minimum convex polygon (MCP, 95%) method revealed that they restricted their movements to a 0.5 km2 area across seasons and a 0.99 km2 area across years (95% kernel). The dolphins preferred shallow waters close to the archipelago (<1.2 km from the islands), especially on the eastern and southeastern sides, where oceanographic models have revealed persistent upwelling that may result from underwater currents and where food may be more predictably available.

Trace element reference intervals in the blood of healthy green sea turtles to evaluate exposure of coastal populations

Exposure to essential and non-essential elements may be elevated for green sea turtles (Chelonia mydas) that forage close to shore. Biomonitoring of trace elements in turtle blood can identify temporal trends over repeated sampling events, but any interpretation of potential health risks due to an elevated exposure first requires a comparison against a baseline. This study aims to use clinical reference interval (RI) methods to produce exposure baseline limits for essential and non-essential elements (Na, Mg, K, Ca, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Mo, Cd, Sb, Ba, and Pb) using blood from healthy subadult turtles foraging in a remote and offshore part of the Great Barrier Reef. Subsequent blood biomonitoring of three additional coastal populations, which forage in areas dominated by agricultural, urban and military activities, showed clear habitat-specific differences in blood metal profiles relative to the those observed in the offshore population. Coastal turtles were most often found to have elevated concentrations of Co, Mo, Mn, Mg, Na, As, Sb, and Pb relative to the corresponding RIs. In particular, blood from turtles from the agricultural site had Co concentrations ranging from 160 to 840 μg/L (4–25 times above RI), which are within the order expected to elicit acute effects in many vertebrates. Additional clinical blood biochemistry and haematology results indicate signs of a systemic disease and the prevalence of an active inflammatory response in a high proportion (44%) of turtles from the agricultural site. Elevated Co, Sb, and Mn in the blood of these turtles significantly correlated with elevated markers of acute inflammation (total white cell counts) and liver dysfunction (alkaline phosphatase and total bilirubin). The results of this study support the notion that elevated trace element exposures may be adversely affecting the health of nearshore green sea turtles.

Transcriptome analysis deciphers evolutionary mechanisms underlying genetic differentiation between coastal and offshore anchovy populations in the Bay of Biscay

Morphometry and otolith microchemistry point to the existence of two populations of the European anchovy (Engraulis encrasicolus) in the Bay of Biscay: one in open seawaters, and a yet unidentified population in coastal waters. To test this hypothesis, we assembled a large number of samples from the region, including 587 juveniles and spawning adults from offshore and coastal waters, and 264 fish from other locations covering most of the species’ European range. These samples were genotyped for 456 exonic SNPs that provide a robust way to decipher adaptive processes in these populations. Two genetically differentiated populations of anchovy inhabit the Bay of Biscay with different population dynamics: (1) a large offshore population associated with marine waters included in the wide-shelf group, and (2) a coastal metapopulation adapted to estuarine environments in the Bay of Biscay and North Sea included in the narrow-shelf group. Transcriptome analysis identified neutral and adaptive evolutionary processes underlying differentiation between these populations. Reduced gene flow between offshore and coastal populations in the Bay of Biscay appears to result from divergence between two previously isolated gene pools adapted to contrasting habitats and now in secondary contact. Eleven molecular markers appear to mark divergent selection between the ecotypes, and a majority of these markers are associated with salinity variability. Ecotype differences at two outlier genes, TSSK6 and basigin, may hinder gamete compatibility between the ecotypes and reinforce reproductive isolation. Additionally, possible convergent evolution between offshore and coastal populations in the Bay of Biscay has been detected for the syntaxin1B-otoferlin gene system, which is involved in the control of larval buoyancy. Further study of exonic markers opens the possibility of understanding the mechanisms of adaptive divergence between European anchovy populations.